@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0119: (2016-03-12 )
MFEVNDTTYILRFNKQKVKTVELTSGISLVAALTANKGILSYQVIETLFVSGLVEEKGLVPVKQKEALEIFDKLVEEQGLISLNVAVIEKLQEDMGFLFR
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------.........10........-20........30-----...--...--------------..--40......--------..--------50.-.......---------------------60........70........80--..-----.......---------90........100--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------MFEVND
T
T
Y
I
L
R
FNKQ
K
V
K
-
T
V
E
LTSG
I
S
L
V
A
-----
A
L
T--ANK--------------G
I
--
L
S
Y
Q
V
I
E
T
--------
L
F
--------
V
S
G
-
L
VEEKGL---------------------VPV
K
Q
K
E
A
L
E
I
F
D
K
L
V
E
EQG
L
---
I
S
-----L
N
V
A
V
I
E
---------
K
L
Q
E
D
M
G
F
LFR----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
83.53
38%
-49
- C4 -
4AE4
3
UBAP1_HUMAN
A:
[9-64]
---------------------------------------------------------------------------------------------------------------------------------------------
R
Q
C
V
E
-
T
V
-
V
N
M
G
Y
S
Y
E
C
-----
V
L
R
--
A
M
K
A
A------------
G
A
--
N
I
E
Q
I
L
D
Y
--------
L
F
--------
A
H
G
-
Q
L
C
E
K
G
F
---------------------
D
P
L
L
V
E
E
A
L
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
77.85
34%
-51
- C4 -
1FCJ
2
CYSK_SALTY
A:
[246-289]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
---------------------
V
G
I
T
N
E
E
A
I
S
T
A
R
R
L
M
E
E
E
G
I
---
L
A
G
I
S
S
G
A
A
V
A
A
A
L
---------
K
L
Q
E
D
E
S
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
77.05
34%
-52
- C4 -
1D6S
1
CYSK_SALTY
A:
[246-289]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
---------------------
V
G
I
T
N
E
E
A
I
S
T
A
R
R
L
M
E
E
E
G
I
---
L
A
G
I
S
S
G
A
A
V
A
A
A
L
---------
K
L
Q
E
D
E
S
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
76.79
14%
-66
* C6 *
3GBY
3
?
A:
[2-128]
-----------------------------------------------------------------------------------------------------------------------------------
N
A
S
V
T
F
S
Y
L
A
E
T
D
Y
P
-
V
F
T
L
G
G
S
T
A
D
A
A
-----
R
R
L
--
A
A
S
--------------
G
C
--
A
C
A
P
V
L
D
G
--------
E
R
--------
Y
L
G
M
V
H
L
S
R
L
L
EGRKGWPTVKEKLGEELLET
V
R
S
Y
R
P
G
E
Q
L
F
D
N
L
I
S
V
A
A
A
K
C
----------
S
V
V
P
L
A
D
---------
E
D
G
R
Y
E
G
V
V
S
R
K
R
I
L
G
F
L
A
E
R
I-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
75.45
34%
-45
- C4 -
1OAS
1
CYSK_SALTY
A:
[246-289]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
---------------------
V
G
I
T
N
E
E
A
I
S
T
A
R
R
L
M
E
E
E
G
I
---
L
A
G
I
S
S
G
A
A
V
A
A
A
L
---------
K
L
Q
E
D
E
S
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
71.12
10%
-67
- C5 -
3FFL
-
APC7_HUMAN
A:
[21-166]
------------------------------------------------------------------------------------------------------------MN
V
I
D
H
V
R
D
M
A
A
A
GL
H
S
N
V
R
L
L
S
S
L
L
L
T
L
S
N
N
N
P
E
L
F
S
-
P
P
Q
K
Y
Q
L
L
V
Y
H
A
-----
D
S
L
--
F
H
D
--------------
K
----
E
Y
R
N
A
V
S
--------
K
Y
--------
T
M
A
-
L
Q
Q
K
K
A
L
---------------------
C
L
P
S
E
I
E
V
K
Y
K
L
A
E
C
Y
T
V
L
K
Q
---
D
K
-----
D
A
I
A
I
L
D
G
IPSRQRT
P
K
I
N
M
L
L
A
N
L
Y
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
66.76
41%
-69
- C3 -
4UOJ
-
?
A:
[858-898]
---------------------------------------------------------------------------------------------------------------------------------
K
V
S
D
P
K
L
H
L
S
Y
N
K
S
T
K
K
F
T
V
E
A
T
A
G
V
S
L
Y
T
-----
W
L
T
--
H
P
A
--------------
G
V
--
L
G
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
65.45
18%
-51
- C5 -
4CZB
1
NAH1_METJA
A:
[1-415]
M
E
L
M
M
A
I
G
Y
L
G
L
A
L
V
L
G
S
L
V
A
K
I
A
E
K
L
KIPD
I
P
L
L
L
L
L
G
L
I
I
G
PFLQIIP
S
D
S
A
M
E
I
F
E
Y
A
G
P
I
G
L
I
F
I
L
L
G
G
A
F
T
MRISLLKRV
I
K
T
V
V
R
L
D
T
I
T
F
L
I
T
L
L
I
S
G
F
I
F
N
M
V
L
NLPYTS
P
V
G
Y
L
F
G
A
I
T
A
A
T
D
P
A
T
L
I
P
V
F
S
R
V
R
T
N
--
P
E
V
A
I
T
L
E
A
E
S
-----
I
F
N
--
D
P
L
--------------
G
I
--
V
S
T
S
V
I
L
G
--------
L
F
GLFSSSN
P
L
I
D
-
L
I
T
L
A
G
G
---------------------
A
I
V
V
G
L
L
L
A
K
I
Y
E
K
I
I
I
H
C
D
F
-----------
H
E
Y
V
A
P
---------
L
V
L
G
G
A
M
L
L
L
Y
V
G
DD
L
L
P
S
I
CG
Y
G
F
S
G
Y
M
A
V
A
I
M
G
L
Y
L
G
D
A
L
F
R
A
DDID
Y
K
Y
I
V
S
F
C
D
D
L
S
L
L
A
R
V
F
I
F
V
F
L
G
A
C
IK
L
S
M
L
E
N
Y
F
I
P
G
L
L
V
A
L
G
S
I
FL
A
R
P
L
G
V
F
L
G
L
I
GSKHS
F
K
E
K
L
Y
F
A
L
E
G
P
R
G
V
V
P
A
A
L
A
V
T
V
G
I
E
I
L
K
N
ADKIPA
S
I
T
K
Y
IT
P
T
D
I
A
G
T
I
I
I
G
T
F
M
T
I
L
L
S
V
I
L
E
A
S
W
A
G
M
L
A
L
K
L
LGE
1
PsiBlast_PDB
65.08
41%
-69
* C3 *
4CVU
-
?
A:
[858-898]
---------------------------------------------------------------------------------------------------------------------------------
K
V
S
D
P
K
L
H
L
S
Y
N
K
S
T
K
K
F
T
V
E
A
T
A
G
V
S
L
Y
T
-----
W
L
T
--
H
P
A
--------------
G
V
--
L
G
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
64.53
11%
-75
- C5 -
1XSF
-
A:
[1-108]
------------------------------------------------------------------------------------------------------------------------------N
V
V
V
T
P
A
H
E
A
V
V
R
V
G
T
K
P
G
T
-
E
V
P
P
V
I
D
G
S
I
W
D
-----
A
I
A
--
G
C
E
AGGNWAINTGNGYY
G
G
--
V
Q
F
D
Q
G
T
W
--------
E
A
--------
N
G
G
-
L
R
Y
A
P
R
A
---------------------
D
L
A
T
R
E
E
Q
I
A
V
A
E
V
T
R
L
R
Q
G
W
-------------
G
A
W
P
---------
V
C
A
A
R
A
G
A
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
59.38
20%
-53
* C4 *
2CPG
1
COPG_STRAG
A:
[1-43]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
K
R
L
---------------------
T
I
T
L
S
E
S
V
L
E
N
L
E
K
M
A
R
E
M
G
L
---
S
K
-----
S
A
M
I
S
V
A
---------
L
E
N
Y
K
K
G
Q
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
55.95
15%
-78
- C4 -
1XKP
-
YOPN_YERPE
A:
[161-246]
----------------------------------------------------------------------------------------------------------------------------------------------
Q
A
L
V
-
S
M
A
E
E
Q
G
E
T
I
V
L
G
A
R
I
T
P
E
A
Y
R
E
S
Q
S
-------------
G
V
--
N
P
L
Q
P
L
R
D
--------
T
Y
--------
R
D
A
-
V
M
G
Y
Q
G
I
-----------------------------
Y
A
I
W
S
D
L
Q
-
R
F
P
N
GD
I
D
S
-----
V
I
L
F
L
Q
----------
A
L
S
A
D
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
52.34
36%
9
- C7 -
3MUX
-
?
A:
[112-152]
-----------------------------------------------------------------------------------------------------------------------------------------------------------
S
W
I
N
-----
S
L
V
--
S
P
T
--------------
G
K
--
V
G
Y
V
N
I
S
T
--------
G
P
--------
I
S
A
-
A
G
E
E
K
A
I
---------------------
V
P
I
K
T
A
I
A
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
52.31
36%
11
* C7 *
3N73
-
?
A:
[112-152]
-----------------------------------------------------------------------------------------------------------------------------------------------------------
S
W
I
N
-----
S
L
V
--
S
P
T
--------------
G
K
--
V
G
Y
V
N
I
S
T
--------
G
P
--------
I
S
A
-
A
G
E
E
K
A
I
---------------------
V
P
I
K
T
A
I
A
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
52.07
36%
10
- C7 -
3M6Y
-
?
A:
[136-176]
-----------------------------------------------------------------------------------------------------------------------------------------------------------
S
W
I
N
-----
S
L
V
--
S
P
T
--------------
G
K
--
V
G
Y
V
N
I
S
T
--------
G
P
--------
I
S
A
-
A
G
E
E
K
A
I
---------------------
V
P
I
K
T
A
I
A
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
48.25
14%
-17
- C5 -
4YVQ
-
A:
[1-89]
-------------------------------------------------------------------------------------------------------------------------------
M
L
E
T
V
P
T
I
K
K
L
R
A
Y
A
E
R
I
R
-
V
A
E
L
E
K
C
M
S
K
M
G
-----
D
D
I
--
N
K
K
--------------
T
T
--
R
A
V
D
D
L
S
R
--------
G
I
--------
V
N
R
-
F
L
H
G
P
-
M
---------------------
Q
H
L
R
C
R
T
L
S
E
T
L
E
N
M
H
A
L
N
R
M
---
Y
G
-----
L
E
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
45.89
14%
-90
- C4 -
3LCV
1
SGM_MICZI
B:
[15-48]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
R
I
D
E
I
E
R
A
I
T
K
S
R
R
Y
---
Q
T
-----
V
A
P
A
T
V
R
---------
R
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
45.72
14%
-17
- C6 -
2K5N
-
?
A:
[1-74]
------------------------------------------------------------------------------------------------------------------------------------------
M
A
M
N
G
T
I
T
-
T
W
F
K
D
K
G
F
-------------------------------
G
F
--
I
K
D
E
N
G
D
N
--------
R
Y
--------
F
H
---
V
I
K
V
A
N
---------------------
P
D
L
I
K
K
D
A
A
V
T
F
E
P
T
T
N
N
K
G
L
---
S
A
-----
Y
A
V
K
V
V
P
---------
L
E
H
H
H
H
H
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
44.29
20%
-22
- C4 -
2CZR
2
?
A:
[78-143]
-----------------------------------------------------------------------------------------------------------------------------------------------------------
P
D
N
G
-----
V
F
Y
--
I
K
N
--------------
G
S
FV
L
T
Y
R
Y
L
K
A
T
L
A
D
I
N
D
H
I
V
--------
W
S
G
-
F
K
V
V
E
D
N
---------------------------------
G
K
L
V
Q
E
D
V
Y
---
E
Y
-----
L
G
A
A
L
V
N
---------
H
I
K
N
N
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
43.18
24%
36
- C4 -
1UZC
-
A:
[11-31]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
N
T
K
E
E
A
K
Q
A
F
K
E
L
L
K
E
K
R
V
---
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------