@TOME V2.3
(Nov 2016)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0143: (2016-03-12 )
MKYLENCDADNLYWISEIFEDISANLKSQKFIDYLRKLDKKFPELEMTQDIDIAESYF
Atome Classification :
(18 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------......--...10-...---.....-20.--.......30.-.......40.....--.-..50...-....--------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
K
Y
L
EN--CDAD
N
-
L
Y
W
---
I
S
E
I
F
-
E
D
I
--
S
A
N
L
K
S
Q
K
F
I
-
D
Y
L
R
K
L
D
K
KFPELE--M-TQDID
I
A
-ESYF--------------------------------------------------------------------------------------------
16
Fugue
88.03
25%
-107
- C4 -
4K7J
4
?
A:
[26-375]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GLLTDYGNASAS
P
W
M
K
K
L
Q
S
V
A
Q
GSG
E
T
F
R
I
L
Q
I
G
D
S
H
T
A
G
D
F
F
T
D
S
L
R
K
R
L
Q
K
T
WGDGGIGWVYPANVKGQRMAA
V
R
H
N
G
N
W
Q
S
L
T
SRNNTGDFPLGG
I
L
A
H
TGSG
G
S
M
T
L
T
A
SDGIASK
Q
R
V
S
L
FAKPLLAE
Q
T
L
T
V
NG
N
T
V
S
A
NGG
G
W
Q
V
L
D
T
G
A
A
L
P
L
T
I
H
T
E
M
P
W
D
I
G
F
I
N
I
E
N
PAG
G
I
T
V
S
A
MGINGAQLTQWSKWRAD
R
M
N
D
L
A
Q
--
T
G
A
D
L
-
V
I
L
S
Y
G
T
N
E
A
F
N
N
N
I
--
D
I
A
D
T
E
Q
K
W
L
-
D
T
V
R
Q
I
R
D
S
L
P
A
A
--------------
G
I
L
I
I
G
A
PESLKNTLGVCGTRPVR
L
T
E
V
Q
Q
M
Q
R
R
V
A
R
Q
G
Q
T
M
F
W
S
W
Q
N
A
M
GGICS
M
K
N
W
L
N
Q
GWAAKDGVHFS
A
K
G
Y
R
R
A
A
E
M
L
A
D
S
L
E
E
L
V
R
S
A
20
Fugue
74.79
20%
-95
- C4 -
3LLM
3
DHX9_HUMAN
A:
[1-235]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V
V
P
W
S
P
P
QSNWNPWTSSNIDEGPLAFAT
P
E
Q
I
S
M
D
L
K
N
E
L
M
Y
Q
L
E
Q
D
H
D
L
Q
A
I
L
Q
E
R
E
L
LPVKKF
E
S
E
I
L
E
A
I
S
Q
N
S
V
V
I
I
R
G
A
TGCGKTTQ
V
P
Q
F
I
L
D
D
F
I
Q
N
DRAAE
C
N
I
V
V
T
Q
PR
R
I
S
A
V
S
V
A
E
R
V
A
F
E
R
GEEPGKS
C
G
Y
S
V
RFESILPRPHA
S
I
M
F
C
T
V
G
V
L
L
R
K
L
E
A
------
G
-
I
R
G
---
I
S
H
V
I
-
V
D
E
IH
E
R
D
I
N
T
D
F
L
L
-
V
V
L
R
D
V
V
Q
A
Y
P
E
V
R
I
V
L
M
S
A
T
I
D
T
S
M
F
C
E
Y
F
FN
C
P
I
I
E
V-----------------------------------------------------------------------------------
1
PsiBlast_PDB
66.77
28%
-87
- C- -
2W50
2
CDNF_HUMAN
A:
[65-101]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
E
V
T
-
R
P
M
--
S
V
H
M
P
A
M
K
I
C
-
E
K
L
K
K
L
D
S
Q
I
C
E
L
K
--
Y
-
E
K
T
L
----------------------------------------------------------------------------------------------------
8
HHSearch
62.58
22%
-105
- C4 -
1YIR
1
PNCB2_PSEAE
A:
[62-106]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
Y
L
A
G
L
A
I
S
D
E
Q
-
L
A
F
---
L
E
R
I
---------
P
F
L
A
P
D
F
I
-
R
F
L
G
L
F
--
R
F
N
P
--------------------------------------------------------------------------------------------------------------
10
HHSearch
57.16
31%
-71
- C4 -
2WL8
-
PEX19_HUMAN
A:
[171-203]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
L
P
I
M
-
Q
S
I
--
M
Q
N
L
L
S
K
D
V
L
Y
P
S
L
K
E
I
T
E
K
Y
P
E
W
L
------------------------------------------------------------------------------------------------------------
15
Fugue
51.46
30%
-9
- C2 -
4TQT
8
?
A:
[14-490]
A
S
K
V
I
K
G
G
T
V
I
T
AD
R
T
F
R
A
D
I
L
I
E
DGKIAAIGD
S
L
E
G
D
E
V
I
D
ASG
C
Y
V
M
PG
G
I
D
P
H
T
H
L
QMPFMGTYSSDD
F
D
T
G
T
A
A
A
L
A
G
GTT
M
V
V
D
F
V
L
P
D
SEGN
L
L
D
A
L
Q
E
W
F
Q
K
A
G
KAR
T
D
Y
S
F
H
M
A
I
TGWN
E
R
T
F
N
E
M
A
E
V
V
K
R
GINTFHFMAYKG
A
L
M
V
N
D
D
E
M
F
A
S
F
Q
R
C
A
E
L
G
A
M
P
L
V
HAEN
G
D
I
V
A
Q
L
Q
A
K
L
M
A
E
GNDG
P
E
A
H
A
Y
S
R
P
P
E
V
E
G
E
A
T
N
R
A
I
M
I
A
D
Q
A
G
V
P
L
Y
V
V
HVSC
E
Q
S
H
E
A
I
R
R
A
R
Q
K
GMR
V
F
G
E
P
L
IQHLTLDESEYHNRD
W
D
Y
A
A
R
R
VMSPPFRD
K
L
N
Q
D
S
L
W
A
G
L
A
A
GSL
Q
C
V
A
T
D
H
C
A
F
T
T
E
Q
K
R
Y
GIGNFTKI
P
N
G
T
G
G
LEER
M
P
V
L
W
T
R
GVRTGRLT
P
N
E
F
V
A
V
T
S
T
N
I
A
K
I
L
NIYPQK
G
A
V
V
P
G
--
A
D
A
D
L
-
V
I
W
---
D
P
E
T
T
-
K
K
I
--
S
A
K
-
T
Q
H
S
S
I
-
D
Y
--------------------
N
V
F
-
E
G
F
E
L
K
G
LPI
M
T
L
S
RGRIAFDKGQVTAKPGD
G
R
F
I
E
R
E
P
NG
A
V
N
R
A
L
S
Q
W
K
E
I
V
A
P
R
K
V
E
R
S
A---------------------------------
4
HHSearch
50.66
14%
-58
- C4 -
2DKJ
-
GLYA_THET8
A:
[370-405]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
P
E
E
-
M
P
L
---
V
A
E
L
I
-
D
R
A
--
L
L
E
G
P
S
E
A
L
R
-
E
E
V
R
R
L
A
L
A
H
P
---------------------------------------------------------------------------------------------------------------
11
HHSearch
40.33
15%
-7
- C4 -
2R80
-
HBA_COLLI
A:
[2-40]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
A
N
D
-
K
S
N
---
V
K
A
V
F
-
A
K
I
--
G
G
Q
-
A
G
D
L
G
G
-
E
A
L
E
R
L
F
I
T
Y
P
Q
T
K
------------------------------------------------------------------------------------------------------------
7
HHSearch
35.25
36%
-25
- C4 -
2QFA
-
INCE_HUMAN
C:
[21-42]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
F
L
C
N
--
M
D
N
K
D
-
L
V
W
---
L
E
E
I
Q
-
E
E
A
--
E
------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
33.02
26%
33
- C3 -
2CO1
-
?
B:
[1-19]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
F
L
P
N
S
E
--
Q
-
Q
K
S
V
D
I
V
-
A
S
S
---------------------------------------------------------------------------------------------
9
HHSearch
30.29
22%
-65
- C4 -
1WGL
-
A:
[8-25]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
S
E
E
D
-
L
K
A
---
I
Q
D
M
F
-
P
N
M
--
D
Q
-----------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
28.94
18%
-17
- C4 -
1RSO
-
CSKP_RAT
B:
[99-120]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
H
A
L
T
D
--
S
S
E
K
D
-
L
D
F
---
L
H
S
V
F
-
Q
D
Q
---------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
28.42
13%
6
* C4 *
2EEM
-
MYTB_MYTED
A:
[1-34]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S
C
A
S
R
C
K
G
H
--
C
R
A
R
R
C
G
Y
Y
---
V
S
V
L
Y
-
R
G
R
--
C
Y
C
K
C
L
R
C
-----------------------------------------------------------------------------------------------------------------------------
14
Fugue
27.69
16%
25
- C4 -
2K42
-
B:
[73-108]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
H
--
M
L
P
D
V
A
Q
R
L
M
-
Q
H
L
A
E
H
G
I
Q
-
P
A
R
N
--
M
-
A
E
H
I
P
P
A
-
P
N
W
---------------------------------------------------------------------------------------------
13
Fugue
27.20
19%
45
- C4 -
2GDL
-
?
A:
[1-31]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
Q
R
G
R
F
G
-
R
F
L
R
K
I
R
R
F
R
P
K
V
T
--
I
-
T
I
Q
G
S
A
R
-
F
-----------------------------------------------------------------------------------------------
2
HHSearch
25.36
24%
51
- C4 -
2W9Y
-
?
A:
[24-63]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
F
S
S
S
--
I
T
A
D
E
-
K
P
V
---
L
H
E
V
F
-
Q
K
H
--
S
-------
C
G
-
E
M
I
D
E
V
S
K
K
H
P
E
L
G
------------------------------------------------------------------------------------------------------------
6
HHSearch
24.69
24%
-53
- C4 -
1OTR
-
CUE2_YEAST
A:
[8-24]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
H
E
S
K
-
L
S
I
---
L
M
D
M
F
-
P
A
I
--
S
------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
18.99
45%
-32
- C1 -
2WMM
-
MUKB_ECOLI
A:
[42-52]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
---
L
S
E
I
Y
-
D
D
V
--
S
------------------------------------------------------------------------------------------------------------------------------------