@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0127: (2016-03-12 )
MTKIVKMSEKNEHGTLEQFYPETHAEAVKGLVSVSEEEKTIWDQKESTAGAEQKANTALNSAKDYVDTIGEGTVIFKGANLMGAGQSFKWDASKLKFGMTLLFSRYDAANNTPQDYYYHSVFLSKAQLVELAGKGILVQMPSTTYGDRKYLYVSTTGLSGHFDNSNYAAWALRQVTIM
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------........-.10........20........30-...-.....40........50........60.-.......70-........-80.....-...90-....-....------------.100.......110--.....--..120.......130--------.......140...--.-...150.....-..160.......170......--------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MT
K
I
V
KMS-EKNEHG
T
L
E
Q
FY
P
E
T
H
A
E
A
V
K
G
L
-
V
SV-
S
E
E
E
K
T
I
WDQKESTAGA
E
Q
K
A
N
TALN
S
A
-
K
D
Y
V
D
TIGE-
G
T
V
I
F
KGA-NLMGAGQ-SFKW--
D
A
S
K
-
L
K
F
G
------------
M
T
L
L
FSRYDAANNT--P
Q
D
Y
Y
--
Y
H
S
V
F
L
S
K
A
Q
L
V
E
LA--------GK
G
I
L
V
QMPSTTY--G-D
R
K
Y
L
Y
V
STTG-LSGHFDNSNY
A
A
W
A
L
R
Q
V
TIM--------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
78.10
16%
-42
- C3 -
4BTB
1
P4HA1_HUMAN
A:
[3-237]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PG
F
F
T
S
I
G
Q
M
T
D
L
I
H
T
E
K
D
L
V
T
S
L
K
D
Y
I
K
A
E
E
D
K
L
E
Q
I
K
K
W
A
-
E
K
L
D
R
L
T
S
T
A
T
K
D
P
G
H
P
V
N
A
F
K
L
-
M
K
R
-
L
N
---
T
E
W
S
E
L
E
N
L
V
L
K
D
M
S
D
G
F
I
S
N
L
T
-
I
Q
R
Q
Y
F
P
N
D
-
E
D
Q
V
G
A
A
K
-
A
L
L
R
L
Q
D
-
T
Y
N
L
--
D
T
D
T
-
I
S
K
G
NLPGVKH
K
S
F
L
T
A
E
D
C
F
E
L
G
K
V
A
Y
T
----
E
A
D
Y
--
Y
H
T
E
L
W
M
E
Q
A
L
R
Q
L
D
E
GEISTID
K
V
S
V
L
D
Y
L
S
Y
A
V
Y
Q
Q
G
-
D
L
D
K
A
L
L
L
T
K
K
-
L
L
E
L
D
P
E
H
Q
R
A
N
G
N
L
K
Y
F
E
Y
I
M
A------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
73.65
19%
-10
- C3 -
4O6D
8
?
A:
[19-377]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LYFQS
N
A
D
T
G
C
A
I
D
ISRQ
E
L
R
C
G
S
G
V
F
I
H
N
DVEAW
M
D
R
Y
K
Y
Y
P
-
E
T
--
P
Q
G
L
A
K
I
I
Q
K
A
H
K
E
G
V
C
G
L
-
R
S
V
-
S
R
L
E
H
Q
M
W
E
A
V
K
D
E
L
N
T
L
L
K
E
N
G
V
-------------
D
-
L
S
V
V
V
E
K
Q
-
E
G
M
Y
K
S
A
-
P
K
R
L
--
T
A
T
A
-
N
N
---------------
T
F
V
V
D
G
P
E
T
K
E
C
P
--
T
Q
N
R
A
--
W
N
S
L
E
V
E
D
F
G
F
G
L
T
S
--------
T
R
M
F
L
K
V
R
E
S
N
T
T
--
E
C
D
S
K
I
I
G
T
A
V
K
N
N
L
A
I
H
S
D
L
S
Y
W
I
E
S
R
L
N
D
T
W
K
L
E
R
AVLG
E
V
K
S
C
TWPETHTLWGDGILESDLIIPVTLAGPRSNHNRRPGYKTQNQGPWDEG
R
V
E
I
D
F
D
Y
C
P
G
T
T
V
T
L
S
ESCGHRGPATRTTTES
G
K
L
I
T
D
WCCR
S
C
T
L
P
P
L
R
Y
Q
T
DS
G
C
W
Y
G
MEIRPQRHDEKT
L
V
Q
S
QVNA
5
PsiBlast_PDB
67.04
28%
-43
- C4 -
3WNO
2
CTA1_BACCI
A:
[623-702]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
L
L
G
N
D
N
-
Q
W
R
N
--
T
A
S
Q
-
P
S
F
Q
------------
T
N
L
P
A
K
I
Y
I
G
A
D
E
T
--
I
S
D
V
Y
--
L
A
S
P
D
L
S
G
G
E
T
Q
E
L
A
F
T
S
G
T
D
AG
G
K
Y
V
S
F
T
V
P
E
L
K
Y
--
W
-
N
M
I
Y
M
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
66.30
16%
1
- C3 -
3UUN
-
DMD_HUMAN
A:
[338-453]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
V
N
L
D
R
Y
Q
T
A
L
E
E
V
L
S
W
L
-
L
S
A
-
E
D
T
L
Q
A
Q
G
E
I
S
N
D
V
E
V
V
K
D
Q
F
H
T
H
E
G
Y
M
-
M
D
L
T
A
H
Q
G
R
V
G
N
I
L
Q
L
G
S
-
K
L
I
G
T
G
K
-
L
S
E
D
--
E
E
T
E
-
V
Q
E
Q
------------
M
N
L
L
N
S
R
W
E
C
L
R
V
A
--
S
M
E
K
Q
S
N
L
H
R
V
L
M
D
L
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
66.23
28%
-38
- C4 -
3WNP
2
CTA1_BACCI
A:
[623-702]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
L
L
G
N
D
N
-
Q
W
R
N
--
T
A
S
Q
-
P
S
F
Q
------------
T
N
L
P
A
K
I
Y
I
G
A
D
E
T
--
I
S
D
V
Y
--
L
A
S
P
D
L
S
G
G
E
T
Q
E
L
A
F
T
S
G
T
DAG
G
K
Y
V
S
F
T
V
P
E
L
K
Y
--
W
-
N
M
I
Y
M
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
65.97
28%
-37
- C4 -
3WNK
2
CTA1_BACCI
A:
[642-721]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
L
L
G
N
D
N
-
Q
W
R
N
--
T
A
S
Q
-
P
S
F
Q
------------
T
N
L
P
A
K
I
Y
I
G
A
D
E
T
--
I
S
D
V
Y
--
L
A
S
P
D
L
S
G
G
E
T
Q
E
L
A
F
T
S
G
T
D
AG
G
K
Y
V
S
F
T
V
P
E
L
K
Y
--
W
-
N
M
I
Y
M
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
65.96
28%
-35
- C4 -
3WNN
2
CTA1_BACCI
A:
[623-702]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
L
L
G
N
D
N
-
Q
W
R
N
--
T
A
S
Q
-
P
S
F
Q
------------
T
N
L
P
A
K
I
Y
I
G
A
D
E
T
--
I
S
D
V
Y
--
L
A
S
P
D
L
S
G
G
E
T
Q
E
L
A
F
T
S
G
T
DAG
G
K
Y
V
S
F
T
V
P
E
L
K
Y
--
W
-
N
M
I
Y
M
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
64.80
28%
-40
- C4 -
3WNL
2
CTA1_BACCI
A:
[623-702]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
L
L
G
N
D
N
-
Q
W
R
N
--
T
A
S
Q
-
P
S
F
Q
------------
T
N
L
P
A
K
I
Y
I
G
A
D
E
T
--
I
S
D
V
Y
--
L
A
S
P
D
L
S
G
G
E
T
Q
E
L
A
F
T
S
G
T
D
AG
G
K
Y
V
S
F
T
V
P
E
L
K
Y
--
W
-
N
M
I
Y
M
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
64.33
28%
-40
- C4 -
3WNM
2
CTA1_BACCI
A:
[623-702]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
L
L
G
N
D
N
-
Q
W
R
N
--
T
A
S
Q
-
P
S
F
Q
------------
T
N
L
P
A
K
I
Y
I
G
A
D
E
T
--
I
S
D
V
Y
--
L
A
S
P
D
L
S
G
G
E
T
Q
E
L
A
F
T
S
G
T
D
AG
G
K
Y
V
S
F
T
V
P
E
L
K
Y
--
W
-
N
M
I
Y
M
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
53.88
13%
-2
- C3 -
4O5P
-
?
A:
[5-815]
NFGFHIAPTHPVAGRLTYD
S
K
K
L
S
E
N
I
L
K
Q
Q
S
D
E
R
V
F
S
R
A
QC
C
K
A
I
H
I
T
L
G
F
D
G
TNNN
D
K
A
D
G
SSVS
P
S
C
S
N
V
A
R
L
I
H
A
SIGSG
D
D
I
N
S
R
G
I
F
K
Y
Y
C
P
G
VGTVFPDIKEFTPSNMGLIG
A
E
G
G
E
N
R
I
N
W
G
L
V
Q
L
V
D
A
L
F
Y
T
L
LKSRLK
L
N
D
V
Q
G
L
V
E
E
M
STN
W
T
V
S
TLT
G
G
L
L
E
N
G
E
K
K
R
R
A
A
L
E
P
K
L
K
E
L
E
E
K
L
R
Q
R
Q
N
S
GQKPHI
L
A
M
R
L
Y
I
Y
G
F
S
R
G
A
A
E
A
R
A
F
A
N
W
L
Q
E
L
T
RVSDADG
R
V
E
Y
R
F
AG
L
P
I
S
IE
F
L
G
L
F
DTVAAVGLP
F
A
A
G
H
MDWADDTMR
L
P
D
E
A
LPEDCSFLK
R
C
V
H
L
V
S
CHEQRAS
F
P
L
D
S
IRRRDMNGRRTG
P
S
C
Y
R
K
W
T
V
E
Y
A
Y
P
G
VHSDVGGGYGVGNQGKAVGGSEFLLS
Q
I
A
L
Q
H
M
Y
A
E
A
F
E
A
GAPLQVPEWRVMV
P
K
I
E
A
E
F
SVS
E
E
L
A
T
R
F
N
A
W
Q
A
Q
A
K
A
G
P
L
E
E
V
I
R
R
E
T
A
L
I
T
A
W
R
I
D
R
YAGGLRNK
A
F
F
A
N
V
P
P
D
M
P
E
A
Q
Q
K
A
W
E
A
L
H
K
R
R
S
R
E
Y
A
A
A
Q
Q
L
P
P
M
S
A
A
E
Q
A
E
W
D
R
N
V
A
L
I
G
G
E
D
Q
L
R
D
-
L
R
V
E
-
K
Q
F
D
P
P
L
--------
D
Q
R
-
Q
L
L
G
A
A
A
-
E
F
A
H
--
D
Y
K
-----------------------
G
D
W
G
V
L
D
D
G
M
-
T
V
G
G
V
--
I
D
L
L
L
G
G
T
V
F
L
I
N
E
E
--------
D
E
A
E
E
Y
S
Q
I
H
R
D
G
--
S
-
A
R
Y
H
Q
L
F
S
A
----
P
D
R
V
A
P
G
Q
E
K
L
V
A
L
F
D
E
Q
V
H
DSRAPFTDYFRYRLVHFDNESN
K
R
L
S
V
LATAGRVVGVGVMLA
S
V
G
L
S
V
K
R
R
DPRMLLGG
L
P
E
I
S
A
F
D
PLTG
I
A
L
P
M
V
G
G
A
A
L
D
N
L
R
AFTRE
P
G
D
K
V
E
Q
I
G
Q
LPPPPP
L
A
V
A
A
V
QS
P
A
L
Q
Q
V
L
L
A
Q
Q
T
V------------
24
Fugue
53.63
15%
-12
* C4 *
1AON
-
CH10_ECOLI
O:
[1-97]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
N
I
R
P
L
H
D
R
-
V
I
V
-
K
R
K
-----
E
V
E
T
K
S
A
G
G
I
V
L
T
G
S
A
A
A
K
S
-
T
-------
R
-
G
E
V
L
A
V
G
N
G
R
I
L
E
N
G
E
-
V
K
P
L
--
D
----
V
K
V
G
------------
D
I
V
I
F
N
D
G
Y
G
V
K
S
E
--
K
I
D
N
E
--
E
V
L
I
M
S
E
S
D
I
L
A
I
V
E
--------
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
47.11
25%
77
- C5 -
4U7O
-
?
A:
[25-68]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
-
T
E
Q
Q
K
I
D
N
D
R
K
Q
F
V
S
N
V
S
H
E
L
R
T
P
L
T
S
L
-
R
S
Y
I
E
A
L
S
D
-
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
47.09
25%
70
* C3 *
2K6I
-
Y223_METJA
A:
[1-47]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
V
S
V
M
E
A
I
K
E
V
-
K
---
L
A
E
E
Q
A
V
K
E
I
E
E
A
K
N
R
A
E
Q
I
K
A
E
A
I
E
E
A
-
K
K
L
I
A
C
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
42.33
14%
-8
- C5 -
2HC5
-
YVYC_BACSU
A:
[70-97]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
V
K
V
I
-
E
D
S
T
N
E
V
I
R
E
I
P
P
K
R
W
L
D
F
Y
A
A
M
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
36.08
25%
100
- C5 -
4U7N
-
?
A:
[39-77]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
S
N
V
S
H
E
L
R
T
P
L
T
S
L
-
R
S
Y
I
E
A
L
S
D
-
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
31.49
23%
158
* C5 *
1U14
-
NCPP_SALTY
A:
[44-65]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
Q
P
F
G
S
E
E
T
R
A
G
A
R
N
R
V
D
N
A
R
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
24.91
13%
92
- C5 -
2F0C
-
?
A:
[45-113]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
I
-
N
D
D
-
L
E
--------
A
I
N
S
E
L
T
S
G
G
-----
N
V
V
-
H
K
T
G
D
E
T
I
A
-
G
K
K
T
F
T
G
N
-
V
E
V
N
G
S
--
L
T
L
P
T
K
S
W
S
G
E
L
G
G
G
------------
I
I
L
S
L
R
K
K
G
T
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
21.57
12%
98
- C5 -
3D8M
-
?
A:
[17-82]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
I
-
N
D
D
-
L
E
--------
A
I
N
S
E
L
T
S
G
G
-----
N
V
V
H
K
T
G
-
D
E
T
I
A
-
G
K
K
T
F
T
G
N
-
V
E
V
N
G
S
L
T
L
P
V
Q
--
T
L
T
V
E
A
G
N
G
------------
L
Q
L
Q
L
T
K
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
16.96
9%
55
- C2 -
3REA
-
NEF_HV1A2
A:
[121-177]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
Q
G
------------
Y
F
P
D
W
Q
N
Y
T
P
G
P
G
I
R
Y
P
L
T
F
G
--
W
C
F
K
L
V
P
V
E
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
16.50
19%
116
- C6 -
1T60
-
CO4A1_BOVIN
A:
[7-32]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
T
R
H
-
S
Q
T
T
--
D
D
P
Q
-
C
P
P
G
------------
T
K
I
L
Y
H
G
Y
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------