@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0274: (2016-03-14 )
MAYPFNHKEFVAMMEQYNLKSNSITIPEHTILNDLVTENRDCVYLLKSGILAGYIDFDNDKIYSIFTSNFFMGYYTIFDNSSLVLTYQTLTECELIIYKKKDIEYSLSLFPENFSFQYTIMRTIAKHGYYKSLLQYRDKKDQLAFVFEMLVKILDIPVEDGVAVLPKSISTTVIKNYCTLSKAFFYSQLKELKEAGIISKVKLQWRINMEALSEKNNSIN
Atome Classification :
(20 SA)
--------.........10.....----...20.--........30.......--.--40........-----50....--..--..60---........70----........-80.--.--...-....90-.-------...-..-----------...100.......110-.-.......120----.........----130.---..-....-140...-....150-----...-......160.....-..170-........180-.......190.......200-....---.--..-210........220--------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------MAYPF
N
H
K
E
F
V
A
M
M
E
Q
----YNLK-S--N
S
I
TI
P
E
H
T
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N
D
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V
TE--N--R
D
C
V
Y
L
L
KSG-----I
L
A
G
Y
I
--DF--DN
D
K
---
I
Y
S
I
FTSN
F
F
----
M
G
Y
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T
I
FD-N-
S
--
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--
L
V
L
-
T
Y
QTL--T-------E
C
E
-
L
I
-----------
I
Y
K
KKD
I
E
Y
S
L
S
LFP--E-NFS
F
Q
Y
T
I
------
M
R
T
I
A
KH
G
Y
----
Y
K
S
L
---
L
Q
-YRDK-K
D
Q
L
A
F
-
V
F
E
M
L
-------
V
K
I
-LDIPVEDGVAVLPK-
S
I
S
T
--
T
V
I
K
N
Y
C
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L
S
K
-
A
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E
L
K
EAGI
I
S
K
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K
-
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---I--
N
M
-
E
-
A
L
SEKNNSIN----------------------------------------
9
HHSearch
83.46
16%
-140
- C2 -
3LA7
1
NTCA_NOSS1
A:
[42-234]
-------------------------------
P
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---
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K
-----------------------------------------------------
8
HHSearch
82.27
14%
-116
- C2 -
3I54
2
CRPL_MYCTU
A:
[32-248]
-------------
R
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AIAA--------
Q
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-----
G
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-----
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--
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G
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---
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------
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---
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L
A
R
R
A
--------------------------------------------
7
HHSearch
76.65
17%
-108
- C2 -
3IWZ
-
CLP_XANCP
A:
[30-228]
----------------------------
F
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-
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--
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-----
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--
E
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DD
D
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---
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D
-
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---
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-
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---
L
--
Y
G
-----------------------------------------------------
23
Fugue
75.07
17%
-111
- C2 -
4RFA
-
?
A:
[10-225]
------------
E
K
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D
T
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L
G
Y
L
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E
----
F
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Y
-
Y
--
K
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T
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N
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--
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EK
A
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I
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E
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-----
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A
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E
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--
E
D
--
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------
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M-
S
-------
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-----------
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F
A
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Y
----
A
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-----
G
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P
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A
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N
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-------
A
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---
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D
K
-
D
-
S
L
D
-----------------------------------------------
24
Fugue
74.88
16%
-98
- C2 -
1O3T
4
CRP_ECOLI
A:
[2-200]
------------
P
T
L
E
W
F
L
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C
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I
----
H
K
Y
P
-
S
--
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I
--
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--
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E
M
---
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------
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Q
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E
----
K
V
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N
---
L
A
-
F
L
D
V
-
T
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R
I
A
Q
-
T
L
L
N
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-------
A
K
Q
-
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A
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---
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Y
G
-----------------------------------------------------
15
HHSearch
71.60
16%
-106
- C2 -
2FMY
3
?
A:
[9-218]
--------------
T
N
L
L
E
V
L
N
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E
EYSG
V
L
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-----
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--
A
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E-
D
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---
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-------------------------------------------
4
HHSearch
71.55
12%
-102
- C2 -
3E97
2
?
A:
[10-224]
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R
S
P
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F
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N
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6
HHSearch
71.25
13%
-121
- C2 -
2GAU
-
?
A:
[16-230]
---------------
D
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-------------------------------------------
12
HHSearch
70.00
15%
-114
- C2 -
3KCC
3
CRP_ECOLI
A:
[59-257]
----------------------
D
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--
Y
------------------------------------------------------
5
HHSearch
68.86
14%
-115
- C2 -
2OZ6
2
VFR_PSEAE
A:
[9-205]
----------------------------
L
L
A
H
-
C
--
H
R
R
R
Y
T
A
K
S
T
I
I
Y
A
G
D
R
-----
C
E
T
L
F
F
I
I
K
G
-----
S
V
T
I
L
I
--
E
D
DD
G
R
E
M
---
I
I
G
Y
L
N
S
G
D
F
----
F
G
E
L
G
L
F
E
----Q-
E
--
R
S
A
-
W
V
R
A
K
--
V
-------
E
C
E
-
V
A
-----------
E
I
S
Y
A
K
F
R
E
L
S
Q
-----
Q
-
D
S
E
I
L
Y
T
L
------
G
S
Q
M
A
D
R
L
R
K
T
T
R
K
V
G
D
---
L
A
-
F
L
D
V
-
T
G
R
V
A
R
-
T
L
L
D
L
-------
C
Q
Q
-
P
D
A
M
T
H
P
--
D
G
M
Q
I
-
K
I
T
R
--
Q
E
I
G
R
I
V
G
C
S
R
-
E
M
V
G
R
V
L
K
S
L
E
E
Q
G
L
V
H
V
K
G
-
K
T
M
V
---
V
--
F
G
-----------------------------------------------------
14
HHSearch
66.84
14%
-108
- C2 -
1FT9
2
?
A:
[19-213]
----------------------------
F
F
R
G
-
F
--
R
S
K
I
H
A
K
G
S
L
V
C
T
G
E
G
D
-----
E
N
G
V
F
V
V
V
D
G
-----
R
L
R
V
Y
L
--
V
G
E-
E
R
E
I
---
S
L
F
Y
L
T
S
G
D
M
----
F
C
M
-----------
H
--
S
G
C
-
L
V
E
A
T
--
E
-------
R
T
E
-
V
R
-----------
F
A
D
I
R
T
F
E
Q
K
L
Q
-----
T
-
C
P
S
M
A
W
G
L
------
I
A
I
L
G
R
A
L
T
S
C
M
R
T
I
E
D
---
L
M
-
F
H
D
I
-
K
Q
R
I
A
G
-
F
F
I
D
H
-------
A
N
T
-
T
G
R
Q
T
---
G
V
I
V
S
V
-
D
F
T
V
--
E
E
I
A
N
L
I
G
S
S
R
-
Q
T
T
S
T
A
L
N
S
L
I
K
E
G
Y
I
S
R
Q
G
R
G
H
Y
T
---
I
--
P
N
L
V
-
R
L
K
A
A
A
--------------------------------------------
26
Fugue
64.97
12%
-99
- C2 -
1OMI
1
PRFA_LISMO
A:
[16-248]
--------------
G
S
E
F
K
K
Y
L
E
T
----
N
G
I
K
-
P
--
K
Q
F
H
-
K
K
E
L
I
F
N
Q
--
W
D
--
P
--
Q
E
Y
C
I
F
L
Y
D
G
-----
I
T
K
L
T
S
I
S
E
N
--
G
T
I
M
---
N
L
Q
Y
Y
K
G
A
F
V
----
I
M
S
G
F
I
D
T
-
E
-
T
--
S
--
V
G
Y
-
Y
N
L
E
V
IS
E
-------
Q
A
T
-
A
Y
-----------
V
I
K
I
N
E
L
K
E
L
L
S
K
N
L
--
T
H
F
F
Y
V
F
Q
T
L
------
Q
K
Q
V
S
Y
S
L
A
----
K
F
N
D
---
F
S
-
I
N
G
K
-
L
G
S
I
C
G
-
Q
L
L
I
L
-------
T
Y
V
-
Y
G
K
E
T
P
D
G
I
K
I
T
L
D
-
N
L
T
M
--
Q
E
L
---------
S
A
V
S
R
I
I
S
K
L
K
Q
E
K
V
I
V
Y
K
N
-
S
C
F
Y
---
V
Q-
N
L
-
D
-
Y
L
K
R
Y
A
P
K
L
D
E
W
F
Y
L
A
C
P
A
T
W
G
K
LN-------------------------
10
HHSearch
64.63
9%
-118
- C2 -
2BGC
1
PRFA_LISMO
A:
[13-221]
----------------------------
L
E
T
N
G
I
--
K
P
K
Q
F
H
K
K
E
L
I
F
N
Q
W
D
P
-----
Q
E
Y
C
I
F
L
Y
D
G
-----
I
T
K
L
T
S
--
I
S
EN
G
T
I
M
---
N
L
Q
Y
Y
-
K
G
A
F
----
V
I
M
S
G
F
I
D
-
T
-
E
--
T
SV
G
Y
Y
-
N
L
E
V
I
S-
E
-------
Q
A
T
-
A
Y
-----------
V
I
K
I
N
E
L
K
E
L
L
S
-----
K
-
N
L
T
H
F
F
Y
V
------
F
Q
T
L
Q
K
Q
V
S
Y
S
L
A
K
F
N
D
---
F
S
-
I
N
G
K
-
L
G
S
I
C
S
-
Q
L
L
I
L
-------
T
Y
V
-
Y
G
K
E
T
P
-
D
G
I
K
I
T
L
D
N
L
T
M
--
Q
E
L
G
Y
S
S
G
I
A
H
S
S
A
V
S
R
I
I
S
K
L
K
Q
E
K
V
I
V
Y
K
N
-
S
C
F
Y
---
V
--
Q
N
L
D
-
Y
L
K
R
Y
A
P
K
L
-----------------------------------------
20
HHSearch
64.34
13%
-118
- C2 -
3B02
-
?
A:
[2-189]
--------------------------------------
K
R
F
A
R
K
E
T
I
Y
L
R
G
E
E
-----
A
R
T
L
Y
R
L
E
E
G
-----
L
V
R
V
V
E
--
L
L
PD
G
R
L
I
---
T
L
R
H
V
L
P
G
D
Y
----
F
G
E
E
A
L
E
G
---
K
--
A
--
Y
R
Y
-
T
A
E
A
M
--
T
-------
E
A
V
-
V
Q
-----------
G
L
E
P
R
A
M
D
H
------------
E
A
L
H
R
V
------
A
R
N
L
A
R
Q
M
R
R
V
Q
A
Y
E
A
H
---
L
Q
-
T
G
E
L
-
R
A
R
I
A
R
-
Y
L
L
F
L
-------
A
D
T
-
P
L
S
A
R
--
D
R
Q
G
I
Y
V
-
T
V
S
H
--
E
E
I
A
D
A
T
A
S
I
R
-
E
S
V
S
K
V
L
A
D
L
R
R
E
G
L
I
A
T
A
Y
-
R
R
V
Y
---
L
--
L
D
L
A
-
A
L
E
R
E
A
G
-------------------------------------------
3
HHSearch
62.93
13%
-108
- C2 -
3DKW
-
?
A:
[14-226]
--------------
H
H
L
F
E
P
L
S
P
V
Q
L
Q
E
L
L
A
S
-
S
--
D
L
V
N
L
D
K
G
A
Y
V
F
R
Q
G
E
P
-----
A
H
A
F
Y
Y
L
I
S
G
-----
C
V
K
I
Y
R
--
L
T
PE
G
Q
E
K
---
I
L
E
V
T
N
E
R
N
T
----
F
A
E
A
M
M
F
M
-
D
-
T
--
P
N-
Y
V
A
-
T
A
Q
A
V
--
V
-------
P
S
Q
-
L
F
-----------
R
F
S
N
K
A
Y
L
R
Q
L
Q
-----
D
-
N
T
P
L
A
L
A
L
------
L
A
K
L
S
T
R
L
H
Q
R
I
D
E
I
E
T
---
L
S
-
L
K
N
A
-
T
H
R
V
V
R
-
Y
L
L
T
L
-------
A
A
H
-
A
P
G
----
E
N
C
R
V
E
I
-
P
V
A
K
--
Q
L
V
A
G
H
L
S
I
Q
P
-
E
T
F
S
R
I
M
H
R
L
G
D
E
G
I
I
H
L
D
G
-
R
E
I
S
---
I
--
L
D
-
R
E
R
L
E
C
F
---------------------------------------------
17
HHSearch
62.27
13%
-92
- C2 -
3FX3
3
?
A:
[16-227]
--------------
S
L
L
I
R
S
L
P
E
Q
H
V
D
A
L
L
S
Q
-
A
--
V
W
R
S
Y
D
R
G
E
T
L
F
L
Q
E
E
K
-----
A
Q
A
I
H
V
V
I
D
G
-----
W
V
K
L
F
R
--
M
T
PT
G
S
E
A
---
V
V
S
V
F
T
R
G
E
S
----
F
G
E
A
V
A
L
R
-
N
-
T
--
P
--
Y
P
V
-
S
A
E
A
V
--
T
-------
P
C
E
-
V
M
-----------
H
I
P
S
P
V
F
V
S
L
M
R
-----
R
-
D
P
E
I
C
I
S
I
------
L
A
T
T
F
G
H
L
H
S
L
V
A
Q
L
E
Q
---
L
K
-
A
Q
T
G
-
A
Q
R
V
A
E
-
F
L
L
E
L
-------
C
D
C
-----------
E
V
T
L
-
P
Y
D
K
--
M
L
I
A
G
R
L
G
M
K
P
-
E
S
L
S
R
A
F
S
R
L
K
A
A
G
V
T
V
-
K
R
-
N
H
A
E
---
I
--
E
D
I
A
-
L
L
R
D
Y
A
E
-------------------------------------------
25
Fugue
60.68
9%
-97
- C2 -
1FT9
2
?
A:
[2-213]
-------P
P
R
F
N
I
A
N
V
L
L
S
P
D
G
E
T
----
F
F
R
G
-
F
--
R
S
K
I
H
A
K
G
S
L
V
C
T
G
E
G
D
--
E
--
N
G
V
F
V
V
V
D
G
R
-----
L
R
V
Y
L
V
--
G
E
--
E
R
E
I
---
S
L
F
Y
L
T
S
G
D
M
----
F
C
---------
M
--
H
--
S
G
C
-
L
V
E
A
T
--
E
-------
R
T
E
-
V
R
-----------
F
A
D
I
R
T
F
E
Q
K
L
Q
T
C
P
--
S
-
M
A
W
G
L
I
A
I
------
L
G
--
R
A
L
T
S
----
C
M
R
T
---
I
E
-
D
L
M
F
-
H
D
I
K
Q
R
-
I
A
G
F
F
-------
I
D
H
-
A
N
T
T
G
R
Q
T
G
V
I
V
S
V
-
D
F
T
V
--
E
E
I
A
N
L
I
G
S
S
R
-
Q
T
T
S
T
A
L
N
S
L
I
K
E
G
Y
I
S
R
Q
G
-
R
G
H
Y
---
T
I
P
N
L
-
V
-
R
L
K
A
A
A
--------------------------------------------
31
Fugue
60.27
22%
-71
* C3 *
4Q4D
5
VIP2_HUMAN
A:
[7-323]
Q
I
V
V
G
I
C
S
M
A
K
K
S
K
S
K
P
M
K
E
I
L
E
R
----
I
S
L
F
-
K
Y
I
T
V
V
V
F
E
E
E
V
I
L
N
E
P
V
E
N
WP
L
--
C
D
C
L
I
S
F
H
S
K
GFP
L
D
K
A
V
A
Y
A
--
K
L
--
R
N
P
F
---
V
I
N
D
L
N
M
Q
Y
L
I
Q
D
R
R
E
V
Y
S
I
L
Q
-
A
-
E
--
G
--
I
L
L
P
R
Y
A
I
L
--
N
R
D
PNNPK
E
C
N
-
L
I
E
G
ED
H
V
E
V
NG
E
V
F
Q
K
P
F
V
E
K
P
V
S
A
E
D
--
H
-
N
V
Y
I
Y
Y
P
T
SAG
G
G
S
Q
R
L
F
R
K
I
G
S
----
R
S
S
V
---
Y
S
-
P
E
S
N
V
R
K
T
G
S
Y
-
I
Y
E
E
F
MPTDG
T
D
V
K
V
-
Y
T
V
G
P
D
Y
A
H
A
E
A
R
K
-
S
P
A
L
DG
K
V
E
R
D
--
S
E
G
K
-
E
V
R
Y
P
V
I
L
N
A
R
E
K
L
I
A
W
K
V
C
-
L
A
F
K
QT
V
C
--
G
F
-
D
-
L
L
R
A
N
G
Q
S
Y
V
C
D
V
N
G
F
S
F
V
K
NS
M
K
Y
Y
D
D
C
A
K
I
L
G
N
I
V
M
R
E
LAPQFHIPWS
18
HHSearch
59.79
12%
-106
- C2 -
3E6C
3
?
C:
[28-227]
----------------------------
Y
T
Q
M
-
G
--
L
I
R
D
F
A
K
G
S
A
V
I
M
P
G
E
E
-----
I
T
S
M
I
F
L
V
E
G
-----
K
I
K
L
D
I
--
I
F
ED
G
S
E
K
---
L
L
Y
Y
A
G
G
N
S
L
----
I
G
K
L
Y
P
T
G
---------
N
N
I
-
Y
A
T
A
M
--
E
-------
P
T
R
-
T
C
-----------
W
F
S
E
K
S
L
R
T
V
F
R
-----
T
-
D
E
D
M
I
F
E
I
------
F
K
N
Y
L
T
K
V
A
YYAR
Q
V
A
E
---
M
N
-
T
Y
N
P
-
T
I
R
I
L
R
-
L
F
Y
E
L
-------
C
S
S
-
Q
G
K
R
V
G
-
D
T
Y
E
I
T
M
-
P
L
S
Q
--
K
S
I
G
E
I
T
G
V
H
H
-
V
T
V
S
R
V
L
A
S
L
K
R
E
N
I
L
D
K
K
K
-
N
K
I
I
---
V
--
Y
N
-
L
G
E
L
K
H
L
S
E
-------------------------------------------
22
HHSearch
59.07
16%
-107
- C2 -
2PQQ
1
?
A:
[9-136]
-------------
R
N
P
L
F
A
A
L
D
D
E
Q
S
A
E
L
R
A
S
-
M
--
S
E
V
T
L
A
R
G
D
T
L
F
H
E
G
D
P
-----
G
D
R
L
Y
V
V
T
E
G
-----
K
V
K
L
H
R
--
T
S
PD
G
R
E
N
---
M
L
A
V
V
G
P
S
E
L
----
I
G
E
L
S
L
F
D
-
P
-
G
--
P
--
R
T
A
-
T
G
T
A
L
--
T
-------
E
V
K
-
L
L
-----------
A
L
G
H
G
D
L
Q
P
W
L
N
-----
V
-
R
P
E
V
A
T
A
L
------
L
R
A
V
A
R
R
L
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------