@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0150: (2016-03-12 )
MNNIDSIMSKYNKQQVSKIKDFLLSEIDSDNIEETIDFVKSNNQEKMGKFQDILYDGGIYSGLFIEGNQYLISSSNRKVLIIDAVSEENGVDKELTRIECSLEDFTFLLRNIKDVLRYEEF
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10....-....20....-....30......-----..40---........--50.......--.60--------------....--....70---.-....-...80...-----.------....------90........--100.......110.......120-------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MN
N
I
D
S
I
M
S
K
Y
N
K
Q
Q
-
V
S
K
I
K
D
F
L
L
S
-EIDS
D
N
I
E
E
T
I
D
-----
F
V
KS---N
N
Q
E
K
M
G
K
--
F
Q
D
I
L
YDGG--IY
S
--------------
G
L
F
I--EG
N
Q
Y
L
---
I
-SSSN-
R
K
V
L
I
I
D
A-----V------SEEN------GVDKE
L
T
R
I
E
--C
S
L
E
D
F
T
F
L
L
R
N
I
K
D
V
LRYEEF--------------------------------------------------------------
30
Fugue
90.38
19%
-40
- C4 -
1ALL
1
PHAA_ARTPT
A:
[1-160]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S
I
V
T
K
S
I
V
N
A
D
A
E
A
R
Y
L
S
P
G
E
-
L
D
R
I
K
S
F
V
T
S
-
G
E
R
R
V
R
I
A
E
T
M
T
G
A
R
E
R
I
I
K
Q
---
A
G
D
Q
L
F
G
K
--
R
P
D
V
V
-
S
P
G
--
G
N
-AYG
A
D
M
T
A
T
C
L
R
D
L
D
Y
Y
L
--
R
L
I
T
Y
G
---
I
-
V
A
G
D
-
V
T
P
I
E
E
I
G
-----
V
---------
V
------
G
V
R
E
M
Y
K
S
L
G
--
T
P
I
E
A
I
A
E
G
V
R
A
M
K
S
V
A
T
S
L
L
S
G
A
D
A
A
E
A
G
S
Y
F
D
Y
L
I
G
A
M
S-------------------------------------------
24
Fugue
65.06
22%
56
* C5 *
4FGI
-
?
B:
[23-169]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
F
T
Q
L
E
I
V
P
Q
F
G
S
P
N
M
F
G
G
E
D
E
H
V
R
V
M
F
S
N
E
D
P
N
D
D
N
P
D
-----
A
F
P
E
P
P
V
Y
L
A
D
R
D
S
G
--
N
D
C
R
I
E
D
G
G
--
I
W
S
RG------------
G
V
F
L
S
Q
D
G
R
R
V
L
M
H
E
F
-
S
G
S
S
-
A
E
L
V
S
Y
D
S
ATCKV
V
------
H
R
E
D
ISG
Q
R
W
A
V
D
K
D
G
L
R
L
G
Q
K
C
S
G
E
S
V
D
S
C
A
K
I
V
K
R
S
L
--
A
P
F
CQT-----------------------------------------------------------
4
PsiBlast_PDB
60.98
27%
-45
- C6 -
1WQA
1
?
A:
[218-277]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
P
N
E
E
N
L
K
E
F
M
E
-----
I
V
K
A
--------
L
G
A
--
D
F
G
V
A
Q
D
G
D
--
A
D
R
--------------
A
V
F
I
--
D
E
N
G
R
F
---
I
-
Q
G
D
K
-
T
F
A
L
V
A
D
A
-----
V
------
L
K
E
K
------
G
-----------------------------------------------------------------------------------------------
29
Fugue
59.63
15%
-2
* C4 *
4JKV
10
C562_ECOLX (first)
A:
[2-470]
GTAD
L
E
D
N
W
E
T
L
N
D
N
L
K
V
I
E
KADN
A
A
Q
V
K
D
A
L
T
K
M
R
A
A
A
L
D
A
Q
K
ATPPKLEDKSPDS
P
E
M
K
D
F
R
H
G
F
D
I
L
V
G
Q
I
D
D
A
L
K
L
A
N
E
GK
V
K
E
A
Q
A
A
A
E
Q
L
K
T
T
R
N
AYIQKYLSGQCEVP
L
V
R
T
DNPKSWYEDVEG
C
G
I
Q
CQNPLFT
E
A
E
H
Q
D
M
H
S
Y
I
A
A
F
G
A
V
T
G
L
C
T
L
F
T
L
A
T
F
V
A
D
WRNSNRYPAV
I
L
F
Y
V
N
A
C
F
F
V
G
S
I
G
W
L
AQFMDG
A
R
R
E
I
VCRADGTMRLGEPTSNETL
S
C
V
I
I
F
V
I
V
Y
Y
A
L
M
A
G
V
V
W
F
V
V
L
T
Y
A
W
H
T
S
F
K
A
L
G
TTYQP
G
K
T
S
Y
F
H
L
L
T
W
S
L
P
F
-
V
L
T
V
A
I
L
A
V
A
-
Q
V
D
G
D
S
V
S
G
-
I
C
-----
F
V
G
Y
---
K
N
Y
R
Y
R
A
G
--
F
--
V
L
A
P
I
G
--
L
V
-----------------
L
I
--
V
G
G
Y
F
L
---
I
-
R
G
V
M
-
T
L
F
S
I
K
S
N
-----
H
PGLLSE
K
A
A
S
------
K
I
N
E
T
M
L
R
L
G
--
I
F
G
F
L
A
F
G
F
V
L
I
T
F
S
C
H
F
Y
D
F
F
N
Q
A
E
W
E
R
S
F
R
D
Y
V
L
C
Q
A
NCEIK
N
R
P
S
L
L
V
E
K
I
N
L
F
A
M
F
G
T
G
I
A
M
S
T
W
VWT
K
A
T
L
L
I
W
R
R
T
W
C
1
PsiBlast_PDB
59.19
31%
-22
- C6 -
3W5W
1
?
A:
[155-207]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
M
G
Y
--
F
S
D
I
S
K
E
G
A
E
C
I
Y
T
--------------
G
M
M
T
--
D
T
G
G
F
T
---
Y
-
N
S
N
N
-
R
E
I
Y
F
I
I
S
-----
E
------
L
L
S
K
------
G
I
D
K
D
-------------------------------------------------------------------------------------------
23
Fugue
57.97
18%
-5
- C6 -
2LN3
-
?
A:
[1-83]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
L
T
R
T
I
T
S
Q
N
K
E
E
L
-
L
E
I
A
L
K
F
I
S
Q
-
G
L
---
D
L
E
V
E
F
D
--------
S
---
T
D
D
K
E
I
E
E
--
F
E
R
D
M
E
D
L
A
--
K
K
T
--------------
G
V
---------------------------
Q
-----
I
------
Q
K
Q
W
------
Q
G
N
K
L
R
I
R
L
K
--
G
S
L
E
H
------------
H
H
H
H
H
--------------------------------------------------------------
7
PsiBlast_PDB
57.91
29%
-18
- C6 -
4PY9
5
?
A:
[155-207]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
M
G
Y
--
F
S
D
I
S
K
E
G
A
E
C
I
Y
T
--------------
G
M
M
T
--
D
T
G
G
F
T
---
Y
-
N
S
N
N
-
R
E
I
Y
F
I
I
S
-----
E
------
L
L
S
K
------
G
I
D
K
D
-------------------------------------------------------------------------------------------
6
PsiBlast_PDB
52.10
41%
-60
- C6 -
1N8P
-
CYS3_YEAST
A:
[359-389]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
A
S
------
G
V
F
D
D
L
V
R
I
S
--
V
G
I
E
D
T
D
D
L
L
E
D
I
K
Q
A
L
K
------------------------------------------------------------------
5
PsiBlast_PDB
52.10
34%
-11
- C6 -
1VL5
-
?
A:
[210-244]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
T
T
E
K
K
Q
E
L
S
D
-----
F
I
K
S
---
K
P
T
E
Y
Y
Q
K
--
F
K
I
V
V
E
D
G
R
--
V
Y
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
49.74
26%
-5
- C6 -
1IZC
2
?
A:
[127-191]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
T
V
E
E
V
R
E
-----
F
V
K
E
---
M
Y
Y
G
P
I
G
R
R
S
F
S
P
W
T
F
S
P
G
--
I
A
D
--------------
A
S
L
F
--
P
N
D
P
Y
N
---
V
-
A
T
S
N
-
N
H
V
C
I
I
P
Q
-----
I
------
E
S
V
K
------
G
V
E
---------------------------------------------------------------------------------------------
9
PsiBlast_PDB
43.05
22%
68
- C6 -
1JEQ
-
XRCC6_HUMAN
A:
[90-169]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
E
K
D
K
N
S
-
V
N
F
K
N
I
Y
V
L
Q
-
E
L
D
N
P
G
A
K
R
I
L
E
-----
L
D
Q
F
---
K
G
Q
Q
G
Q
K
R
--
F
Q
D
M
M
G
H
G
S
--
D
Y
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
42.78
15%
37
- C4 -
2JPQ
-
Y2129_VIBPA
A:
[1-83]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
P
I
T
S
K
Y
T
D
E
Q
-
V
E
K
I
L
A
E
V
A
L
-
V
L
E
K
H
A
A
S
P
E
L
T
-----
L
M
I
A
---
G
N
I
A
T
N
V
L
--
N
Q
R
V
A
-----------------------------
A
S
Q
R
K
L
---
I
-
A
E
K
F
-
A
Q
A
L
M
S
S
L
-----
E
------
T
P
K
T
------
H
L
E
H
-------------------------
H
H
H
H
H
--------------------------------------------------------------
19
HHSearch
42.10
15%
-53
- C7 -
2VW8
-
Y1000_PSEAE
A:
[10-43]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
Q
--
L
D
D
D
L
C
L
L
G
--
D
V
---------------------
Q
V
P
V
F
L
---
L
-
R
L
G
E
-
A
S
W
A
L
V
E
G
-----
G
------
I
---------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
41.90
22%
75
- C6 -
1JEY
-
XRCC6_HUMAN
A:
[90-150]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
E
K
D
K
N
S
-
V
N
F
K
N
I
Y
V
L
Q
-
E
L
D
N
P
G
A
K
R
I
L
E
-----
L
D
Q
F
---
K
G
Q
Q
G
Q
K
R
--
F
Q
D
M
M
G
H
G
S
--
D
Y
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
41.60
14%
35
- C5 -
1Q38
-
A:
[1-89]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
R
G
S
N
A
P
Q
-
P
S
H
I
S
K
Y
I
L
R
-
W
R
P
K
N
S
V
G
R
W
K
E
-----
A
T
I
P
---
G
H
L
N
S
---------
Y
T
I
K
G
--
L
K
P
--------------
G
V
V
Y
--
E
G
Q
L
I
S
---
I
Q
Q
Y
G
H
-
Q
E
V
T
R
F
D
F
-----
T
------
T
T
S
T
------
S
T
P
G
S
R
S
H
---------------------
H
H
H
H
H
--------------------------------------------------------------
28
Fugue
39.32
20%
40
* C6 *
4XPM
-
?
A:
[1-39]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
P
D
S
A
K
I
S
K
E
Q
-
L
K
K
L
H
S
N
I
L
N
-
E
I
F
S
Q
S
Q
V
N
K
P
G
-----
P
L
T
V
---
P
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
38.37
23%
9
- C6 -
3G2B
-
PQQD_XANCP
A:
[59-89]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
Q
I
A
Q
T
-----
L
------
A
A
E
F
------
D
A
D
A
S
--
E
I
E
--
T
D
V
I
E
L
T
T
T
L
H
Q
------------------------------------------------------------------------
21
HHSearch
37.51
23%
-44
* C7 *
1QH5
-
GLO2_HUMAN
A:
[11-33]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
N
Y
M
Y
L
---
V
-
I
D
D
E
T
K
E
A
A
I
V
D
P
-----
V
------
Q
P
--------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
32.06
55%
81
- C6 -
3EFY
-
?
A:
[260-279]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
Q
L
F
-
E
Y
D
T
D
N
I
E
K
N
I
E
-----
I
I
K
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
31.20
33%
53
- C6 -
4I78
-
?
C:
[50-85]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
K
V
N
S
I
I
D
K
M
N
S
Q
F
-
E
S
N
I
K
E
F
N
R
L
-
E
L
R
I
Q
H
L
S
D
R
V
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------