@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0169: (2016-03-12 )
MNIVIALIPAVMWGIMPLVVSKIGGKPRQQIIGTTFGALAFAIGVFIFTNPEYTATIIIASFVSGAFWSLGQMNQFRAFTQVGVSKTMPLSTGMQLVGTSLFGVFAFHEWGTTSKLVLGFSALALIIIGIFLTSYQQHKDENSGQNMKKGIITLLISSVGYVGYVVITRWFDISGWDAILPQAIGMVVAGLLFSIKSEEKRFTKQTWLNMIPGVMWATGNLALLFSNKLVGIATGFSLSQMGVVISTIGGILFLGEKKTKKELILVIIGVVLVIIGGTMIGIAKS
Atome Classification :
(20 SA)
------------------------------------------------------------.........10.-----.......20.......-.30-----------.....----...40........50......--..60.....-...70........80........90.........100----.........110.....-..120....--...130.......140..--.....150....--...160.....---------..170......--------------.180.......--190.......200.----------......210-----------.-......220.....----------------.----------.230...-----..-..240......-------.-250.......260......---.270-.......-280...----
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------M
N
I
V
I
A
L
I
P
A
V
M
-----
W
G
I
M
P
L
V
V
S
KIGGK
P
R
-
Q
Q
I
-----------
I
G
T
T
F
----
G
A
L
A
F
A
I
G
V
F
I
FTNPE
Y
T
A
T
I
--
I
I
A
S
F
V
S
G
A
-
F
WSLG
Q
M
N
Q
F
R
A
F
T
QVGVSKTMPL-ST
G
M
Q
L
V
G
T
S
------
L
F
G
V
F
A
F
HEWGTT
S
K
L
V
-
L
G
F
S
A
L
A
L
I
--
I
I
G
I
F
L
T
S
Y
Q
Q
HKDENSG--
Q
N
M
K
K
G
I
I
T
L
L
I
--
S
SVG
Y
V
G
Y
V
V
I
---------
T
R
W
FDIS
G
W
D
A
--------------
I
L
P
Q
A
I
G
M
V
V
A
--
G
L
L
F
S
IK
S
E
E
K
R
F
T
----------
K
Q
T
W
L
N
MIP-----------G-
V
M
WATG
N
L
A
L
L
FSN----------------
K
----------
L
V
G
I
ATG-----F
S
-
L
S
Q
M
G
V
V
I
S
TI-------G-
G
I
L
F
LGEKKT
K
K
E
L
I
L
V
I
I
---
G
V
V
L
-
V
I
IGG
T
M
-
I
G
IAKS----
26
Fugue
88.28
22%
-128
* C4 *
4R5O
10
?
A:
[2-427]
DDCEDLHLGNLAH
Y
P
N
V
L
K
GTFPT
E
S
Q
V
L
E
LG
E
T
L
E
I
T
P
E
L
LNPEG
A
T
Y
S
W
L
V
NGKEYST
E
P
T
F
S
Y
K
I
D
N
P
C
-----
R
A
D
L
S
C
I
I
K
N
K
Y
G
K
V
E
M
S
T
S
-----------
F
S
S
N
H
NFSK
G
F
F
Y
V
A
D
G
T
F
N
F
Y
D
T
E
K
K
T
A
Y
Q
D
C
Y
A
S
L
N
A
G
K
-
T
L
G
I
G
N
Y
D
S
A
N
I
I
H
S
N
G
---------
K
F
Y
L
L
V
G
T
S
TSNRDH
F
Y
I
V
D
A
K
T
L
Y
Y
E
N
S
A
V
V
G
A
N
L
S
G
L
T
I
L
NE
Q
Y
G
L
V
T
G
D
G
I
R
R
I
D
L
K
S
L
--
N
N
V
R
I
K
N
E
R
L
L
C
FY
N
S
I
I
Y
N
G
K
V
L
S
N
DTYKDES
K
V
K
Y
Y
D
V
N
E
L
I
A
AKEGEA
P
A
V
T
E
L
DI
I
Q
K
Q
K
I
N
F
V
L
A
KD
G
N
V
Y
T
L
E
S
A
D
N
G
C
N
I
V
K
I
K
NDF
T
L
E
K
V
F
A
N
F
Q
P
AKGPYHSSPTI
G
M
V
A
S
E
T
E
N
I
I
Y
L
V
S
T
----------------
D
G
A
I
Y
K
Y
I
LGD
S
D
S
L
K
A
P
-----
F
I
-
A
A
E
S
G
V
S
I
T
A
P
L
Q
L
NQQS
G
-
E
L
Y
V
T
Y
T
E
E
R
K
D
E
S
K
I
V
V
Y
S
KD
G
K
V
L
-
H
T
V
D
C
G
E
-
S
V
P
S
Q
I
L
F
NN
27
Fugue
72.65
10%
-113
- C4 -
2AVW
1
?
A:
[20-309]
-----------------------------------------------------------V
T
S
V
W
T
K
G
V
T
P
P
A
-----
N
F
T
Q
G
E
D
V
F
H
A
P
Y
V
A
N
-
Q
G
W
YDITKTFNGKD
D
L
L
A
G
----
A
A
T
A
G
N
M
L
H
W
W
F
D
Q
N
K
D
Q
I
K
R
--
Y
L
E
E
H
P
E
K
Q
-
K
I
N
F
N
G
E
Q
M
F
D
V
K
E
A
I
D
T
K
N
H
Q
L
D
-
S
K
L
F
E
Y
F
K
E
K
-----------
A
F
P
Y
L
S
T
K
H
L
G
V
-
F
P
D
H
V
I
D
M
F
--
I
N
G
Y
R
L
S
L
T
N
H
G
P
T
P
V
K
E
G
S
K
D
P
R
G
G
I
F
D
A
V
F
--
T
R
-
G
D
Q
S
K
L
L
T
---------
S
R
H
D
F
K
E
K
N
L
K
--------------
E
I
S
D
L
I
K
K
E
L
T
E
-
G
K
A
L
G
L
S
H
T
Y
A
N
V
R
----------
I
N
H
V
I
N
L
W
G
-----------
A
-
D
F
D
S
N
G
N
L
K
A
I
Y
V
T
----------------
D
-----------
S
D
S
N
A
S
-----
I
G
-
M
K
K
Y
F
V
G
V
N
S
A
-------
G
-
K
V
A
I
S
A
K
E
I
K
E
D
N
I
G
A
Q
V
L
---
G
L
F
T
-
L
S
T
G
Q
D
S
-
W
N
Q
-------
31
Fugue
69.97
11%
-104
* C6 *
1H74
2
KHSE_METJA
A:
[1-296]
------------------------------------------------------------
M
K
V
R
V
K
A
P
C
T
S
A
NLGVG
F
D
V
F
G
L
C
L
K
E
P
Y
D
V
I
E
-
V
E
A
-----------
I
D
D
K
------------
E
I
I
I
E
V
D
D
K
N
I
P
T
D
--
P
D
K
N
V
A
G
I
V
-
A
K
K
M
I
D
D
F
N
I
G
K
G
V
K
I
T
I
K
K
G
V
K
A
-
G
S
G
--
L
G
S
S
A
------
A
S
S
A
G
T
A
Y
A
I
N
E
L
F
K
L
N
-
L
D
K
L
K
L
V
D
Y
--
A
S
Y
G
E
L
A
S
S
G
A
K
H
A
D
N
V
A
--
P
A
I
F
G
G
F
T
M
V
T
N
--
Y
E
P
L
E
V
L
H
I
P
I
---------
D
F
K
L
D
I
L
I
A
I
P
--------------
N
I
S
I
N
T
K
E
A
R
E
--
I
L
P
K
A
V
G
L
K
D
L
V
N
N
----------
V
G
K
A
C
G
M
V
Y
-----------
A
-
L
Y
--
N
K
D
K
S
L
F
G
R
Y
M
M
SDKVI
E
P
V
R
G
K
L
IP
N
----------
Y
F
K
I
K
E
E
-----
V
K
-
D
K
V
Y
G
I
T
I
S
G
S
-------
G
P
S
I
I
A
F
P
K
E
E
F
I
D
E
V
E
N
I
L
R
---
D
Y
Y
E
N
T
I
R
T
E
V
G
-
K
G
V
E
V
V
----
32
Fugue
69.04
11%
-103
- C6 -
1FWK
1
KHSE_METJA
A:
[1-296]
------------------------------------------------------------
M
K
V
R
V
K
A
P
C
T
S
A
NLGVG
F
D
V
F
G
L
C
L
K
E
P
Y
D
V
I
E
-
V
E
A
-----------
I
D
D
K
------------
E
I
I
I
E
V
D
D
K
N
I
P
T
D
--
P
D
K
N
V
A
G
I
V
-
A
K
K
M
I
D
D
F
N
I
G
K
G
V
K
I
T
I
K
K
G
V
K
A
-
G
S
G
--
L
G
S
S
A
------
A
S
S
A
G
T
A
Y
A
I
N
E
L
F
K
L
N
-
L
D
K
L
K
L
V
D
Y
--
A
S
Y
G
E
L
A
S
S
G
A
K
H
A
D
N
V
A
--
P
A
I
F
G
G
F
T
M
V
T
N
--
Y
E
P
L
E
V
L
H
I
P
I
---------
D
F
K
L
D
I
L
I
A
I
P
--------------
N
I
S
I
N
T
K
E
A
R
E
--
I
L
P
K
A
V
G
L
K
D
L
V
N
N
----------
V
G
K
A
C
G
M
V
Y
-----------
A
-
L
Y
--
N
K
D
K
S
L
F
G
R
Y
M
M
SDKVI
E
P
V
R
G
K
L
IP
N
----------
Y
F
K
I
K
E
E
-----
V
K
-
D
K
V
Y
G
I
T
I
S
G
S
-------
G
P
S
I
I
A
F
P
K
E
E
F
I
D
E
V
E
N
I
L
R
---
D
Y
Y
E
-
N
T
I
R
T
E
V
G
K
G
V
E
V
V
----
33
Fugue
60.67
11%
-103
- C3 -
1A8R
1
GCH1_ECOLI
A:
[1-221]
--------------------------------------------------------PSLS
K
E
A
A
L
V
H
E
A
L
V
A
-----
R
G
L
E
T
P
L
R
P
P
V
H
E
M
D
N
-
E
T
R
-----------
K
S
L
I
A
----
G
H
M
T
E
I
M
Q
L
L
N
L
D
L
A
D
D
S
L
M
E
--
T
P
H
R
I
A
K
M
Y
-
V
D
E
I
F
S
G
L
D
Y
A
N
F
P
K
I
T
L
I
E
N
K
M
K
-
V
D
E
M
-------------------------------------
V
T
--
V
R
D
I
T
L
T
S
T
C
E
S
H
---------------
F
V
T
I
--
D
G
K
A
T
V
A
Y
I
P
K
---------
D
S
V
I
G
L
S
K
I
N
R
--------------
I
V
Q
F
F
A
-----------
Q
R
P
Q
V
Q
E
R
L
T
----------
Q
Q
I
-
L
I
A
L
Q
-----------
T
-
L
L
G
T
N
N
V
A
V
S
I
D
A
V
----------------
H
----------
Y
C
V
K
A
R
G
-----
I
R
-
D
A
T
S
A
T
T
T
T
S
L
-------
G
-
G
-
L
F
K
S
S
Q
N
T
R
H
E
F
L
R
A
V
R
-------------------
H
H
N
----
13
PsiBlast_PDB
45.10
24%
-45
- C2 -
4AKM
1
LAMP3_HUMAN
A:
[22-96]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
I
Q
L
I
V
Q
D
K
E
S
V
F
S
----------
P
R
R
Y
F
N
I
D
P
-----------
N
-
A
T
Q
A
S
G
N
C
G
T
R
K
S
N
----------------
L
----------
L
L
N
F
Q
G
G
F
V
N
L
T
F
T
-
K
D
E
E
S
Y
Y
I
S
E
V
-------
G
-
A
Y
L
T
V
S
D
P
E
T
-----------------------------------
11
PsiBlast_PDB
42.47
30%
-37
- C5 -
2DKV
1
CHI2_ORYSJ
A:
[155-221]
--------------------------------------------------------------------
P
S
P
E
-----
W
P
C
A
P
-
G
R
K
Y
Y
G
R
G
P
I
-
Q
L
S
-----------
F
N
F
N
Y
----
G
P
A
G
R
A
I
G
V
D
L
L
S
N
P
D
L
V
A
T
D
--
A
T
V
S
F
K
T
A
L
W
F
W
M
T
P
Q
G
N
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
40.32
30%
-35
- C5 -
3IWR
1
CHI2_ORYSJ
A:
[155-221]
--------------------------------------------------------------------
P
S
P
E
-----
W
P
C
A
P
-
G
R
K
Y
Y
G
R
G
P
I
-
Q
L
S
-----------
F
N
F
N
Y
----
G
P
A
G
R
A
I
G
V
D
L
L
S
N
P
D
L
V
A
T
D
--
A
T
V
S
F
K
T
A
L
W
F
W
M
T
P
Q
G
N
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
38.38
16%
-76
- C- -
3B5D
1
EMRE_ECOLI
A:
[37-105]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
-
I
C
Y
C
A
S
F
W
L
L
A
Q
T
L
----------------
A
----------
Y
I
P
T
G
I
A
-----
Y
A
I
W
S
G
V
G
I
V
L
I
S
L
-------
L
-
S
W
G
F
F
G
Q
R
L
D
L
P
A
I
----
I
---
G
M
M
L
-
I
C
A
G
V
L
I
-
I
N
L
L
S
-----
17
HHSearch
33.67
11%
-115
- C- -
3B5D
1
EMRE_ECOLI
A:
[28-105]
----------------------------------------------------------------------------------------------------------------------------------------
T
R
--
L
W
P
S
V
G
T
I
I
-
C
Y
C
A
S
F
W
L
L
A
Q
T
L
A
Y
I
P
T
G
I
A
Y
A
I
W
S
G
V
G
I
V
L
-
I
S
------
L
L
S
W
G
F
F
G
Q
R
L
D
L
P
-----
A
I
I
G
M
M
L
I
--
C
A
G
V
L
I
I
N
L
L
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
33.43
34%
66
- C5 -
1DHY
-
BPHC_PSES1
A:
[2-42]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
--
E
R
L
G
Y
L
G
F
A
V
K
-------------
D
V
P
A
W
D
H
--------------
F
L
T
K
S
V
G
L
M
A
A
--
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
33.02
34%
48
- C5 -
1KW9
-
BPHC_PSES1
B:
[2-32]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
--
E
R
L
G
Y
L
G
F
A
V
K
-------------
D
V
P
A
W
D
H
--------------
F
L
T
K
S
V
G
L
M
A
A
--
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
32.53
34%
55
- C5 -
1EIQ
-
BPHC_PSES1
A:
[2-32]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
--
E
R
L
G
Y
L
G
F
A
V
K
-------------
D
V
P
A
W
D
H
--------------
F
L
T
K
S
V
G
L
M
A
A
--
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
32.17
34%
46
- C5 -
1EIL
1
BPHC_PSES1
A:
[2-32]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
--
E
R
L
G
Y
L
G
F
A
V
K
-------------
D
V
P
A
W
D
H
--------------
F
L
T
K
S
V
G
L
M
A
A
--
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
32.03
34%
53
- C5 -
1EIR
-
BPHC_PSES1
A:
[2-32]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
--
E
R
L
G
Y
L
G
F
A
V
K
-------------
D
V
P
A
W
D
H
--------------
F
L
T
K
S
V
G
L
M
A
A
--
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
31.87
34%
51
- C5 -
1KW6
-
BPHC_PSES1
B:
[2-32]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
--
E
R
L
G
Y
L
G
F
A
V
K
-------------
D
V
P
A
W
D
H
--------------
F
L
T
K
S
V
G
L
M
A
A
--
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
31.66
34%
52
- C5 -
1KW3
-
BPHC_PSES1
B:
[2-32]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
--
E
R
L
G
Y
L
G
F
A
V
K
-------------
D
V
P
A
W
D
H
--------------
F
L
T
K
S
V
G
L
M
A
A
--
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
31.51
34%
58
- C5 -
1KWC
-
BPHC_PSES1
B:
[2-32]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
--
E
R
L
G
Y
L
G
F
A
V
K
-------------
D
V
P
A
W
D
H
--------------
F
L
T
K
S
V
G
L
M
A
A
--
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
31.14
34%
51
- C5 -
1KWB
-
BPHC_PSES1
B:
[2-32]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
--
E
R
L
G
Y
L
G
F
A
V
K
-------------
D
V
P
A
W
D
H
--------------
F
L
T
K
S
V
G
L
M
A
A
--
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
30.57
34%
43
- C5 -
1KW8
-
BPHC_PSES1
B:
[2-32]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
--
E
R
L
G
Y
L
G
F
A
V
K
-------------
D
V
P
A
W
D
H
--------------
F
L
T
K
S
V
G
L
M
A
A
--
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------