@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0151: (2016-03-12 )
LDQKIKDIYHIDDSFSIDNEKYNKWLKSLLNKTRGEITENDVYTMLLQQELEDLAIEKAIEFIKIDPLAGEMWDGQFLEQLAGISVDKLVAYKEELQKLIPYMDNQINEILWDFETEKEEFLFRYAKFKDKVANL
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10.-.......20........30........40.....---...50........60........70...--......80.......--.90........100.......110...----...---.120..-----.....130...-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LDQ
K
I
K
D
IYHID-DSFSI
D
N
E
K
Y
N
K
W
L
K
S
L
L
N
K
TRGEITE
N
D
V
Y
T
M
L
---
L
Q
Q
E
L
E
D
L
A
I
E
K
A
I
E
F
I
K
IDPLAG-EMW--
D
G
Q
F
L
E
Q
L
AGI
S
V
D
K
--
L
V
A
Y
K
E
E
L
Q
K
L
I
P
Y
M
D
N
Q
I
N
E
I
L
WDFE----T
E
K
---
E
E
F
L
F
R
-----
Y
A
K
F
K
D
K
VANL-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
Fugue
82.87
17%
-42
- C3 -
1JF8
3
ARSC_STAAU
A:
[2-131]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
K
K
T
I
Y
F
I
S
-
T
G
N
S
A
R
S
Q
M
A
E
G
W
G
K
E
I
L
G
E
------
G
W
N
V
Y
S
A
G
---
I
E
T
H
G
V
N
P
K
A
I
E
A
M
K
E
V
D
I
D
I
----
S
N
H
--
T
S
D
L
I
D
N
D
I
L
K
Q
S
D
L
--
V
V
T
L
C
S
D
A
D
N
N
C
P
I
L
P
P
N
V
K
K
E
H
W
G
F
D
DPAG
K
E
W
---
S
E
F
Q
R
V
-----
R
D
E
I
K
L
A
I
E
K
F
K
L
R--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
73.08
20%
9
- C3 -
3BT3
-
?
A:
[134-264]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
R
G
Y
V
V
R
E
N
G
P
-
V
Y
F
T
K
D
M
D
K
T
V
K
W
F
E
E
I
L
G
W
-
S
G
D
I
V
A
R
D
D
E
G
F
G
---
D
Y
G
C
V
F
D
Y
P
S
E
V
A
V
A
----
H
P
F
R
G
F
H
L
F
--
K
G
E
P
I
K
G
V
A
G
F
M
M
--------
I
E
G
I
D
A
L
H
K
Y
V
K
E
N
G
W
D
Q
I
S
D
I
Y
----
T
Q
P
W
G
A
R
E
C
S
I
T
T
TDG
C
I
L
R
F
F
E
S
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
68.92
13%
-37
- C3 -
1JYO
-
SICP_SALTY
A:
[1-130]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
Q
A
H
Q
D
I
I
A
N
I
G
-
E
K
L
G
L
P
L
T
-
F
D
D
------
N
N
Q
C
L
L
L
L
D
S
D
I
F
T
S
I
---
E
A
K
D
--
D
I
W
L
L
N
G
M
-
I
I
P
L
S
P
V
C
G
-
D
S
I
--
W
R
Q
I
M
V
I
N
G
E
L
A
A
N
N
E
G
T
L
A
Y
I
D
A
A
E
T
L
L
L
I
H
A
I
T
D
L
T
N
T
Y
H
I
I
----
S
Q
L
---
E
S
F
V
N
Q
-----
Q
E
A
L
K
N
I
L
Q
E
Y
AKV--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
68.88
13%
-42
- C3 -
4WHE
1
?
A:
[3-142]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
F
S
R
F
A
D
I
V
N
A
N
I
N
A
L
L
E
D
P
Q
K
L
V
R
L
M
I
Q
E
M
E
D
T
L
V
E
V
R
S
T
S
A
R
A
L
A
---
E
K
K
Q
L
T
R
R
I
E
Q
A
S
A
R
E
V
E
W
Q
E
K
A
E
-
L
A
L
L
K
E
R
E
D
L
A
R
A
A
L
I
E
K
Q
K
--
L
T
D
L
I
K
S
L
E
H
E
V
----
T
L
V
D
D
T
L
A
R
M
K
----
K
E
I
---
G
E
L
E
N
K
-----
L
S
E
T
R
A
R
Q
Q
A
L
M
LR--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
68.61
34%
-10
- C5 -
1KBI
1
CYB2_YEAST
A:
[80-147]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
G
P
L
Q
G
-
S
M
P
--
P
E
L
V
C
P
P
Y
A
P
G
E
T
K
E
--
D
I
A
R
K
E
Q
L
K
S
L
L
P
P
L
D
N
I
I
N
--
L
Y
D
F
E
----
Y
L
A
---
S
Q
T
L
T
K
-----
Q
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
68.05
34%
-9
- C5 -
1FCB
1
CYB2_YEAST
A:
[80-157]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
G
P
L
Q
G
-
S
M
P
--
P
E
L
V
C
P
P
Y
A
P
G
E
T
K
E
--
D
I
A
R
K
E
Q
L
K
S
L
L
P
P
L
D
N
I
I
N
--
L
Y
D
F
E
----
Y
L
A
---
S
Q
T
L
T
K
-----
Q
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
67.47
34%
5
- C5 -
2OZ0
1
CYB2_YEAST
A:
[80-157]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
G
P
L
Q
G
-
S
M
P
--
P
E
L
V
C
P
P
Y
A
P
G
E
T
K
E
--
D
I
A
R
K
E
Q
L
K
S
L
L
P
P
L
D
N
I
I
N
--
L
Y
D
F
E
----
Y
L
A
---
S
Q
T
L
T
K
-----
Q
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
66.18
34%
-12
- C5 -
1LTD
1
CYB2_YEAST
A:
[75-155]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
G
P
L
Q
G
-
S
M
P
--
P
E
L
V
C
P
P
Y
A
P
G
E
T
K
E
--
D
I
A
R
K
E
Q
L
K
S
L
L
P
P
L
D
N
I
I
N
--
L
Y
D
F
E
----
Y
L
A
---
S
Q
T
L
T
K
-----
Q
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
61.77
24%
-18
- C5 -
3AJB
-
PEX3_HUMAN
A:
[263-361]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
N
E
T
R
D
M
L
E
S
P
D
F
S
T
V
L
N
T
C
L
N
R
G
F
S
R
L
-
L
D
N
M
A
E
F
F
R
--
P
---------------
S
L
S
S
V
S
L
----------
P
L
A
K
I
I
P
I
V
N
G
Q
I
H
S
V
C
S
E
T
P
----
S
H
F
---
V
Q
D
L
L
T
-----
M
E
Q
V
K
D
F
A
A
N
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
59.23
24%
-37
- C5 -
3MK4
1
PEX3_HUMAN
A:
[224-322]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
N
E
T
R
D
M
L
E
S
P
D
F
S
T
V
L
N
T
C
L
N
R
G
F
S
R
L
-
L
D
N
M
A
E
F
F
R
----------------------
V
S
L
P
----------
L
A
K
I
I
P
I
V
N
G
Q
I
H
S
V
C
S
E
T
P
----
S
H
F
---
V
Q
D
L
L
T
-----
M
E
Q
V
K
D
F
A
A
N
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
56.83
46%
-33
- C5 -
4O1L
-
ADK_HUMAN
A:
[207-233]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
K
E
S
L
M
K
V
M
P
Y
V
D
-----
I
L
F
G
N
E
----
T
E
A
---
A
T
F
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
55.57
34%
40
- C5 -
1SZE
-
CYB2_YEAST
A:
[100-160]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
E
T
K
E
--
D
I
A
R
K
E
Q
L
K
S
L
L
P
P
L
D
N
I
I
N
--
L
Y
D
F
E
----
Y
L
A
---
S
Q
T
L
T
K
-----
Q
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
55.08
34%
30
- C5 -
1SZG
-
CYB2_YEAST
A:
[100-160]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
E
T
K
E
--
D
I
A
R
K
E
Q
L
K
S
L
L
P
P
L
D
N
I
I
N
--
L
Y
D
F
E
----
Y
L
A
---
S
Q
T
L
T
K
-----
Q
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
55.00
34%
39
- C5 -
1SZF
-
CYB2_YEAST
A:
[100-157]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
E
T
K
E
--
D
I
A
R
K
E
Q
L
K
S
L
L
P
P
L
D
N
I
I
N
--
L
Y
D
F
E
----
Y
L
A
---
S
Q
T
L
T
K
-----
Q
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
54.95
46%
-22
- C5 -
2I6A
-
ADK_HUMAN
A:
[206-230]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
K
E
S
L
M
K
V
M
P
Y
V
D
-----
I
L
F
G
N
E
----
T
E
A
---
A
T
F
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
54.77
46%
-24
- C5 -
2I6B
1
ADK_HUMAN
A:
[206-230]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
K
E
S
L
M
K
V
M
P
Y
V
D
-----
I
L
F
G
N
E
----
T
E
A
---
A
T
F
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
52.72
46%
-19
- C5 -
1BX4
1
ADK_HUMAN
A:
[206-230]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
K
E
S
L
M
K
V
M
P
Y
V
D
-----
I
L
F
G
N
E
----
T
E
A
---
A
T
F
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
51.08
43%
42
- C5 -
1QCW
-
CYB2_YEAST
A:
[5-64]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
A
R
K
E
Q
L
K
S
L
L
P
P
L
D
N
I
I
N
--
L
Y
D
F
E
----
Y
L
A
---
S
Q
T
L
T
K
-----
Q
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
50.11
43%
57
- C5 -
1KBJ
-
CYB2_YEAST
A:
[7-60]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
A
R
K
E
Q
L
K
S
L
L
P
P
L
D
N
I
I
N
--
L
Y
D
F
E
----
Y
L
A
---
S
Q
T
L
T
K
-----
Q
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
49.64
9%
-55
- C3 -
2OCE
-
?
A:
[2-730]
D
S
I
N
T
R
I
A
E
E
L
S
A
LPSGRVQ
P
Q
Q
V
A
A
A
V
A
L
L
D
E
GST
V
P
F
I
A
R
YRKEVTGSLD
D
T
Q
L
R
M
L
E
E
R
L
R
Y
L
R
E
L
E
E
R
R
G
A
I
L
A
S
I
E
E
Q
GKLT
P
E
L
A
R
D
I
K
L
ADT
K
T
R
L
E
D
L
Y
LPYKQKRRT
K
G
Q
I
A
L
E
A
GL
G
A
L
A
D
A
L
F
D
D
PTLV
P
E
S
E
A
A
R
F
VDAEKGFAD
V
K
A
V
L
E
G
A
K
Y
I
L
M
E
R
F
A
E
D
A
T
L
L
D
K
L
R
V
F
M
K
N
E
A
T
L
T
A
R
V
V
PGKEQEGAKFSDYF
E
H
D
E
P
LKSAP
S
H
R
A
L
A
I
F
R
G
R
N
E
GV
L
S
A
S
L
K
V
GEEAP
G
T
L
H
P
C
E
V
M
I
A
E
R
F
GLSNQGRAA
D
K
W
L
A
E
V
V
R
W
T
W
K
V
K
L
Y
T
H
L
E
T
D
L
F
G
E
L
R
D
G
A
E
D
E
A
I
S
V
F
A
R
N
L
H
D
L
L
L
AAPAGP
R
A
T
L
G
L
DPGLRT
G
V
K
V
A
V
V
D
ATGKLL
D
T
A
T
V
Y
PHAPKNQ
W
D
Q
T
L
A
V
L
A
A
L
C
A
K
-
H
Q
V
E
--
L
I
A
I
G
N
G
T
A
S
R
E
T
D
K
L
A
G
E
L
I
K
K
Y
P
G
M
K
L
T
K
I
M
---
V
S
--------
E
A
G
A
S
V
Y
S
A
S
E
L
A
A
-
K
E
F
--
P
E
L
D
V
S
L
R
G
A
V
S
I
A
R
--
R
L
Q
--
D
P
L
A
E
L
V
K
I
E
P
K
S
I
G
V
G
Q
Y
Q
H
D
----
V
S
Q
---
L
K
L
A
R
S
-----
L
D
A
V
V
E
D
C
V
N
A
V
GVDVNTAS
A
A
L
L
A
R
ISGLNST
L
A
Q
N
I
V
A
H
R
D
A
NGAFRTRDELKKVSRLG
E
K
T
F
E
Q
AAGF
L
R
V
M
NGDNPLDASAVHPET
Y
P
L
V
Q
R
IAADTERDIRSLIGDSAFLKRLDPKKFTDETFGLP
T
V
T
D
I
L
K
E
L
DKPGRDPRPEFKTAEFQEGVESLKDLKP
G
M
V
L
E
G
V
V
TNVTNF
G
A
F
V
D
IGVH
Q
D
G
L
V
H
ISALSEKFVKDPYEVVKAG
D
I
V
K
V
K
VMEVDIPRN
R
V
G
L
S
MRMSDTPG