@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0303: (2016-03-14 )
MSKKLVSIIFLGICLLLVGCGKEVVDSKYTGKWKLESSGIGMSDGSNYKETDAAGKVSLDLDIDAEGNVKELYIDDAVAITNSYKLKKKGDDEYQYDGTLISKKVYSYETESDKENVETMLKFLKSKDNVKITKNEQKGDEYHIDVKADEKDFVFSLEMQSGKLIFKKVDTKEKVLIKETYKKN
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10--........20.....--...30....----....40--.......----..-50........---------------60....-....70---....-.....80.---------...--------....90.........100....--..-.110.-------.-.....120.......130.....-..-140.......150---------...--...----------..160...----....170........180..-----------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MS
K
K
L
V
S
I
I
F
L
--
G
I
C
L
L
L
VGC
G
K
E
V
VD--SKYT
G
K
W
K
L----ESSGI---GMSDGSN----YK-ETDAA
G
K
V
S
L
---------------
D
L
D
IDA-EG
N
V
K
----
E
L
Y
I-D
D
A
V
A
ITN---------
S
Y
K
--------LKKKG-DDEYQYD
G
T
L
I
S
K
K
V
Y
--
S
Y-ETES
D
-------
K
-
E
N
V
E
T
M
L
K
F
L
KSKD
N
V
K
I
TKNEQ-KG-
D
E
Y
H
I
D
V
KADEK----------
D
F
V
--
F
S
L
----------EMQS
G
K
L
I
----
F
K
KVDT-KE
K
V
L
I
K
E
T
YKKN-----------------------------------
54
Fugue
78.12
18%
14
- C18 -
2QUO
1
A:
[4-126]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
E
I
L
D
L
--
A
A
A
T
E
R
L
N
L
T
D
A
L
N
S
--
N
P
A
G
N
L
Y
D
W
----
R
S
S
----------
N
S
----
Y
P
-
W
T
Q
---
K
L
N
L
---------------
H
L
T
I
T
A
-
T
G
Q
K
Y
----
R
I
L
A
-
S
----------------------------------------------
K
I
V
--
D
F
-
N
I
Y
S
N
-------
N
-
F
N
-----------
N
L
V
K
L
E
Q
S
L
G
-
D
G
V
K
D
H
Y
V
D
I
S
L
D
A
G
----------
Q
Y
V
--
L
V
M
----------
K
A
N
S
------------
S
Y
-
S
G
N
Y
P
Y
S
I
L
F
Q
K
F
-----------------------------------
7
PsiBlast_PDB
76.57
25%
16
- C19 -
1IFB
-
FABPI_RAT
A:
[2-107]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
D
G
T
W
K
V
D
R
N
E
--
N
Y
-
E
K
F
M
E
-------
K
-
M
G
I
N
V
V
K
R
K
L
G
A
H
D
N
L
K
L
T
I
T
-
Q
-
E
G
-
N
K
F
T
V
K
E
S
S
N
F
R
N
I
D
V
V
F
E
LG
V
D
F
A
--
Y
S
L
ADGT
E
L
T
G
T
W
T
M
E
G
N
K
L
V
G
K
--
F
K
R
V
D
N
G
K
E
L
I
A
V
R
E
----------------------------------------
9
PsiBlast_PDB
75.70
25%
14
- C19 -
2IFB
1
FABPI_RAT
A:
[2-107]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
D
G
T
W
K
V
D
R
N
E
--
N
Y
-
E
K
F
M
E
-------
K
-
M
G
I
N
V
V
K
R
K
L
G
A
H
D
N
L
K
L
T
I
T
-
Q
-
E
G
-
N
K
F
T
V
K
E
S
S
N
F
R
N
I
D
V
V
F
E
LG
V
D
F
A
--
Y
S
L
ADG
T
E
L
T
G
T
W
T
M
E
G
N
K
L
V
G
K
--
F
K
R
V
D
N
G
K
E
L
I
A
V
R
E
----------------------------------------
6
PsiBlast_PDB
74.37
25%
17
- C19 -
1ICM
1
FABPI_RAT
A:
[2-107]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
D
G
T
W
K
V
D
R
N
E
--
N
Y
-
E
K
F
M
E
-------
K
-
M
G
I
N
V
V
K
R
K
L
G
A
H
D
N
L
K
L
T
I
T
-
Q
-
E
G
-
N
K
F
T
V
K
E
S
S
N
F
R
N
I
D
V
V
F
E
LG
V
D
F
A
--
Y
S
L
ADG
T
E
L
T
G
T
W
T
M
E
G
N
K
L
V
G
K
--
F
K
R
V
D
N
G
K
E
L
I
A
V
R
E
----------------------------------------
12
PsiBlast_PDB
74.28
25%
9
- C19 -
1ICN
1
FABPI_RAT
A:
[2-107]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
D
G
T
W
K
V
D
R
N
E
--
N
Y
-
E
K
F
M
E
-------
K
-
M
G
I
N
V
V
K
R
K
L
G
A
H
D
N
L
K
L
T
I
T
-
Q
-
E
G
-
N
K
F
T
V
K
E
S
S
N
F
R
N
I
D
V
V
F
E
LG
V
D
F
A
--
Y
S
L
ADG
T
E
L
T
G
T
W
T
M
E
G
N
K
L
V
G
K
--
F
K
R
V
D
N
G
K
E
L
I
A
V
Q
E
----------------------------------------
10
PsiBlast_PDB
74.24
25%
10
- C19 -
3AKN
1
FABPI_RAT
A:
[2-107]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
D
G
T
W
K
V
D
R
N
E
--
N
Y
-
E
K
F
M
E
-------
K
-
M
G
I
N
V
V
K
R
K
L
G
A
H
D
N
L
K
L
T
I
T
-
Q
-
E
G
-
N
K
F
T
V
K
E
S
S
N
F
R
N
I
D
V
V
F
E
LG
V
D
F
A
--
Y
S
L
ADG
T
E
L
T
G
T
W
T
M
E
G
N
K
L
V
G
K
--
F
K
R
V
D
N
G
K
E
L
I
A
V
R
E
----------------------------------------
4
PsiBlast_PDB
74.03
25%
15
- C19 -
1IFC
-
FABPI_RAT
A:
[2-107]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
D
G
T
W
K
V
D
R
N
E
--
N
Y
-
E
K
F
M
E
-------
K
-
M
G
I
N
V
V
K
R
K
L
G
A
H
D
N
L
K
L
T
I
T
-
Q
-
E
G
-
N
K
F
T
V
K
E
S
S
N
F
R
N
I
D
V
V
F
E
LG
V
D
F
A
--
Y
S
L
ADG
T
E
L
T
G
T
W
T
M
E
G
N
K
L
V
G
K
--
F
K
R
V
D
N
G
K
E
L
I
A
V
R
E
----------------------------------------
11
PsiBlast_PDB
72.83
25%
24
- C19 -
1DC9
-
FABPI_RAT
A:
[2-107]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
D
G
T
W
K
V
D
R
N
E
--
N
Y
-
E
K
F
M
E
-------
K
-
M
G
I
N
V
V
K
R
K
L
G
A
H
D
N
L
K
L
T
I
T
-
Q
-
E
G
-
N
K
F
T
V
K
E
S
S
N
F
R
N
I
D
N
V
F
E
LG
V
D
F
A
--
Y
S
L
ADG
T
E
L
T
G
T
W
T
M
E
G
N
K
L
V
G
K
--
F
K
R
V
D
N
G
K
E
L
I
A
V
R
E
----------------------------------------
8
PsiBlast_PDB
69.48
25%
8
- C19 -
1URE
1
FABPI_RAT
A:
[2-107]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
D
G
T
W
K
V
D
R
N
E
--
N
Y
-
E
K
F
M
E
-------
K
-
M
G
I
N
V
V
K
R
K
L
G
A
H
D
N
L
K
L
T
I
T
-
Q
-
E
G
-
N
K
F
T
V
K
E
S
S
N
F
R
NIDVVFELG
V
D
F
A
--
Y
S
L
ADG
T
E
L
T
G
T
W
T
M
E
G
N
K
L
V
G
K
--
F
K
R
V
D
N
G
K
E
L
I
A
V
R
E
----------------------------------------
56
Fugue
69.25
22%
31
* C18 *
2LN3
-
?
A:
[1-83]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
L
T
R
----
T
I
T
S
Q
N
K
E
E
L
L
E
I
---------
A
L
K
--------
F
I
S
Q
G
L
D
L
E
V
E
F
D
S
T
-------------
D
D
K
E
-------
I
-
E
E
F
E
R
D
M
E
D
L
A
K
K
T
G
V
Q
I
Q
K
Q
W
Q
--
G
-
N
K
L
R
I
R
L
K
G
S
L
E
----------
H
H
H
--
H
H
H
-----------------------------------------------------------------------------
5
PsiBlast_PDB
67.68
25%
29
- C19 -
1AEL
-
FABPI_RAT
A:
[2-107]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
D
G
T
W
K
V
D
R
N
E
--
N
Y
-
E
K
F
M
E
-------
K
-
M
G
I
N
V
V
K
R
K
L
G
A
H
D
N
L
K
L
T
I
T
-
Q
-
E
G
-
N
K
F
T
V
K
E
S
S
N
F
R
N
I
D
V
V
F
EL
G
V
D
F
A
--
Y
S
L
ADG
T
E
L
T
G
T
W
T
M
E
G
N
K
L
V
GK--
F
K
R
V
D
N
G
K
E
L
I
A
V
R
E
----------------------------------------
58
Fugue
66.43
21%
29
- C16 -
2XQH
4
?
A:
[23-280]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
D
A
K
A
S
G
E
F
S
------
V
A
V
G
N
G
A
R
A
T
E
KA
S
T
A
V
G
S
W
A
A
ADGK
Q
S
T
A
L
---
G
V
G
T
Y
A
Y
----
A
N
-
A
S
T
A
L
G
S
V
A
F
V
D
NTATY
G
T
A
A
G
NRA
K
V
D
K
D
A
T
E
G
T
A
L
G
AKA
T
V
T
N
-
K
N
S
V
A
L
G
A
N
S
V
T
T
R
DNE
V
Y
I
--------
G
Y
K
T
G
-
T
E
S
D
K
T
Y
G
T
R
V
L
G
G
L
S
--
D
G
-
T
R
N
S
D
AAT
V
G
Q
L
N
-
R
K
V
G
G
V
Y
D
D
V
K
A
R
I
T
V
E
S
E
K
Q
K
K
-
Y
T
-
D
Q
K
T
S
E
V
N
E
K
V
E
----------
A
R
T
--
T
V
G
----------
V
D
S
D
G
K
L
T
RAEG
A
T
K
T
I
A
-
V
N
D
G
L
V
A
L
S
G
R
T
D
R
I
D
Y
A
V
G
A
I
D
G
R
V
T
R
N
T
Q
S
I
E
K
N
S
K
A
I
A
A
N
T
RT--
51
Fugue
65.49
17%
10
- C18 -
4MR0
7
PFBA_STRR6
A:
[114-571]
TALSVKDYGAVGDGIHDD
R
Q
A
I
Q
D
A
I
D
A
A
A
Q
GLGGG
N
V
Y
F
P
E
G
T
Y
L
V
K
E
I
V
F
L
K
S
H
T
H
L
E
L
N
EK
A
T
I
L
N
GINIKNHPSIVFMT
G
L
F
T
D
DGA
Q
V
E
W
G
P
TED
I
S
Y
S
G
G
T
I
DMNGALNEEGTKAKNLPLIN
S
S
G
A
F
AIGNSNN
V
T
I
K
N
V
T
F
K
DSYQGHA
I
Q
I
A
GSKN
V
L
V
D
N
S
R
F
L
G
Q
A
L
P
KTMK
D
G
Q
I
I
S
KES
I
Q
I
E
P
LTRKGFPYALNDDG
K
K
S
E
NVTIQN
S
Y
F
G
K
S
DKSGELVTA
I
G
T
H
Y
QTLSTQNPSN
I
K
I
L
NNHF
D
N
M
M
Y
A
G
V
R
F
T
--
G
F
T
D
V
L
I
K
-
G
N
R
F
D
K
--
K
V
K
G
E
S
V
H
Y
----
R
E
S
G
A
---
A
L
V
N
A
Y
S
----
Y
K
-
N
T
K
--
D
L
L
D
L
---------------
N
K
Q
V
V
I
-
A
E
N
I
F
----
N
I
A
D
-
P
K
T
K
A
I
R
V
---------
A
K
----------------
D
S
A
E
Y
L
G
K
V
S
D
I
T
V
T
--
K
N
-
V
I
N
N
N
S------
K
-
E
T
E
Q
P
N
I
E
L
L
R
V
S
D
N
L
V
V
S
E
N
S
I
-
F
G
-
G
K
E
G
I
V
I
E
D
S
K
G
----------
K
I
T
--
V
L
----------------
N
N
Q
----
F
Y
N
L
S
G
-
K
Y
I
S
F
I
K
S
N
A
N
G
K
E
P
VISD
G
N
F
N
I
V
T
E
NG
L
Y
K
I
V
T
N
NLSDKN------
55
Fugue
65.36
17%
55
* C19 *
1EIO
1
FABP6_PIG
A:
[1-127]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
F
T
-
G
K
Y
E
I
----
E
S
E
K
----------
N
----
Y
D
-
E
F
M
K
R
L
A
L
P
S
---------------
D
A
I
D
K
A
-
R
N
L
------
K
I
I
S
-
E
V
K
Q
D
-
G
Q
---------
N
F
T
--------
W
S
Q
Q
Y
-
P
G
G
H
S
I
T
N
T
F
T
I
G
K
E
C
--
D
I
-
E
T
--
I
-------
G
-
G
K
K
F
K
A
T
V
Q
M
E
G
-
G
K
V
V
V
N
S
P
---------
N
Y
H
H
T
A
E
I
V
----------
D
---------------------
G
K
L
V
----
E
V
S
T
V
G
---
G
V
S
Y
E
R
V
S
K
K
L
A----------------------------------
53
Fugue
63.91
17%
37
- C19 -
4E1S
14
EAE_ECO57
A:
[1-242]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Q
H
Y
G
T
A
E
V
N
L
Q
S
GNNF
D
G
S
S
L
D
F
L
L
P
F
Y
D
S
--
E
K
M
L
A
F
G
Q
V
G
A
R
Y
I
D
--
S
R
F
T
A
N
L
G
A
----
G
Q
R
F
F
L
PA
N
M
L
G
Y
N
V
----
F
I
-
D
Q
D
F
S
G
---------------------
D
N
T
R
-
L
G
I
G
G
----
E
Y
W
R
-
D
Y
F
K
S
S
V
N
---------
G
Y
F
R
MSGWHES
Y
N
K
K
D
-
Y
D
E
R
P
A
N
G
F
D
I
R
F
N
G
Y
LP
S
Y
-
P
A
L
G
A
-------
K
-
L
I
Y
E
Q
Y
Y
G
-----
D
N
V
A
L
F
N
S
D
K
-
L
Q
-
S
N
P
G
A
A
T
V
G
V
N
Y
----------
T
P
I
PL
V
T
M
----------
G
I
D
Y
R
H
G
T
----
G
N
E
N
D
L
-
L
Y
S
M
Q
F
R
Y
Q
F
D
K
S
W
S
Q
Q
I
EPQY
V
N
E
L
R
TLSGSRYDLVQRNN
N
I
I
L
E
Y
K
50
Fugue
63.20
16%
18
- C18 -
3Q93
7
8ODP_HUMAN
A:
[23-176]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
S
R
L
Y
T
L
V
L
V
LQ
P
Q
R
V
L
L
G
M
K
K
R
G
F
G
A
--
G
R
W
N
G
----------
F
G
G
---
K
V
Q
E
G
E
T
------------------------------------
I
E
-
D
G
A
R
R
----
E
L
Q
E
-
E
S
G
L
T
V
D
A
--------------------
L
H
K
V
G
-
Q
I
V
F
E
F
V
G
E
P
E
L
M
D
V
H
--
V
F
-
C
T
D
S
I
-------
Q
G
T
P
V
E
S
D
E
M
R
P
C
W
F
Q
L
D
Q
I
P
F
K
D
M
W
P
D
-
D
S
Y
W
F
P
L
L
L
Q
K
K
----------
K
F
H
--
G
Y
F
----------
K
F
Q
G
Q
D
T
I
----
L
D
Y
T
L
R
-
E
V
D
T
V
-------------------------------------------
59
Fugue
61.11
17%
16
- C18 -
2RK5
-
?
A:
[3-88]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
--------
S
R
E
I
A
-
D
N
T
Y
I
V
L
G
T
M
T
L
N
D
F
N
--
E
Y
F
E
T
D
L
E
-------
S
-
D
N
V
D
T
I
A
G
F
Y
L
T
G
V
G
T
I
P
----
S
-
Q
E
-
E
K
E
H
F
E
V
E
S
N
G
K
----------
H
L
E
--
L
I
N
----------
D
K
V
K
D
G
R
V
----
T
K
L
K
I
L
-
V
S
----------------------------------------------
3
PsiBlast_PDB
58.49
32%
38
- C17 -
2IPI
1
AKNOX_STRGJ
A:
[273-328]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
A
W
H
Q
----
S
N
S
A
A
---
G
T
P
Y
A
S
M
H
S
V
F
Y
L
-
N
S
R
A
A
G
Q
I
L
L
---------------
D
I
Q
I
D
G
-
G
L
D
G
A
----
E
A
L
L
-
N
D
F
V
A
A
V
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
52.32
41%
43
* C21 *
1P5U
-
CAF1_YERPE
B:
[78-118]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
G
N
N
----
H
Q
F
T
T
K
V
I
G
K
D
S
R
---------------
D
F
D
I
S
P
-
K
V
N
G
E
----
N
L
V
G
-
D
D
V
V
L
A
T
G
---------
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
51.88
41%
49
- C21 -
4B0M
-
CAF1_YERPE
B:
[78-118]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
G
N
N
----
H
Q
F
T
T
K
V
I
G
K
D
S
R
---------------
D
F
D
I
S
P
-
K
V
N
G
E
----
N
L
V
G
-
D
D
V
V
L
A
T
G
---------
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------