@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0193: (2016-03-13 )
MKKWVKWLIVIVIIAVVAVGAVFLLSKNSGSVTQEKLVTAKVKQGDMKINATGTGAISPVNTQVPDYDELQLVAQMDELDIPNIKKDQEVKVTVTALPDKTYTGKVKEIAEQGQVQNGVSSFSVIISLDKTDDLKAGMTADASILVNEKKDALYVPIEAVQKDSDDKYYVLVPEEKDNGKTKKVKKFVETGLHNEDNIEITKGVKKGEKVILPTQETSTVPGAPS
Atome Classification :
(20 SA)
-------------------.....--....10.......-.20........30..-----......40..---....---------------..50-.......---.60..---.--.---..---.-------------..70.....----------...80..----------------...----..---------.--90.-------.......-100-------------...---..--------..---------110--.--.-.-.....120....-.-..130.....-----------.----.140.......150......----.160..--------.....170........180...-....190.......200.......210-----------.--.......220...--
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------M
K
K
W
V
--
K
W
L
I
V
I
V
I
I
A
V
V
A
-
V
G
A
V
F
L
L
SKNSGSV
T
-----
Q
E
K
L
V
T
A
K
VK---QG
D
M
---------------
K
I
NA-TGTGAIS---PV-NT---Q--V---P
D
---
Y
-------------
D
E
L
Q
L
V
A
Q
M
----------
D
ELDIPN----------------IKK----D
Q
---------
E
--
V
K
V
-------
T
V
T
ALPD-KTY-------------T
G
K
---
V
K
--------
E
I
---------
A
E
---
Q
--
G
-
Q
-
V
QNGVS
S
F
S
V
I
I
-
S
-LDKTDDLKAG-----------M----TA
D
A
S
I
L
V
NEKK
D
A
L
Y
V
P
I
E
----
A
VQKDS--------DD
K
Y
Y
V
-
L
V
PEEKDNG
K
T
K
K
V
K
-
K
F
V
E
TGLHNEDN
I
E
I
TKGVKKG
E
K
V
I
------------
L
--PTQETSTVPGAPS--
43
Fugue
86.84
17%
-43
- C6 -
4KKU
-
?
A:
[23-296]
Y
R
F
P
V
I
A
M
K
V
K
K
G
I
L
S
D
Y
L
S
L
N
G
D
--
V
D
T
K
V
K
A
D
I
F
P
D
A
-
V
G
K
I
T
S
L
R
I
K
L
G
A
-
Y
-----
V
Q
K
G
Q
I
V
A
T
L
---
D
P
K
S
---------------
P
V
R
A
-
P
I
S
G
Y
I
L
---
N
I
-
T
K
---
K
--
I
---
G
E
---
T
V
N
PQSNI
A
V
V
G
R
I
D
T
K
Q
I
L
T
Y
V
----------
S
E
K
Y
I
S
N
----------------
I
K
V
----
G
N
---------
D
--
A
I
I
-------
E
V
G
A
Y
S
N
-
E
K
F
-------------
K
A
K
---
V
S
--------
E
I
---------
S
P
---
I
--
L
-
D
-
S
K
S
R
T
I
E
V
Y
L
T
P
-
I
--
G
S
N
L
D
K
L
I
I
-----------
G
M
---
F
S
K
I
K
L
I
T
K
R
F
K
D
V
I
K
I
S
R
E
----
A
V
V
E
R
E
--------
G
K
K
F
V
F
-
K
V
D
L
E
S
-----
K
S
V
Q
M
L
P
I
T
V
L
F
E
I
D
N
I
V
A
L
S
G
E
V
E
E
N
D
L
I
V
VEGMSALSNG
S
L
I
--
N
L
V
D
T
K
E
G
L
S
A
E
S
NI
23
HHSearch
76.44
18%
-52
- C6 -
3LNN
1
?
A:
[178-350]
-------------------------------------------------------------------------
N
G
R
V
---------------
V
D
L
N
-
A
A
T
G
A
Y
W
---
N
D
T
T
A
---
S
--
L
---
M
T
V
A
D
L
-------------
S
H
V
F
V
T
A
N
A
----------
Q
E
K
D
L
G
H
----------------
V
Y
V
----
G
Q
---------
S
--
A
T
V
-------
K
F
D
A
Y
D
--
D
P
Q
-------------
P
G
K
---
V
R
--------
Y
V
---------
G
Q
---
I
--
L
-
D
-
A
D
T
R
--
T
T
K
V
R
M
-
V
F
D
N
P
D
G
R
L
R
P
G
-----------
M
----
F
A
Q
A
T
F
L
S
Q
P
-
H
E
G
I
V
V
P
M
S
----
A
I
V
Q
S
---------
G
F
Y
T
R
A
-
F
V
----
E
V
A
P
W
Q
F
E
P
-
R
V
I
K
L
G
A
Q
I
G
D
R
M
E
V
K
S
G
L
S
A
G
D
R
V
V
------------
V
--
K
E
G
V
L
L
N
D
-------
21
HHSearch
75.64
19%
-46
- C6 -
3NE5
-
CUSB_ECOLI
B:
[215-392]
-------------------------------------------------------------------------
D
G
V
I
---------------
T
A
F
D
-
L
R
A
G
M
N
I
---
A
K
-
D
N
---
V
--
V
---
A
K
IQG
M
-------------
D
P
V
W
V
T
A
A
I
----------
P
E
S
I
A
W
L
----------------
V
K
D
----
A
S
---------
Q
--
F
T
L
-------
T
V
P
A
R
P
D
-
K
T
L
-------------
T
I
R
---
K
W
--------
T
L
---------
L
P
---
G
--
V
-
D
-
A
A
T
R
T
--
L
Q
L
R
L
E
V
-
D
N
A
D
E
A
L
K
P
G
-----------
M
----
N
A
W
L
Q
L
N
T
A
S
-
E
P
M
L
L
I
P
S
Q
----
A
L
I
D
T
---------
G
S
E
Q
R
V
-
I
T
----
V
D
A
D
G
R
F
V
P
-
K
R
V
A
V
F
Q
A
S
Q
G
V
T
A
L
R
S
G
L
A
E
G
E
K
V
V
------------
S
--
S
G
L
F
L
I
D
S
E
A
N
I
S
--
24
HHSearch
65.93
21%
-43
- C6 -
3FPP
-
MACA_ECOLI
A:
[191-308]
-------------------------------------------------------------------------
A
G
E
V
---------------
T
Q
I
T
-
T
L
Q
G
Q
T
V
---
I
A
-
A
Q
Q
A
P
N
--
I
---
L
T
L
A
D
M
-------------
S
A
M
L
V
K
A
Q
V
----------
S
E
A
D
V
I
H
----------------
L
K
P
----
G
Q
---------
K
--
A
W
F
-------
T
V
L
G
D
Q
L
-
T
R
Y
-------------
E
G
Q
---
I
K
--------
D
V
---------
L
P
---
T
--
P
-
E
-
K
V
N
D
A
I
F
Y
Y
A
R
F
-
E
V
P
N
P
N
G
L
L
R
L
D
-----------
M
----
T
A
Q
V
H
I
Q
L
T
D
V
K
N
V
L
T
-----------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
63.09
24%
-39
- C6 -
3FPP
-
MACA_ECOLI
A:
[217-308]
----------------------------------------------------------------------------------------------------------------------
L
---
A
D
---
M
-------------
S
A
M
L
V
K
A
Q
V
----------
S
E
A
D
V
I
H
----------------
L
K
P
----
G
Q
---------
K
--
A
W
F
-------
T
V
L
G
D
Q
L
-
T
R
Y
-------------
E
G
Q
---
I
K
--------
D
V
---------
L
P
---
T
--
P
-
E
K
V
N
D
A
I
F
Y
Y
A
R
F
E
-
V
-
P
N
P
N
G
L
L
R
L
D
-----------
M
----
T
A
Q
V
H
I
Q
L
T
D
V
K
N
V
L
T
-----------------------------------------------------------------------------------------------------
46
Fugue
63.08
25%
-2
- C1 -
3P4G
16
?
A:
[23-323]
-----------------HS
F
D
H
Y
I
G
S
A
F
D
A
S
N
N
N
V
A
V
T
G
N
V
S
A
T
L
N
V
L
A
G
D
D
K
V
S
I
DGNV
E
D
V
L
V
A
A
N
V
A
---
V
L
D
M
GTGN
D
Q
L
Y
V
A
G
D
V
L
G
K
I
D
A
G
T
G
N
D
E
I
Y
I
K
G
D
V
-
S
A
---
A
--
V
D
AG
T
G
---
N
-------------
D
E
V
Y
I
G
G
N
L
SGDLDAGT
D
N
D
N
I
Q
I
G
G
DVNAALNAGTGN
D
N
L
I
I
G
H
----
D
V
---------
S
--
G
I
V
N
MGT
D
N
D
T
V
E
V
G
R
T
-
I
N
A
-------------
S
G
K
---
V
L
LDTGD
D
S
L
L
V
---------
S
G
---
D
L
F
G
-
E
-
V
D
G
G
T
G
N
D
T
I
I
I
-
A
-
G
K
V
S
G
N
I
Q
G
G
TGN
D
I
V
R
V
QSQ
V
----
W
A
E
A
N
I
S
L
G
T
G
D
D
V
L
I
V
E
H
E
LH
G
T
V
A
G
N
E
G
--------
D
D
S
I
Y
L
-
K
F
Y
T
K
E
Q
Y
N
N
N
S
D
L
R
-
N
R
V
A
----
N
F
E
H
I
R
V
S
D
G
V
V
K
G
S
P
A
D
------------
F
--
A
D
Y
------------
16
PsiBlast_PDB
54.91
24%
7
- C5 -
1H2V
-
?
C:
[152-292]
-------------------------------------------------------------------------------------------------------------------------------------------------
F
V
S
V
T
----------
Q
E
E
D
V
P
Q
----------------
V
R
R
----
D
W
---------
Y
--
V
Y
A
-------
F
L
S
S
L
P
----
W
-------------
V
G
K
ELY
E
K
--------
K
D
---------
A
E
---
M
--
D
-
R
-
I
F
A
N
T
E
S
Y
-------
L
K
R
R
Q
K
T
H
V
P
-----------
M
LQVW
T
A
D
K
P
H
P
Q
E
E
Y
L
D
C
L
W
A
Q
I
Q
----
K
L
K
K
D
R
--------
W
Q
E
R
H
I
-
L
R
P
---------------------------------------------------------------------
22
HHSearch
53.27
17%
-20
- C6 -
1VF7
-
MEXA_PSEAE
A:
[123-262]
-------------------------------------------------
A
A
V
E
Q
A
-----
R
I
N
L
R
Y
T
K
V
L
SP
I
S
G
R
I
---------------
G
R
S
A
-
V
T
E
G
A
L
V
---
T
N
-
G
Q
---
A
NA
M
---
A
T
V
Q
Q
L
-------------
D
P
I
Y
V
D
V
T
Q
----------
P
S
T
A
L
L
R
----------------
L
R
R
E
L
A
S
G
Q
LERAGDN
A
A
K
--
V
S
L
-------
K
L
E
D
G
S
Q
-
Y
P
L
-------------
E
G
R
---
L
E
--------
F
S
---------
E
V
---
S
--
V
-
D
-
E
G
T
G
--
S
V
T
I
R
A
-
V
F
P
N
P
N
N
E
L
L
P
G
-----------
M
----
F
V
H
A
Q
L
Q
E
G
------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
52.91
24%
9
- C5 -
1N52
1
?
A:
[152-285]
-------------------------------------------------------------------------------------------------------------------------------------------------
F
V
S
V
T
----------
Q
E
E
D
V
P
Q
----------------
V
R
R
----
D
W
---------
Y
--
V
Y
A
-------
F
L
S
S
L
P
----
W
-------------
V
G
K
E
L
Y
E
K
--------
K
D
---------
A
E
---
M
--
D
-
R
-
I
F
A
N
T
E
S
Y
-------
L
K
R
R
Q
K
T
H
V
P
-----------
M
LQVW
T
A
D
K
P
H
P
Q
E
E
Y
L
D
C
L
W
A
Q
I
Q
----
K
L
K
K
D
R
--------
W
Q
E
R
H
I
-
L
R
P
---------------------------------------------------------------------
20
PsiBlast_PDB
52.14
30%
-10
- C5 -
1D1P
1
PPAL_YEAST
A:
[65-153]
--------------------------------------------------------------------
C
K
---
Q
H
G
V
---------------
K
I
N
H
-
K
G
K
----------
Q
I
---
K
--
T
---
K
H
---
F
-------------
D
E
Y
D
Y
I
I
G
M
----------
D
E
S
N
I
N
N
----------------
L
K
K
----
I
Q
---------
P
EG
S
K
A
-------
K
V
C
L
F
G
D
W
N
T
N
-------------
D
G
T
---
V
Q
--------
T
I
---------
I
E
DPW
Y
--
G
-
D
-
I
Q
D
F
E
Y
N
F
K
Q
I
T
-
Y
-
F
S
K
--------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
51.77
24%
9
- C5 -
1H2U
-
?
A:
[133-244]
-------------------------------------------------------------------------------------------------------------------------------------------------
F
V
S
V
T
----------
Q
E
E
D
V
P
Q
----------------
V
R
R
----
D
W
---------
Y
--
V
Y
A
-------
F
L
S
S
L
P
----
W
-------------
V
G
K
E
L
Y
E
K
--------
K
D
---------
A
E
---
M
--
D
-
R
-
I
F
A
N
T
E
S
Y
-------
L
K
R
R
Q
K
T
H
V
P
-----------
M
LQVW
T
A
D
K
P
H
P
Q
E
E
Y
L
D
C
L
W
A
Q
I
Q
----
K
L
K
K
D
R
--------
W
Q
E
R
H
I
-
L
R
P
---------------------------------------------------------------------
15
PsiBlast_PDB
51.65
24%
7
- C5 -
3FEY
-
NCBP1_HUMAN
A:
[152-280]
-------------------------------------------------------------------------------------------------------------------------------------------------
F
V
S
V
T
----------
Q
E
E
D
V
P
Q
----------------
V
R
R
----
D
W
---------
Y
--
V
Y
A
-------
F
L
S
S
L
P
----
W
-------------
V
G
K
E
L
Y
E
K
--------
K
D
---------
A
E
---
M
--
D
-
R
-
I
F
A
N
T
E
S
Y
-------
L
K
R
R
Q
K
T
H
V
P
-----------
M
LQVW
T
A
D
K
P
H
P
Q
E
E
Y
L
D
C
L
W
A
Q
I
Q
----
K
L
K
K
D
R
--------
W
Q
E
R
H
I
-
L
R
P
---------------------------------------------------------------------
3
PsiBlast_PDB
51.34
25%
60
- C6 -
4DK1
-
MEXA_PSEAE
A:
[179-332]
-------------------------------------------------------------------------------------------------------
T
---
P
T
-
I
I
---
K
--
V
---
A
D
---
L
-------------
S
K
M
R
I
K
P
E
I
----------
S
E
G
D
I
T
K
----------------
V
K
A
----
G
Q
---------
D
--
V
T
F
-------
T
I
L
S
D
N
K
-
T
V
Y
-------------
H
A
K
---
I
D
--------
S
V
DPATTTISD--------------
S
A
V
Y
Y
Y
A
N
I
I
-
V
-
E
N
P
E
H
V
L
R
I
G
-----------
M
----
T
T
E
N
N
I
K
I
A
D
V
Q
N
V
L
F
I
P
N
L
----
A
V
Q
-------------------------------------
E
I
G
V
Q
N
D
F
Q
T
E
V
K
S
G
L
T
E
G
E
K
V
V
------------
I
S----------------
17
PsiBlast_PDB
50.93
24%
7
- C5 -
1H6K
-
?
A:
[152-288]
-------------------------------------------------------------------------------------------------------------------------------------------------
F
V
S
V
T
----------
Q
E
E
D
V
P
Q
----------------
V
R
R
----
D
W
---------
Y
--
V
Y
A
-------
F
L
S
S
L
P
----
W
-------------
V
G
K
E
L
Y
E
K
--------
K
D
---------
A
E
---
M
--
D
-
R
-
I
F
A
N
T
E
S
Y
-------
L
K
R
R
Q
K
T
H
V
P
-----------
M
LQVW
T
A
D
K
P
H
P
Q
E
E
Y
L
D
C
L
W
A
Q
I
Q
----
K
L
K
K
D
R
--------
W
Q
E
R
H
I
-
L
R
P
---------------------------------------------------------------------
10
PsiBlast_PDB
50.78
24%
10
- C5 -
1H2T
-
NCBP1_HUMAN
C:
[133-243]
-------------------------------------------------------------------------------------------------------------------------------------------------
F
V
S
V
T
----------
Q
E
E
D
V
P
Q
----------------
V
R
R
----
D
W
---------
Y
--
V
Y
A
-------
F
L
S
S
L
P
----
W
-------------
V
G
K
ELY
E
K
--------
K
D
---------
A
E
---
M
--
D
-
R
-
I
F
A
N
T
E
S
Y
-------
L
K
R
R
Q
K
T
H
V
P
-----------
M
LQVW
T
A
D
K
P
H
P
Q
E
E
Y
L
D
C
L
W
A
Q
I
Q
----
K
L
K
K
D
R
--------
W
Q
E
R
H
I
-
L
R
P
---------------------------------------------------------------------
13
PsiBlast_PDB
50.72
24%
12
- C5 -
1N54
-
NCBP1_HUMAN
A:
[152-286]
-------------------------------------------------------------------------------------------------------------------------------------------------
F
V
S
V
T
----------
Q
E
E
D
V
P
Q
----------------
V
R
R
----
D
W
---------
Y
--
V
Y
A
-------
F
L
S
S
L
P
----
W
-------------
V
G
K
ELY
E
K
--------
K
D
---------
A
E
---
M
--
D
-
R
-
I
F
A
N
T
E
S
Y
-------
L
K
R
R
Q
K
T
H
V
P
-----------
M
LQVW
T
A
D
K
P
H
P
Q
E
E
Y
L
D
C
L
W
A
Q
I
Q
----
K
L
K
K
D
R
--------
W
Q
E
R
H
I
-
L
R
P
---------------------------------------------------------------------
14
PsiBlast_PDB
50.71
24%
10
- C5 -
3FEX
-
NCBP1_HUMAN
A:
[152-280]
-------------------------------------------------------------------------------------------------------------------------------------------------
F
V
S
V
T
----------
Q
E
--
V
P
Q
----------------
V
R
R
----
D
W
---------
Y
--
V
Y
A
-------
F
L
S
S
L
P
----
W
-------------
V
G
K
E
L
Y
E
K
--------
K
D
---------
A
E
---
M
--
D
-
R
-
I
F
A
N
T
E
S
Y
-------
L
K
R
R
Q
K
T
H
V
P
-----------
M
LQVW
T
A
D
K
P
H
P
Q
E
E
Y
L
D
C
L
W
A
Q
I
Q
----
K
L
K
K
D
R
--------
W
Q
E
R
H
I
-
L
R
P
---------------------------------------------------------------------
18
PsiBlast_PDB
49.30
30%
-7
- C5 -
1D2A
1
PPAL_YEAST
A:
[65-153]
--------------------------------------------------------------------
C
K
---
Q
H
G
V
---------------
K
I
N
H
-
K
G
K
----------
Q
I
---
K
--
T
---
K
H
---
F
-------------
D
E
Y
D
Y
I
I
G
M
----------
D
E
S
N
I
N
N
----------------
L
K
K
----
I
Q
---------
P
EG
S
K
A
-------
K
V
C
L
F
G
D
W
N
T
N
-------------
D
G
T
---
V
Q
--------
T
I
---------
I
E
DPW
Y
--
G
-
D
-
I
Q
D
F
E
Y
N
F
K
Q
I
T
-
Y
-
F
S
K
--------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
47.21
25%
75
- C6 -
4DK0
-
?
A:
[207-378]
-------------------------------------------------------------------------------------------------------
T
---
P
T
-
I
I
---
K
--
V
---
A
D
---
L
-------------
S
K
M
R
I
K
P
E
I
----------
S
E
G
D
I
T
K
----------------
V
K
A
----
G
Q
---------
D
--
V
T
F
-------
T
I
L
S
D
N
K
-
T
V
Y
-------------
H
A
K
---
I
D
--------
S
V
DPATTTISD--------------
S
A
V
Y
Y
Y
A
N
I
I
-
V
-
E
N
P
E
H
V
L
R
I
G
-----------
M
----
T
T
E
N
N
I
K
I
A
D
V
Q
N
V
L
F
I
P
N
L
----
A
V
Q
-----------
Q
D
K
Y
V
V
-
N
V
L
----
N
--
T
T
Q
-
E
-
R
E
I
E
I
G
V
Q
N
D
F
Q
T
E
V
K
S
G
L
T
E
G
E
K
V
V
------------
I
SQ---------------
51
Fugue
44.51
15%
-4
- C4 -
3H3I
1
?
A:
[13-150]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
----------------
V
E
K
M---
A
G
---------
D
--
W
W
V
-------
T
V
N
A
F
I
D
-
G
K
E
V
E
DPFGA
G
H
L
Q
M
S
T
Y
N
---
T
A
--------
S
N
---------
S
E
---
T
--
E
M
W
-
L
D
D
L
G
N
F
W
E
Y
K
L
-
K
-
V
-
N
V
N
Y
A
A
R
T
-----------
F
----
S
T
T
G
F
V
D
N
V
T
Y
E
S
K
V
K
I
T
D
G
----
K
V
L
E
K
A
ATTPSG
M
P
A
D
S
I
V
Y
M
V
Q
F
D
D
D
E
D
G
L
T
Y
K
V
S
-
G
F
R
R
T
G
F
P
A
D
D
F
--------------------------------------------