@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0163: (2016-03-12 )
MLKIVGVRFKDVGKIYYFSPGELEITENQGVIVENAQGIEFGKTVIEPRYVDEEDVVLPLKKVLRIATEADYKCVAENGDSCQKAFLLCDEKIRERELEMSLVDVDYTFDRNKIIFYFTAEGRVDFRELVKDLASVFRTRIELRQIGVRDEAKLLGGIGPCGRMLCCSTFLGDFEPVSIKMAKDQNLSLNPTKISGLCGRLMCCLKYENDEYEQAKREMPDVGVKVKTPEGAEARVSGINLLSRILQVSLPEEETVIEYELDELRPYNEFLKQPAKS
Atome Classification :
(20 SA)
----------------.........10...-.....20....----...-.30......-.---------.40........50--------------...-.....60-----.-----..-....-..70........80........---90....-------------------...-.100........110......-.-----120-----.-......130--........140------..----------.......150....------------------...160-...---...-..170.....-------------------------.---------.180..-..---..-.---------190..-.....200---------.----.......-.210.....---------..220.....-...--230.--....----.----..240.-.---.....----------250......--.260.....------.-.270......-----------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------M
L
K
I
V
G
V
R
F
K
DV
G
K
-
I
Y
Y
FSPG
E
L
E
I
----TEN-Q
G
V
I
V
ENAQ-G---------IEF
G
K
TVIEPRYV--------------DE
E
-
D
V
V
L
P
L
------
K
-----
K
V
-
L
R
I
A-TEAD
Y
K
C
VAENG
D
S
C
Q
K
A
F
L
L
C
---
D
E
K
I
R
E
-------------------
R
E
L-
E
M
-
S
L
V
D
V
D
Y
T
FDR
N
K
I
I
F
Y
F
-T-----AEG-----R-V
D
F
R
E
L
V
K
---
D
L
A
S
V
F
R
T
R
--------
I
E
----------
L
R
QIGV
R
D
E
A
K
L
LG------------------GI
G
P
C
--
G
R
M
---
L
C
C
-
S
T
F
LGDFE
P
V
-------------------------
S
---------
I
K
M
AKD-QN---LS-L---------N
P
T
K
I
-
S
G
L
C
G
R
-----------
L
----
M
C
CLKYE-N
D
E
Y
E
Q
A
K
R
---------EMPD-V
G
V
K
V
-KTP--E-GA--
E
A
R
V
----
S
----
G
I
N
L
L
S
-
R
---
I
L
Q
VS----------LPEEE
T
V
I
E
--
Y
E
L
D
ELR
P
Y
------
N
-
E
F
-
L
KQPAKS-----------------
34
Fugue
85.37
21%
-18
- C6 -
3WL8
2
OPH_PSESP
A:
[23-358]
--------------V
K
W
E
C
P
A
G
Y
E
V
K
E
-
G
L
-
N
V
D
F
P
H
K
G
--------
M
K
-
R
A
F
I
V
Y
P
A
K
-
N
---------
V
S
G
P
A
P
V
W
V
P
M
T
G
--------------
S
V
E
-
S
----
T
------
N
-----
D
N
-
L
T
V
A
-
R
S
G
A
N
S
I
L
A
D
H
G
Y
T
V
I
A
P
V
R
A
C
ANQ
D
P
N
I
R
G
ERCNGPGSNGWNWNPWFEG
R
A
A
-
D
P
-
S
G
E
H
W
K
N
D
E
G
P
D
S
S
F
F
V
A
-
M
-----
V
Q
C
V
G
T
K
Y
K
-
L
D
A
R
R
L
F
L
G
G
I
A
S
G
G
T
M
T
N
R
--------
A
L
----------
L
F
R
-----
S
N
F
W
A
G
------------------
G
L
P
I
S
--
G
E
W
---
Y
V
T
-
S
---
D
D
G
T
P
L
-------------------------
S
----------
F
D
D
A
R
-
A
A
---
V
A
-
A
---------
A
P
T
K
I
H
Q
G
R
V
G
P
YPLPAKV
G
P
L
I
V
----
M
T
V
W
G
G
E
-
K
D
L
W
N
C
T
R
------------
P
D
--
G
S
R
F
-
L
C
A
--
D
-
Y
R
--
P
S
T
Q
----
A
----
G
S
N
F
F
S
-
A
QPD
V
V
H
V
A
C
S
S
THGHMWP
Q
L
N
T
Q
E
F
N
R
--
W
A
L
D
T
L
A
S
H
PKGSDP
R
-
S
F
K
L
T
Q
P
P
E
G
Y
T
C
H
V
G
PFTGLYASAWS
29
Fugue
84.43
19%
-54
- C3 -
4P0P
1
EME1_HUMAN
B:
[62-389]
------------------
R
M
K
A
Q
R
P
E
E
C
L
K
H
I
I
V
V
L
D
P
V
L
L
Q
----
M
E
G
-
G
G
Q
L
L
G
A
L
Q
-
T
---------
M
E
C
-
R
C
V
I
E
A
Q
A
V
PC
S
V
T
W
R
R
R
A
G
PSE
D
R
E
-
D
W
V
E
E
-------
P
-----
T
V
-
L
V
L
L
-
R
A
E
A
F
V
S
M
I
D
N
G
K
T
L
Q
G
F
V
T
D
I
---
T
A
K
T
A
G
-------------------
K
A
L
-
S
L
-
V
I
V
D
Q
E
K
C
F
-----------------
V
S
-----
R
-
V
D
A
E
E
A
L
V
---
D
L
Q
L
H
T
------------
E
----------
A
Q
A
Q
I
V
Q
S
W
K
E
L
A
D
------------------
F
T
C
A
F
--
T
K
A
---
V
A
E
-
A
P
F
K
K
L
R
D
E
T
-------------------------
T
---------
F
S
F
C
L
E
-
S
D
---
W
A
-----------
G
G
V
K
V
-
D
L
A
G
R
G
-----------
L
----
A
L
V
W
R
R
Q
-
I
Q
Q
L
N
R
V
S
L
---------
E
M
A
S
-
A
V
V
N
A
Y
P
S
P
--
Q
-
L
L
--
V
Q
A
Y
Q
Q
CF
S
----
D
K
E
R
Q
N
-
L
---
L
A
D
I
Q
----------
V
R
R
T
S
R
R
I
G
--
P
E
L
S
R
R
I
Y
L
------
Q
-
M
T
-
T
L
Q
P
H
L
S
L----------------
32
Fugue
70.48
14%
-53
* C9 *
4IVN
2
?
A:
[6-278]
NL
L
V
R
L
R
S
N
MEPFS
K
K
L
R
V
V
A
D
Y
I
L
E
N
A
H
D
-
V
Q
F
Q
T
I
T
D
L
A
R
----
N
T
Q
-----
T
S
E
A
T
-
V
---------
V
R
L
C
R
D
M
---
G
Y
K
--------------
G
Y
S
-
D
F
R
M
A
L
------
A
-----
V
D
-
L
S
Q
T
-
G
D
I
C
D
V
S
A
Q
S
A
V
D
S
L
Q
D
T
A
K
L
I
---
D
R
K
S
L
A
-------------------
R
I
V
-
E
R
-
V
H
Q
A
-------
E
F
I
G
C
I
----------
G
-----
V
-
G
A
S
S
I
V
G
R
---
Y
L
A
Y
R
L
I
-
R
--------
I
G
----------
K
K
A
I
M
F
E
D
T
H
L
A
A
M
------------------
S
A
S
R
S
SQ
G
D
L
---
W
F
A
-
V
S
S
S
G
S
T
K
E
V
I
H
-----------------------
A
---------
A
G
L
A
Y
K
-
R
D
I
P
V
V
S
-
L
---------
T
N
I
N
H
-
S
P
L
S
S
L
-----------
S
----
T
E
M
L
V
A
A
-
R
P
E
G
-----------------------
P
-
L
T
G
--
G
-
A
F
--
A
S
K
V
----
G
----
A
L
L
L
V
D
-
V
---
L
V
N
S
L
----------
L
E
S
Y
P
E
Y
K
D
--
S
V
Q
E
T
A
E
V
V
------
I
-
P
L
-
M
A
N
---------------------
28
Fugue
59.92
22%
-50
- C2 -
2XC8
-
?
A:
[1-121]
---------------------
G
I
E
I
V
N
R
K
A
-
V
W
Y
L
T
---
S
E
I
----
K
E
T
-
E
T
G
I
E
V
S
A
G
-
E
---------
L
H
K
G
D
E
E
V
F
P
--
V
--------------
E
E
V
-
S
F
D
L
T
P
------
D
DT
Y
P
V
E
Y
M
L
Y
L
H
M
N
V
Q
T
K
K
V
S
W
S
L
C
K
A
Y
L
D
G
E
G
Y
C
---
D
Y
Q
G
N
E
-------------------
R
L
I
M
Y
P
-
V
S
V
T
V
F
P
N
G
T
R
E
G
T
I
F
L
Y
-
E
-----
K
E
D
-----
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
57.31
11%
-43
- C5 -
3HUF
2
NBS1_SCHPO
A:
[1-320]
----------------
M
W
I
I
E
A
E
G
D
I
L
K
G
K
-
S
R
I
L
F
P
G
T
Y
I
V
GRNV
S
D
D
-
S
S
H
I
Q
V
I
S
K
-
S
---------
I
S
K
R
H
A
R
F
T
I
L
T
P
--------------
S
E
K
-
D
Y
F
T
G
G
------
P
-----
C
E
-
F
E
V
K
-
D
L
D
T
K
F
G
T
K
V
N
E
K
V
V
G
Q
N
G
D
S
Y
---
K
E
K
--
D
-------------------
L
K
I
-
Q
L
-
G
K
C
P
F
T
I
N
A
Y
W
R
S
M
C
I
Q
F
-
D
N----
P
E
M
-----
L
-
S
Q
W
A
S
N
L
N
---
L
L
G
I
P
T
G
L
R
DSDATT
H
F
V
M
----------
N
R
Q
A
G
S
S
I
T
V
G
T
M
Y
------------------
A
F
L
K
---
K
T
V
---
I
I
D
-
D
S
Y
L
Q
Y
L
S
T
V
-------------------------
K
ESVIEDASL
M
P
D
A
L
E
-
C
F
---
K
N
-
I
I
KNNDQFPS
S
P
E
D
C
-
I
N
S
L
E
G
-----------
F
----
S
C
A
M
L
N
T
-
S
S
E
S
H
H
L
L
E
---------
L
L
G
L
-
R
I
S
T
F
-
M
K
E
--
L
-
I
S
--
K
T
D
F
----
V
----
V
L
N
G
-
I
-
F
---
C
L
T
I
E
----------
Q
L
W
K
I
I
I
E
R
--
N
S
R
E
L
I
S
K
E
------
I
-
E
R
-
L
K
Y
A
--------------------
33
Fugue
53.04
7%
-24
- C9 -
3N0W
1
?
A:
[6-378]
---Q
V
T
L
G
V
L
T
D
MSSV
Y
A
D
S
A
G
K
G
S
V
A
A
V
Q
-
L
A
I
E
D
V
G
G
K
A
L
----
G
Q
P
-
V
K
L
V
S
A
D
Y
Q
M
K
---------
T
D
V
A
L
S
I
A
R
E
W
F
D
--------------
R
D
G
V
D
A
I
F
D
V
VN
S
G
T
A
L
-----
A
I
-
N
N
L
V
-
K
D
K
K
K
L
A
F
I
T
A
A
A
A
D
Q
I
G
G
T
E
C
---
N
G
Y
G
I
G
F
LY----------------
N
F
T
-
S
I
-
V
K
T
V
V
Q
A
Q
L
A
K
G
Y
K
T
W
F
L
M
L
P
DA
A
Y
G
D
L
M
----
N
-
A
A
I
R
R
E
L
T
---
A
G
G
G
Q
I
V
G
S
--------
V
R
F
P
FETQDF
S
S
Y
L
L
Q
A
K
A
S
G
A
Q
L
I
V
STSGG
A
A
N
I
N
I
M
K
Q
A
R
E
F
G
L
P
S
K
--
T
Q
K
---
V
G
G
M
I
D
I
L
T
D
V
K
S
A
GLRVMQG
Q
E
Y
A
T
SFYWNMD
D
R
T
R
A
F
A
---------
K
R
F
Y
A
K
M
G
K
M
--
P
T
-
N
---------
N
Q
A
G
G
-
Y
S
A
A
L
Q
-----------
Y
----
L
K
A
V
N
A
I
G
S
K
D
P
Q
K
V
F
A
---------
Y
L
K
T
-
I
K
F
D
D
-
A
V
T
--
R
-
H
G
--
T
L
R
P
----
G
----
G
R
L
V
R
D
M
Y
---
L
V
R
A
K
----------
K
P
E
D
Q
K
G
D
W
DY
Y
D
V
V
A
T
I
G
P
------
E
-
Q
A
-
F
G
P
L
S
E
S
RCAMDK-----------
22
HHSearch
52.05
27%
-72
- C10 -
3AF5
-
?
A:
[29-74]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
A
-
K
I
T
E
I
E
F
--
E
G
P
E
L
V
I
Y
V
-
K
-----
N
P
E
----------
G
E
L
I
K
---
D
L
A
K
V
L
K
K
R
--------
I
S
----------
V
R
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
50.39
17%
-0
- C10 -
1SV0
-
POK_DROME
A:
[66-108]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
V
R
E
-
F
D
---
L
P
K
L
---------
D
F
D
L
F
--
Q
M
N
G
K
-----------
R
----
L
C
L
L
T
R
A
------
D
F
G
H
---------
R
C
P
G
-
A
G
D
V
L
-
H
N
-------------------------------------------------------------------------------------------------------
17
HHSearch
49.78
16%
-46
- C10 -
3ENC
-
?
A:
[19-75]
-----------------------------------------------------------------------------------------------------------------------------------------------
V
A
K
V
V
Y
---
E
A
V
L
Y
E
-------------------
H
L
S
-
V
P
Y
R
R
S
E
I
D
F
K
L
E
G
K
K
I
I
L
D
I
-
K
-----
A
T
D
-----
S
-
S
A
L
R
G
T
V
N
---
S
Y
L
R
W
I
K
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
48.00
20%
-49
- C10 -
2YCB
-
?
A:
[21-65]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
-
Q
V
A
K
V
E
F
--
E
G
P
E
V
V
I
Y
T
-
K
-----
N
P
E
-----
I
I
T
E
N
G
N
L
I
R
---
D
I
A
K
D
I
R
K
R
--------
I
I
----------
I
R
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
47.76
8%
-16
- C7 -
3GS9
-
?
A:
[3-339]
---------------S
D
I
I
V
A
D
F
W
N
N
E
E
I
L
-
T
D
F
D
D
S
F
E
S
W
T
----
E
N
E
M
W
S
I
E
F
V
A
Q
T
-
C
YSFLDYE
S
S
V
Y
F
R
G
Q
E
F
V
V
K
Q
L
--------------
S
H
D
-
A
T
L
S
K
D
------
I
-----
R
A
-
P
H
I
Y
-
Y
T
C
Q
D
G
R
Q
D
D
A
I
T
G
S
F
T
L
E
Q
C
L
---
T
H
I
F
T
D
-------------------
N
------
R
G
F
S
W
E
I
I
D
P
S
N
I
L
E
V
Q
Q
-
E
-----
N
F
G
-----
N
-
N
N
Y
L
T
L
I
D
---
Q
L
L
D
D
Y
G
V
V
--------
V
I
----------
P
D
N
R
H
L
V
F
P
R
E
I
Y
G
------------------
A
K
T
E
N
--
F
I
R
YYN
T
D
E
-
A
S
F
D
I
D
T
L
S
L
-------------------------
T
---------
I
G
Y
G
V
D
-
S
N
---
G
N
-
N
---------
Y
F
S
P
I
-
T
Y
T
S
P
E
-----------
V
EW
G
I
R
W
Q
E
P
V
S
-
D
E
R
Y
T
V
A
G
N
MQRRLLELQ
D
Y
P
A
-
T
T
G
S
V
-
I
L
E
--
C
E
G
D
--
Y
V
L
F
----
I
YEPL
G
I
D
Y
D
V
-
Q
---
I
V
A
Y
Y
----------
P
F
T
I
A
P
E
I
T
--
L
S
-
N
N
S
I
V
S
------
I
M
A
Q
-
L
A
V
L
G
-------------------
5
HHSearch
45.06
14%
31
- C10 -
1X66
-
A:
[39-82]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
K
E
-
Y
S
---
L
M
E
I
---------
D
T
S
F
F
-
Q
N
M
D
G
K
-----------
E
----
L
C
K
M
N
K
E
------
D
F
L
R
---------
A
T
T
L
Y
N
T
E
V
L
-
L
--------------------------------------------------------------------------------------------------------
8
HHSearch
44.85
14%
16
- C10 -
2YTU
-
A:
[53-98]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
K
E
-
Y
S
---
L
M
E
I
---------
D
T
S
F
F
-
Q
N
M
D
G
K
-----------
E
----
L
C
K
M
N
K
E
------
D
F
L
R
---------
A
T
T
L
Y
N
T
E
V
L
-
L
S
H
------------------------------------------------------------------------------------------------------
9
HHSearch
44.75
17%
33
- C10 -
2QAR
-
?
B:
[28-69]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
N
E
-
F
S
---
L
S
P
I
---------
D
S
N
T
F
--
E
M
N
G
K
-----------
A
----
L
L
L
L
T
K
E
------
D
F
R
Y
---------
R
S
P
H
-
S
G
D
V
L
-
Y
E
-------------------------------------------------------------------------------------------------------
21
HHSearch
44.69
10%
14
- C8 -
3P8D
-
PHF20_HUMAN
A:
[87-137]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
Q
-
I
N
E
Q
V
-
L
A
C
W
S
D
-
C
R
F
Y
P
A
K
V
----
T
----
A
V
N
K
-
D
-
G
---
T
Y
T
V
K
----------
F
Y
D
G
V
V
-
Q
T
--
V
K
H
I
H
V
K
A
F
------
S
----------------------------
7
HHSearch
44.51
17%
-6
- C10 -
1SXE
-
ERG_HUMAN
A:
[146-189]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
V
K
E
-
Y
G
---
L
P
D
V
---------
N
I
L
L
F
-
Q
N
I
D
G
K
-----------
E
----
L
C
K
M
T
K
D
------
D
F
Q
R
---------
L
T
P
S
Y
N
A
D
I
L
-
L
--------------------------------------------------------------------------------------------------------
4
HHSearch
44.20
15%
21
- C10 -
1JI7
1
ETV6_HUMAN
A:
[27-68]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
N
E
-
F
S
---
L
R
P
I
---------
D
S
N
T
F
--
E
M
N
G
K
-----------
A
----
L
L
L
L
T
K
E
------
D
F
R
Y
---------
R
S
P
H
-
S
G
D
E
L
-
Y
--------------------------------------------------------------------------------------------------------
11
HHSearch
43.13
23%
14
- C10 -
1SV0
-
?
C:
[119-161]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
V
S
-
E
G
---
L
E
-
V
T
A
E
------
L
P
Q
K
F
--
P
M
N
G
K
-----------
A
----
L
C
L
M
S
L
D
------
M
Y
L
C
---------
R
V
P
V
-
G
G
K
M
L
----------------------------------------------------------------------------------------------------------
15
HHSearch
42.79
19%
21
- C10 -
2DKX
-
A:
[39-81]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
E
H
Q
-
Y
R
---
L
P
P
M
---------
G
K
A
F
--
Q
E
L
A
G
K
-----------
E
----
L
C
A
M
S
E
E
------
Q
F
R
Q
---------
R
S
P
L
-
G
G
D
V
L
-
H
A
-------------------------------------------------------------------------------------------------------
19
HHSearch
41.89
10%
1
- C8 -
2E5P
-
PHF1_HUMAN
A:
[10-62]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
W
-
E
G
Q
D
V
-
L
A
R
W
T
D
-
G
L
L
Y
L
G
T
I
----
K
----
K
V
D
S
A
R
-
E
---
V
C
L
V
Q
----------
F
E
D
D
S
-
Q
F
L
--
V
L
W
K
D
I
S
P
A
------
A
-
L
--------------------------