@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0161: (2016-03-12 )
MNESNGSMELYLREHTEEIINNWLSKIYENTYTSFVYSPQYKDELRADSEQTADLIISYFAGKKAFFEKLDKWLDNMYARRMENEVPLPEVITTLDKLRREFVTAVGDFCIHNDEVSKCEFSSSMAMVNHGFDRINEAFSAMYYNDIVKHLEQQHRLIEEISTPVISITDKLAILPLMGRVDRERAEKLSEITANKCVHLGVEQLCIDLSGITYFDDALGEMLTNLVTMLKLLGVEAFISGIQPKMAQQINRVDLNLSIPAYHSLKAVLQDQTRTI
Atome Classification :
(20 SA)
----.........10....-----------------------....20-----.........--30.....-.--.-----.------40.....--...50...-------.....60.-..-.....70........80....------------....90.......-----.100.-----..---...-----.110--------------........120-----...----.....130.-------......140.......--------------150----------........160.......170--....---------------....---180....--...190......--------------------------------------.200.......--210.......220.......230-...---------------------....240--........--------250.-......---260--...-......---270....----------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----MNESNG
S
M
E
L
Y
L
R
E
H
-----------------------
T
E
E
I
I
------
N
N
W
L
S
K
I
Y
E
--
N
T
Y
T
S
F
V
-Y--S-----P------Q
Y
K
D
E
LR--AD
S
E
Q
T
A
D
-------
L
I
I
S
Y
FAG-
K
K
-
A
F
F
E
K
L
D
K
W
L
D
N
M
Y
A
R
R
MENE------------VP
L
P
E
V
I
T
T
L
D
K
L
-----
R
R
E
F
V
-----
T
A
---
V
G
D
-----
F
CI---------------HNDEV
S
K
CEF------SS
S
----
M
A
M
V
N
H
G
F
D
-------
R
I
N
E
A
F
S
A
M
Y
Y
N
D
I
V
K
--------------
H
L
-----------
E
Q
Q
H
R
L
I
E
E
IST
P
V
I
SITD
K
---
L
A
I
L
---------------
P
LMG---RV
D
R
E
R
A
--
E
K
L
S
E
I
T
A
N
K
C
V
--------------------------------------
H
L
G
V
E
Q
L
C
I
DL--SG
I
T
Y
F
D
D
A
L
G
E
M
L
T
N
L
V
T
M
L
K
L
-
L
G
V
---------------------
E
A
F
I
SG---I
Q
P
K
M
A
Q
Q
--------
I
N
R
V
-
D
L
N
LSI---
P
----
A
Y
H
-
S
L
K
A
V
L
---
Q
D
QTRTI----------------
24
HHSearch
66.61
17%
-124
- C7 -
1TH8
1
SP2AA_GEOSE
B:
[8-114]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
V
K
Q
D
---
V
L
I
V
---------------
R
L
S
G
---
E
L
D
H
H
T
A
--
E
E
L
R
E
Q
V
T
D
V
L
E
--------------------------------------
N
R
A
I
R
H
I
V
L
N
L
--
G
Q
L
T
F
M
D
S
S
G
L
G
V
I
L
G
R
Y
K
Q
I
K
N
-
V
G
G
---------------------
Q
M
V
V
C
A
---
V
S
P
A
V
K
R
L
--------
F
D
M
S
-
G
L
F
K
-
I
---
I
----
R
V
E
A
D
E
Q
F
A
L
---
Q
A
L
G
-------------------
26
HHSearch
65.22
21%
-115
- C7 -
1SBO
-
Y1442_THEMA
A:
[10-110]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
Q
D
D
---
K
A
I
V
---------------
R
V
Q
G
---
D
I
D
A
Y
N
S
--
S
E
L
K
E
Q
L
R
N
F
I
S
--------------------------------------
T
T
S
K
K
K
I
V
L
D
L
--
S
S
V
S
Y
M
D
S
A
G
L
G
T
L
V
V
I
L
K
D
A
K
I
-
N
G
K
---------------------
E
F
I
L
S
S
---
L
K
E
S
I
S
R
I
--------
L
K
L
T
-
H
L
D
K
-
I
---
F
----
K
I
T
D
T
V
E
E
A
---------------------------
48
Fugue
63.08
19%
-58
- C6 -
4WID
1
?
A:
[10-362]
KDMA
L
Q
H
A
V
D
L
L
E
K
M
L
A
D
E
E
KLTEFNLGDPLFESAND
D
P
I
K
T
L
E
E
I
I
------
Q
E
G
D
D
V
V
G
A
--
H
Q
L
V
V
T
Q
-
I
--
K
-----
L
------
R
V
Q
R
N
R
R
--
L
A
D
E
I
I
R
E
-------
Q
L
T
D
I
R
K
V
-
F
S
-
D
K
F
E
K
L
E
Q
G
I
Q
N
S
Y
L
L
L
D
K
L
K
------------
T
P
F
Q
D
M
R
C
L
F
E
V
A
-----
N
E
Q
F
N
D
TPVP
P
Q
---
Y
K
E
-----
F
M
V
---------------
C
L
K
Q
I
V
Q
Y
A
V
------
N
S
S
SL
E
K
F
V
M
L
I
T
K
K
D
-------
D
I
K
D
R
V
T
Y
T
C
M
K
Y
L
L
M
--------------
A
M
Q
G
TGGPKAI
N
N
E
E
H
A
K
L
F
F
Q
L
S
N
Y
D
D
L
T
D
A
N
---
H
D
G
L
---------------
E
L
I
K
---
K
L
D
K
E
Q
K
--
E
V
--
A
F
H
V
N
N
F
T
--------------------------------------
H
L
-
V
T
T
L
G
M
A
L
Y
K
E
G
H
Q
K
N
D
E
A
M
L
G
M
H
T
P
I
T
M
L
S
D
Q
-
V
R
V
L
I
L
Y
L
I
D
E
I
V
H
A
I
H
T
NSNQS
N
D
E
L
I
D
G
---
L
K
P
K
V
R
I
V
--------
I
N
E
F
-
H
A
T
L
M
M
---
G
IDK
M
K
F
Y
-
S
L
N
E
L
R
---
E
I
V
N
D
K
I
----------------
23
HHSearch
62.99
15%
-128
* C7 *
2KA5
-
Y1081_THEMA
A:
[17-124]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
I
V
D
D
---
V
V
I
L
---------------
M
P
N
K
---
E
L
N
I
E
N
A
--
H
L
F
K
K
W
V
F
D
E
F
L
--------------------------------------
N
K
G
Y
N
K
I
F
L
V
L
--
S
D
V
E
S
I
D
S
F
S
L
G
V
I
V
N
I
L
K
S
I
S
S
-
S
G
G
---------------------
F
F
A
L
V
S
---
P
N
E
K
V
E
R
V
--------
L
S
L
T
-
N
L
D
R
-
I
---
V
----
K
I
Y
D
T
I
S
E
A
M
---
E
E
V
R
R
------------------
21
HHSearch
61.28
11%
-139
- C7 -
1H4X
1
SP2AA_LYSSH
A:
[8-112]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
T
R
E
---
T
V
V
I
---------------
R
L
F
G
---
E
L
D
H
H
A
V
--
E
Q
I
R
A
K
I
S
T
A
I
F
--------------------------------------
Q
G
A
V
T
T
I
I
W
N
F
--
E
R
L
S
F
M
D
S
S
G
V
G
L
V
L
G
R
M
R
E
L
E
A
-
V
A
G
---------------------
R
T
I
L
L
N
---
P
S
P
T
M
R
K
V
--------
F
Q
F
S
-
G
L
G
P
-
W
---
M
-----
M
D
A
T
E
E
E
A
I
---
D
R
V
R
-------------------
51
Fugue
60.18
20%
-45
- C2 -
4ZOX
-
SQT1_YEAST
A:
[3-381]
------
M
S
N
N
S
L
-
T
Y
F
D
K
H
-----------------------
T
D
S
V
F
A
I
G
H
H
P
N
L
P
L
V
C
T
G
G
--
G
D
N
L
A
H
L
-
W
--
T
SHSQP
P
------
K
F
A
G
T
L
T
GY
G
E
S
V
I
S
C
S
F
T
SEGG
F
L
V
T
A
D
M
S
G
--
K
-
V
L
V
H
M
G
Q
K
G
G
A
Q
W
K
L
A
S
Q
M
Q
E
------------
V
E
E
I
V
W
L
K
T
H
P
T
I
-----
A
R
T
F
A
-----
F
G
---
A
T
D
G
S
V
W
C
Y
Q
I
N
EQDG
S
L
E
Q
L
M
S
G
F
V
H
Q
Q
D
C
S
M
G
E
F
I
NTDKG
E
N
T
----
L
E
L
V
T
C
S
L
D
-------
S
T
I
V
A
W
N
C
F
T
G
Q
Q
L
F
K
I
T
QAEIKGLEAPWI
S
L
-----------
S
L
A
P
E
T
L
T
K
G
N
S
G
V
V
A
C
G
S
N
NG
L
L
A
V
I
N
CNNGGAIL
H
L
S
T
V
I
E
L
K
P
---
E
Q
D
E
L
D
A
SI
E
S
I
S
W
S
S
K
F
S
L
M
--------------------------------------
A
I
G
L
V
C
G
E
I
L
L
--
Y
D
T
S
A
W
R
V
R
H
K
F
V
L
E
D
S
V
T
K
L
M
F
-
D
N
D
---------------------
D
L
F
A
S
C
---
I
N
G
K
V
Y
Q
F
NARTGQEK
F
V
C
V
-
G
H
N
M
G
V
---
L
----
D
F
I
-
L
L
H
P
V
A
NTG
T
E
Q
K
R
K
V
I
T
A
G
DEG
V
S
L
V
F
E
V
P
N
25
HHSearch
58.34
17%
-112
- C7 -
3NY7
2
?
A:
[6-118]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
L
A
P
V
V
V
D
V
P
D
D
---
V
L
V
L
---------------
R
V
I
G
---
P
L
F
F
A
A
A
--
E
G
L
F
T
D
L
E
S
R
L
----------------------------------------
E
G
K
R
I
V
I
L
K
W
--
D
A
V
P
V
L
D
A
G
G
L
D
A
F
Q
R
F
V
K
R
L
P
--
E
G
C
---------------------
E
L
R
V
C
N
---
V
E
F
Q
P
L
R
T
--------
M
A
R
A
-
G
I
Q
P
-
I
PGR
L
----
A
F
F
P
N
R
R
A
A
M
---
A
D
L
--------------------
19
HHSearch
57.11
17%
-60
- C7 -
3PMD
2
?
A:
[4-152]
----
M
E
A
T
K
R
Y
L
C
L
Y
L
K
E
S
-----------------------
Q
E
K
F
I
------
S
N
W
K
K
R
I
L
V
--
H
E
H
--------
D
-----
P
------
Y
K
N
-
E
I
I
--
K
N
G
T
H
L
L
H
-------
V
F
T
M
Y
M
R
E
-
E
--
I
N
L
Q
D
I
E
D
I
S
K
K
I
A
Q
E
R
M
D
A
K
------------
V
N
I
A
D
F
I
Y
N
T
N
E
G
-----
K
K
E
I
L
-----
N
T
---
L
F
L
-----
L
N
--------------------
P
T
G
Q
E
C
------
K
V
V
----
I
E
Q
I
N
L
F
F
D
-------
H
L
I
Y
S
T
I
Y
S
Y
Y
K
L
K
K
E
--------------
Y
I
-----------
H
S
Y
Y
E
L
K
K
K
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
55.37
22%
-43
- C7 -
3PMC
18
Y6575_BACAN
A:
[14-138]
--------------
Y
L
K
E
R
-----------------------
Q
E
K
F
I
------
S
D
W
K
K
K
V
I
I
--
R
E
---------
R
-----
D
------
P
Y
K
E
E
I
I
--
K
N
G
E
H
L
L
S
-------
A
F
I
M
Y
------------------------
L
K
E
E
------------
I
S
L
Q
E
I
E
I
T
S
K
K
I
-----
A
R
E
R
I
-----
D
A
KVN
I
A
E
-----
F
-
I
---------------
H
N
T
N
V
A
K
I
E
I
------
M
N
I
----
L
T
L
L
N
P
D
L
Q
Q
Y
Q
A
L
V
K
K
I
N
Q
F
F
D
H
L
I
Y
Y
T
V
H
S
--------------
Y
Y
-----------
E
Q
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
HHSearch
54.86
13%
-75
- C7 -
2C7L
2
PHEB_MASLA
B:
[39-171]
----------
D
V
V
N
R
L
T
S
N
-----------------------
A
S
S
I
V
------
A
N
A
Y
R
A
L
V
A
E
R
P
Q
V
F
N
P
G
G
P
CF
H
-----
H
------
R
N
Q
A
A
C
I
--
R
D
L
G
F
I
L
R
-------
Y
V
T
Y
S
V
L
A
G
D
T
S
V
M
D
D
R
C
L
N
G
L
R
E
T
Y
Q
A
L
---
G
------------
T
P
G
D
A
V
A
S
G
I
K
K
M
-----
K
E
A
A
L
-----
K
I
---
A
N
D
-----
P
N
G
------------------
I
T
K
G
-
D
C
------
S
Q
L
----
M
S
E
L
A
S
Y
F
D
-------
R
A
A
A
A
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
54.85
28%
-175
- C7 -
3ZXN
-
?
A:
[46-98]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
I
D
I
--
S
A
L
E
V
V
D
E
F
V
T
R
V
L
I
E
I
S
R
L
A
E
L
-
L
G
L
---------------------
P
F
V
L
T
G
---
I
K
P
A
V
A
I
T
--------
L
T
E
M
-
G
L
D
L
----------------------------------------------
42
Fugue
54.54
18%
-122
- C7 -
2VY9
-
?
A:
[6-119]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
I
L
K
V
D
D
----
Y
W
V
V
---------------
A
I
E
E
---
T
L
H
D
Q
S
V
--
I
Q
F
K
E
E
L
L
H
N
I
T
--------------------------------------
G
V
A
G
K
G
L
V
I
D
I
--
S
A
L
E
V
V
D
S
F
V
T
R
V
L
I
E
I
S
R
L
A
E
L
-
L
G
L
---------------------
P
F
V
L
T
G
---
I
K
P
A
V
A
I
T
--------
L
T
-
E
M
G
L
D
L
R
G
M
--
A
----
T
A
L
-
N
L
Q
K
G
L
---
D
K
L
K
N
L
A
R
---------------
27
HHSearch
53.51
12%
-91
- C7 -
3T6O
-
?
A:
[12-120]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
A
Q
---
V
T
V
I
---------------
S
F
P
A
VFQ
R
L
R
E
T
E
V
--
E
Q
I
A
S
T
F
L
A
A
M
Q
--------------------------------------
G
A
Q
P
R
K
V
L
I
D
L
--
E
G
V
E
F
F
G
S
S
F
I
E
L
L
V
R
G
W
K
R
I
K
E
D
Q
Q
G
---------------------
V
F
A
L
C
S
---
V
S
P
Y
C
V
E
V
--------
L
Q
V
T
-
H
I
D
E
-
V
---
W
----
P
R
Y
S
T
K
Q
E
A
L
---
L
A
M
A
-------------------
30
HHSearch
53.42
19%
-54
- C7 -
3PMC
19
Y6575_BACAN
A:
[8-135]
--------
K
C
L
L
C
R
Y
L
K
E
R
-----------------------
Q
E
K
F
I
------
S
D
W
K
K
K
V
I
I
R
-
E
R
D
---------------------
P
Y
K
E
E
I
I
--
K
N
G
E
H
L
L
S
-------
A
F
I
M
Y
L
K
E
-
E
--
I
S
L
Q
E
I
E
I
T
S
K
K
I
A
R
E
R
I
D
A
K
------------
V
N
I
A
E
F
I
H
N
T
N
V
A
K
I
E
I
M
N
I
L
T
L
-----
L
N
---------------------------------
P
D
L
Q
Q
Y
------
Q
A
L
----
V
K
K
I
N
Q
F
F
D
-------
H
L
I
Y
Y
T
V
H
S
Y
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
41
HHSearch
52.48
11%
-84
- C7 -
2VEB
5
?
A:
[42-191]
--------
I
Q
K
A
G
E
V
L
E
D
Q
-----------------------
V
E
E
I
L
------
D
T
W
Y
G
F
V
G
S
H
-
P
H
L
L
Y
Y
F
-
T
--
S
-----
P
DGTPN
E
K
Y
L
A
A
V
R
-----
K
R
F
S
R
-------
W
I
L
D
T
S
N
R
----
S
Y
D
Q
A
W
L
D
Y
Q
Y
E
I
G
L
R
H
H
R
T
K
KNQTDNVESVPN
I
G
Y
R
Y
L
V
A
F
I
Y
P
I
-----
T
A
T
M
K
-----
P
F
---
L
A
R
-----
K
--------------------
G
H
T
P
E
E
V
------
E
K
M
----
Y
Q
A
W
F
K
A
T
T
-------
L
Q
V
A
L
W
S
Y
P
Y
V
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
50.88
28%
-154
- C7 -
3ZTB
-
?
A:
[46-98]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
I
D
I
--
S
A
L
E
V
V
D
S
F
V
T
R
V
L
I
E
I
S
R
L
A
E
L
-
L
G
L
---------------------
P
F
V
L
T
G
---
I
K
P
A
V
A
I
T
--------
L
T
E
M
-
G
L
D
L
----------------------------------------------
31
HHSearch
49.95
15%
-117
- C7 -
3AGD
-
?
A:
[323-448]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
G
D
---
R
V
F
L
---------------
H
L
Q
G
---
V
I
R
F
G
G
A
--
E
A
V
L
D
A
L
T
D
L
R
T
GWDAAVY
P
R
W
Q
E
A
A
A
D
R
A
A
L
S
A
A
T
GGGA
V
H
E
A
A
A
A
A
AN
D
G
P
I
R
T
V
V
L
N
L
--
A
R
V
D
R
I
D
D
V
G
R
R
L
I
A
E
G
V
R
R
L
Q
A
-
D
G
V
---------------------
R
V
E
V
E
D
---
P
E
R
I
L
------------------------------------------------------------------
35
HHSearch
48.95
13%
-82
- C7 -
2W31
3
?
A:
[20-152]
-------
L
L
G
S
L
F
P
L
A
E
T
N
-----------------------
K
E
R
L
A
------
D
Q
F
Y
D
Y
L
L
G
I
-
P
E
T
A
E
F
L
-
K
--
E
-----
D
------
L
V
L
Q
K
L
K
--
Q
T
H
Q
D
W
F
V
-------
S
L
---
F
A
G
----
S
Y
D
N
R
Y
I
H
N
L
Q
K
I
G
H
A
H
V
R
V
G
------------
L
N
A
H
Y
V
N
V
A
M
N
V
V
-----
R
Q
F
T
L
-----
S
I
---
I
Q
D
-----
N
F
-------------------
P
-
D
P
E
E
R
------
R
Q
R
----
R
E
A
V
E
K
I
L
D
-------
I
N
L
D
I
M
S
A
S
Y
R
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
47.87
28%
-106
- C7 -
1VC1
-
Y1442_THEMA
A:
[12-91]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
D
---
K
A
I
V
---------------
R
V
Q
G
---
D
I
D
A
Y
N
S
--
S
E
L
K
E
Q
L
R
N
F
I
S
--------------------------------------
T
T
S
K
K
K
I
V
L
D
L
--
S
S
V
S
Y
M
D
S
A
---
G
L
G
T
L
V
V
I
L
K
--------------------------
D
A
K
I
N
G
K
E
F
I
L
S
S
L
K
E
S
--------
I
S
R
I
---------------------------------------------------
4
PsiBlast_PDB
46.99
28%
-138
- C7 -
2VY9
-
?
A:
[46-98]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
I
D
I
--
S
A
L
E
V
V
D
S
F
V
T
R
V
L
I
E
I
S
R
L
A
E
L
-
L
G
L
---------------------
P
F
V
L
T
G
---
I
K
P
A
V
A
I
T
--------
L
T
E
M
-
G
L
D
L
----------------------------------------------