@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0296: (2016-03-14 )
MKFLKKYGFYFLLLGVLSDFLTPYILGIFYPELNQMTRVMSVFGDVTSPVRGAFLVWSVVSGVFFVLALPAIYQSVVKTSRTLAILLASAIGLYGIGDCIFTGLFSIDTEQASWTFSTWVHNIGSGLGYAGFLIFPLFLVILYRKTGDKTRSNIYLVLLIVSLLSAGVYGLARIPAVNDLPVLDKIGFCQRISFFFNYLPIVVFGIDRIRKP
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------.....--....10....------....20-------.....---...30......---..40.....-------..---------------.50-----.--.....----------...60-.------------..---....--.70.....-----------------...80....-...-.90---.....----....100...-..------..110.....-----..120---........130....-----...140.....-----..-150--------.......160.---......170.......180.------.-------...--..190......-.200.......210------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------
M
K
F
L
K
--
K
Y
G
F
Y
F
L
L
L
G
------
V
L
S
D
F
L
-------
T
P
Y
I
L
---
G
I
F
Y
P
E
L
N
Q
M
T
---
R
V
M
S
V
F
G
DV-------TS---------------PV------
R
--
G
A
F
L
V
----------
W
S
V
V
S
-
G
------------
V
F
---
F
V
L
A
--
L
P
A
I
Y
Q
S
V
-----------------
V
K
T
S
R
T
L
A
I
-
L
L
A
-
S
A
----
I
G
L
YG----
I
G
D
C
I
F
T
G
L
F-SI------DTEQA
S
W
T
F
S
-----
T
W
V
H
----
N
IGS
G
L
G
Y
A
G
F
L
I
F
P
-----
L
F
L
V
I
L
Y
RKTG-----DK-TRS--------
N
I
Y
L
V
L
L
I
V
S
L
---
L
S
A
G
V
Y
GLARIPAVNDLP
V
L
------
D
-------
K
I
G
--
F
C
Q
R
I
S
F
F
F
N
Y
-
L
P
I
V
V
F
G
I
D
R
IRKP------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
84.17
21%
-158
* C7 *
4XGC
1
ORC2_DROME
B:
[62-352]
-------------------------------------------------------------------------------------------------------------------------E
G
S
I
N
A
I
M
E
E
Y
R
S
Y
F
P
K
W
M
C
I
L
N
--
E
-
G
F
N
I
L
L
Y
G
LGSK
H
Q
L
L
Q
S
F
H
R
EVLHKQ
T
V
L
V
V
---
N
G
F
F
P
S
L
T
I
K
D
---
M
L
D
S
I
T
S
D
I
LDAGISP
A
N
---------------
P
H
------
E
--
A
V
D
M
I
E
E
E
-------
F
A
L
I
P
-
E
------------
T
H
---
L
F
L
I
--
V
H
N
L
D
G
A
M
-----------------
L
R
N
V
K
A
Q
A
I
-
L
S
R
-
L
A
R
IPN
I
H
L
L
A
----
S
I
D
H
I
N
T
P
L
L
-
W
D
------
Q
G
K
L
C
S
F
N
F
S
-----
W
W
------
D
C
T
T
M
L
P
Y
T
N
E
T
A
F
E
NSLLV
L
A
L
S
S
M
R
S
V
F
S
-----
S
L
-
T
T
N
--------
S
R
G
I
Y
M
L
I
V
K
Y
---
Q
L
K
N
K
G
N
A
T
G
M
P
F
R
D
L
Y
S
S
C
------
R
E
A
FLVSS
D
L
A
--
L
R
A
Q
L
T
E
F
L
D
H
K
L
V
K
S
K
R
S
S
E
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L
T
I
P
ID
G
A
L
L
Q
Q
F
L
E
E
Q
E----------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
Fugue
83.17
18%
-149
- C6 -
4WZR
1
K0020_HUMAN
A:
[9-524]
N
Y
D
I
V
V
R
A
K
Q
M
W
E
I
L
R
RKDCD
K
E
K
R
V
K
L
M
S
D
L
Q
K
L
I
QGK
I
K
T
I
A
F
AHDS
T
R
V
I
Q
C
Y
I
Q
Y
GN
E
E
Q
R
K
Q
A
F
E
E
L
RDD
L
V
E
L
S
KAKYS
R
N
I
V
K
K
F
L
M
YGS
K
P
Q
I
A
E
I
I
R
S
F
KGH
V
R
K
M
L
R
H
A
E
A
S
A
I
V
E
Y
A
Y
N
DKAI
L
E
Q
R
N
M
L
T
E
E
--
L
Y
G
N
T
F
Q
L
Y
---------
K
S
A
D
-------
H
P
T
L
D
---
K
V
L
E
L
Q
P
E
K
L
E
---
L
I
M
D
E
M
K
Q
I
-------
L
T
---------------
P
M
------
A
Q
K
E
A
V
I
K
----------
H
S
L
V
H
-
K
------------
V
F
L
D
F
F
T
Y
A
--
P
P
K
L
R
S
E
M
-----------------
I
E
A
I
R
E
A
V
V
-
Y
L
A
H
T
H
----
D
G
A
R
V
----
A
M
H
C
L
W
H
G
T
--
P
K
------
D
R
K
V
I
V
K
T
M
K
-----
T
Y
V
E
----
K
V
A
N
G
-
Q
Y
S
H
L
V
L
L
A
-----
A
F
D
C
I
--------------
D
D
T
--------
K
L
V
K
Q
I
I
I
S
E
I
---
I
S
-------------
S
L
P
S
I
------
V
-------
N
D
K
--
Y
G
R
K
V
L
L
Y
L
L
S
-
P
R
D
P
A
H
T
V
R
E
I
I
E
V
L
Q
K
GDGNAHSKKD
T
E
V
R
R
R
E
L
L
E
S
I
S
P
A
L
L
S
Y
L
Q
E
H
A
Q
E
V
V
L
DKSA
C
V
L
V
S
D
I
L
G
SATGDV
Q
P
T
M
N
A
I
A
S
L
A
ATGLHPGGKDGELHIAEH
P
A
G
H
L
V
L
K
W
L
I
E
Q
D
K
K
M
K
E
N
GREGC
F
A
K
T
L
V
E
H
V
G
M
K
N
L
K
S
W
A
S
V
N
R
G
A
I
I
L
S
S
L
L
Q
SCD
L
E
V
A
N
K
V
K
A
A
L
KSLIPTLES
K
G
I
E
I
L
L
E
K
L
36
Fugue
67.87
12%
-157
- C5 -
4WZI
5
PDE4B_HUMAN
A:
[85-576]
-----------------------------VT
P
F
A
Q
V
L
A
S
L
R
S
V
R
N
N
F
T
IQ
K
L
A
M
E
T
L
E
E
L
D
W
A
L
D
Q
L
E
T
I
QT
Y
R
S
V
S
E
M
A
S
N
K
F
K
R
M
L
N
R
E
L
T
H
L
S
E
M
S
R
C
G
N
Q
V
S
E
Y
I
S
N
T
FLDKE
N
E
D
H
L
A
K
E
L
E
DLNKWGLN
I
F
N
V
A
G
Y
S
H
--
N
R
P
L
T
A
I
M
Y
A
------
I
F
Q
E
R
D
-------
L
L
K
T
F
---
R
I
S
S
D
T
F
I
T
Y
M
---
M
T
L
E
D
H
Y
H
S
-------
D
V
---------------
A
Y
------
H
--
N
S
L
H
A
----------
A
D
V
A
Q
-
S
------------
T
H
---
V
L
L
S
--
T
P
A
L
-
D
A
V
-----------------
F
T
D
L
E
I
L
A
A
-
I
F
A
-
A
A
----
I
--
H
D
----
V
D
H
P
G
V
S
N
Q
F
-
L
I
------
N
T
N
S
E
L
A
L
M
Y
-----
N
D
E
S
----
V
L
E
N
H
H
L
A
V
G
F
K
L
L
Q
-----
E
E
H
A
D
I
F
M
N
L
T
-----
K
K
-
Q
R
Q
--------
T
L
R
K
M
V
I
D
M
V
L
A
T
D
M
S
K
H
M
S
L
L
A
D
L
K
T
M
V
E
T
K
K
V
------
T
-------
S
S
G
V
L
L
L
D
N
Y
T
D
R
I
Q
V
-
L
R
N
M
V
H
A
A
D
-
L
S
N
P
TKS
L
E
L
Y
R
Q
W
T
D
R
I
M
E
E
F
F
Q
Q
G
D
K
E
R
E
R
GMEISPMADKHTAC
V
E
K
S
Q
V
G
F
I
D
Y
I
V
H
P
L
W
E
T
W
A
D
L
V
QPDA
Q
D
I
L
D
T
L
E
D
N
R
N
W
Y
Q
A
M
IP-------------------------------------------------------------------------------------------
31
Fugue
67.18
15%
-133
* C6 *
3U4T
-
?
A:
[230-487]
--------------------------------------------------------------------------------------------------------------------------------------V
E
F
R
Y
A
D
F
L
F
--
K
N
N
N
Y
A
E
A
I
E
------
V
F
N
K
L
E
A
K
KYN--
S
P
Y
I
Y
N
R
R
A
V
C
Y
Y
E
L
A
K
Y
D
---
L
A
Q
K
D
I
E
T
Y
-------
F
S
---------------
K
V
NATKAK
S
--
A
D
F
E
Y
----------
Y
G
K
I
L
M
K
------------
K
G
---
Q
D
S
L
--
A
I
Q
Q
Y
Q
A
A
-----------------
V
D
R
D
T
T
R
L
D
M
Y
G
Q
-
I
G
----
S
Y
F
Y
N
----
K
G
N
F
P
L
A
I
Q
Y
M
E
K
QIRPTT
T
D
P
K
V
F
Y
E
L
G
-----
Q
A
Y
Y
Y
N
KE
Y
V
K
A
D
S
S
F
V
K
V
L
E
L
K
PN---
I
Y
I
G
Y
L
W
R
A
R
A
-----
N
A
-
A
Q
D
P
DTKQGLA
K
P
Y
Y
E
K
L
I
E
V
C
---
A
P
G
G
A
K
Y
K
D
E
L
I
E
A
N
E
Y
I
A
Y
Y
Y
T
I
N
R
D
-------
K
V
K
--
A
D
A
A
W
K
N
I
L
A
L
-
D
P
T
N
K
K
A
I
D
G
L
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
62.17
21%
-147
- C4 -
4Q7O
8
?
A:
[4-136]
--------------------------------------------------------------------------------------------------------------------------------------------------
M
K
N
N
I
F
L
N
L
N
------
K
K
S
I
N
N
-------
N
H
F
V
I
---
S
I
F
F
E
T
I
Y
Q
F
E
T
K
D
T
L
L
E
C
F
K
N
I
-------
T
T
TG
H
F
-----------
G
V
------
I
--
G
A
Q
Y
E
K
I
DATRWIGD
Y
E
E
V
N
-
G
------------
F
E
---
Y
I
D
K
--
A
P
S
I
Y
F
S
V
G
D---------------
D
F
N
P
E
E
L
I
I
-
P
I
N
-
L
A
----
Y
H
Y
F
N
----
I
A
I
S
D
F
L
I
A
H
-
P
E
------
Y
Q
K
K
C
K
E
I
Q
K
-----
T
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
59.92
12%
-103
- C5 -
3K1Q
-
?
F:
[1-276]
------------------------------------------------------------------------------------------------------MPLHMIPQVAHAMVRAAAAGRLTLYTRTRTETTNFDH
A
E
Y
V
T
CG
R
Y
T
I
C
A
F
C
L
T
------
T
L
A
P
H
A
-------
N
V
K
T
I
---
Q
D
S
H
A
C
S
R
Q
P
N
---
E
A
I
R
S
L
V
E
V
-------
S
D
KAQTALVGSRTVDYH
E
L
------
D
--
V
K
A
G
F
----------
V
A
P
T
A
-
D
------------
E
T
---
I
A
P
S
KD
I
V
E
L
P
F
R
T
-----------------
C
D
L
D
D
S
S
A
T
-
A
C
V
-
R
N
----
H
C
Q
A
G
HDGV
I
H
L
P
I
L
S
G
D
F
-
K
L
------
P
N
E
H
P
T
K
P
L
D
DTHPH
D
K
V
L
----
T
R
C
P
K
T
G
L
L
L
V
H
D
T
H
-----
A
H
A
T
A
V
V
A
T
A
A
-----
T
R
-
A
I
L
--------
M
H
D
L
L
T
S
A
N
A
D
---
D
G
H
Q
A
R
S
A
C
Y
G
P
A
F
N
N
L
T
-
F
------
A
-------
C
H
S
--
T
C
A
S
D
M
A
H
F
D
C
-
G
Q
I
V
--
G
L
D
L
H
V
E
P
SD----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
58.66
8%
-120
* C5 *
1L8W
-
?
A:
[52-342]
------------------------------------------------------------------------------------------------------------------------G
G
L
V
A
E
A
F
G
FKSDPK
K
S
D
V
K
T
Y
F
T
--
T
V
A
A
K
L
E
K
T
K
------
T
D
L
N
S
L
-------
P
T
A
V
E
---
G
A
I
K
E
V
S
E
L
L
D
---
K
L
V
K
A
V
K
T
A
-------
E
G
---------------
A
S
------
S
--
G
T
A
A
I
----------
G
E
V
V
A
-
D
ADAAKVAD
K
A
S
V
K
G
---
I
A
K
G
--
I
K
E
I
V
E
A
A
GGSEKLKAVAAAKGENN
K
G
A
G
K
L
F
G
K
-
A
G
A
-
A
A
----
H
G
D
S
E
----
A
A
S
K
A
A
G
A
V
S
-
A
V
------
S
G
E
Q
I
L
S
A
I
V
-----
T
A
A
D
----
A
A
E
Q
D
G
K
K
P
E
E
A
K
N
P
-----
I
A
A
A
I
G
D
K
D
G
G
AEFGQ
D
E
M
K
K
D
--------
D
Q
I
A
A
A
I
A
L
R
G
M
--
A
K
D
G
K
F
A
V
K
D
G
E
K
E
K
A
E
G
A
I
------
K
-------
G
A
A
--
E
S
A
V
R
K
V
L
G
A
I
-
T
G
L
I
G
D
A
V
S
S
G
L
R
K
V
G
D
S--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
47.10
36%
107
- C8 -
1IVV
1
PAOX_ARTGO
A:
[590-623]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
G
L
T
H
F
P
R
V
E
D
W
P
I
M
P
V
----
D
-------
T
V
G
--
F
K
L
R
P
E
G
F
F
D
R
-
S
P
V
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
47.07
36%
20
- C8 -
1WMP
1
PAOX_ARTGO
A:
[588-623]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
G
L
T
H
F
P
R
V
E
D
W
P
I
M
P
V
----
D
-------
T
V
G
--
F
K
L
R
P
E
G
F
F
D
R
-
S
P
V
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
46.94
36%
24
- C8 -
1IVU
1
PAOX_ARTGO
A:
[588-623]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
G
L
T
H
F
P
R
V
E
D
W
P
I
M
P
V
----
D
-------
T
V
G
--
F
K
L
R
P
E
G
F
F
D
R
-
S
P
V
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
46.89
36%
93
- C8 -
1AV4
1
PAOX_ARTGO
A:
[590-623]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
G
L
T
H
F
P
R
V
E
D
W
P
I
M
P
V
----
D
-------
T
V
G
--
F
K
L
R
P
E
G
F
F
D
R
-
S
P
V
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
46.76
36%
106
- C8 -
1IVW
1
PAOX_ARTGO
A:
[590-623]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
G
L
T
H
F
P
R
V
E
D
W
P
I
M
P
V
----
D
-------
T
V
G
--
F
K
L
R
P
E
G
F
F
D
R
-
S
P
V
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
46.74
36%
107
- C8 -
1WMN
1
PAOX_ARTGO
A:
[590-623]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
G
L
T
H
F
P
R
V
E
D
W
P
I
M
P
V
----
D
-------
T
V
G
--
F
K
L
R
P
E
G
F
F
D
R
-
S
P
V
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
46.71
36%
115
- C8 -
1IU7
1
PAOX_ARTGO
A:
[590-623]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
G
L
T
H
F
P
R
V
E
D
W
P
I
M
P
V
----
D
-------
T
V
G
--
F
K
L
R
P
E
G
F
F
D
R
-
S
P
V
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
46.69
36%
99
- C8 -
1WMO
1
PAOX_ARTGO
A:
[590-623]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
G
L
T
H
F
P
R
V
E
D
W
P
I
M
P
V
----
D
-------
T
V
G
--
F
K
L
R
P
E
G
F
F
D
R
-
S
P
V
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
46.69
36%
109
- C8 -
1IQY
1
PAOX_ARTGO
A:
[590-623]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
G
L
T
H
F
P
R
V
E
D
W
P
I
M
P
V
----
D
-------
T
V
G
--
F
K
L
R
P
E
G
F
F
D
R
-
S
P
V
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
46.60
36%
118
- C8 -
1RJO
2
PAOX_ARTGO
A:
[588-621]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
G
L
T
H
F
P
R
V
E
D
W
P
I
M
P
V
----
D
-------
T
V
G
--
F
K
L
R
P
E
G
F
F
D
R
-
S
P
V
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
46.41
36%
103
- C8 -
1IVX
1
PAOX_ARTGO
A:
[590-623]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
G
L
T
H
F
P
R
V
E
D
W
P
I
M
P
V
----
D
-------
T
V
G
--
F
K
L
R
P
E
G
F
F
D
R
-
S
P
V
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
46.27
36%
109
- C8 -
1IQX
1
PAOX_ARTGO
A:
[590-623]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
G
L
T
H
F
P
R
V
E
D
W
P
I
M
P
V
----
D
-------
T
V
G
--
F
K
L
R
P
E
G
F
F
D
R
-
S
P
V
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
46.05
36%
107
- C8 -
1AVL
1
PAOX_ARTGO
A:
[590-623]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
G
L
T
H
F
P
R
V
E
D
W
P
I
M
P
V
----
D
-------
T
V
G
--
F
K
L
R
P
E
G
F
F
D
R
-
S
P
V
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------