@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0306: (2016-03-14 )
MQHQEQEKNQAFFNEQKEKVTLYLKHNIPDFKTVTFTNEEFNPIGISIDGYINNDKNLSFTAGKDVKIFSCSDELDKMFKEPRKGYDEIIEKEETSLEMPKEKTKTINEILSDLKSYEDQIITQNKI
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20.......-.30.------------------.......40.........-50----------....----.....--60-.-------------.....----..70.------.......80..-......90--------.--......------.100.......110.......120.....-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQ
H
Q
E
Q
E
K
N
Q
A
F
F
N
EQK
E
K
V
T
L
Y
L
KHNI-PD
F
K
------------------
T
V
T
FTNEE-FN
P
I
G
I
S
I
D
-
G
-----------
Y
INN----DK
N
L
S
--
F
T-A-------------GK
D
V
K
----
I
F
SC
S
------
D
E
L
D
K
M
F
K
E
P
R-
K
G
Y
D
E
I
I
E
--------
K
--
E
E
TSLE------MP
K
E
K
T
K
T
I
N
E
I
L
S
D
L
K
S
Y
E
D
Q
IITQNKI-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
Fugue
94.74
87%
-95
- C7 -
2K3D
-
?
A:
[12-98]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
F
F
N
E
Q
K
E
K
V
T
L
Y
L
K
H
N
I
-
P
D
F
N
------------------
T
V
T
F
T
N
E
E
-
F
N
P
I
G
I
S
I
D
-
G
-----------
Y
I
N
N
----
D
K
N
L
S
--
F
T
-
A
-------------
G
K
D
V
K
----
I
F
S
S
S
------
E
E
L
D
K
M
F
Q
E
P
R
-
K
G
Y
D
E
I
L
E
--------
H
--
H
H
H
H
H
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
92.15
93%
-100
- C7 -
2K3D
-
?
A:
[12-93]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
F
F
N
E
Q
K
E
K
V
T
L
Y
L
K
H
N
I
-
P
D
F
N
------------------
T
V
T
F
T
N
E
E
-
F
N
P
I
G
I
S
I
D
-
G
-----------
Y
I
N
N
----
D
K
N
L
S
--
F
T
-
A
-------------
G
K
D
V
K
----
I
F
S
S
S
------
E
E
L
D
K
M
F
Q
E
P
R
-
K
G
Y
D
E
I
L
E
--------
H
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
91.80
93%
-103
- C7 -
2K3D
-
?
A:
[12-92]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
F
F
N
E
Q
K
E
K
V
T
L
Y
L
K
H
N
I
-
P
D
F
N
------------------
T
V
T
F
T
N
E
E
-
F
N
P
I
G
I
S
I
D
-
G
-----------
Y
I
N
N
----
D
K
N
L
S
--
F
T
-
A
-------------
G
K
D
V
K
----
I
F
S
S
S
------
E
E
L
D
K
M
F
Q
E
P
R
-
K
G
Y
D
E
I
L
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
49.42
34%
1
- C4 -
1XXQ
-
?
A:
[71-137]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
E
-
P
S
F
K
------------------
T
V
K
I
T
L
D
F
-
P
N
E
F
L
V
S
V
S
-
G
-----------
Y
T
G
V
----
L
A
R
L
A
-----
T
-------------
G
K
D
V
-----
I
R
S
L
T
------------
F
K
T
N
K
-
K
T
Y
G
P
Y
G
K
--------
E
--
E
G
T
P
F
S
------
L
P
I
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
PsiBlast_CBE
49.27
34%
0
- C4 -
1XXR
1
?
C:
[71-137]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
E
-
P
S
F
K
------------------
T
V
K
I
T
L
D
F
-
P
N
E
F
L
V
S
V
S
-
G
-----------
Y
T
G
V
----
L
A
R
L
A
-----
T
-------------
G
K
D
V
-----
I
R
S
L
T
------------
F
K
T
N
K
-
K
T
Y
G
P
Y
G
K
--------
E
--
E
G
T
P
F
S
------
L
P
I
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
45
Fugue
49.25
19%
-32
* C5 *
1Y96
-
GEMI7_HUMAN
B:
[47-131]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AQES
L
E
S
Q
E
Q
R
A
R
A
A
L
R
E
R
Y
L
R
S
L
L
A
M
V
G
H
-------------------------
Q
V
S
F
T
L
H
E
-
G
V
R
V
A
A
H
F
G
-
A
-----------
T
D
L
D
----
V
A
N
F
Y
--
V
S
---------------------------------------------------------------------
Q
L
Q
------
T
P
I
G
V
Q
A
E
A
L
L
R
C
S
D
I
I
S
Y
T
F
K
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
PsiBlast_CBE
48.88
34%
2
- C4 -
1XXQ
1
?
C:
[71-137]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
E
-
P
S
F
K
------------------
T
V
K
I
T
L
D
F
-
P
N
E
F
L
V
S
V
S
-
G
-----------
Y
T
G
V
----
L
A
R
L
A
-----
T
-------------
G
K
D
V
-----
I
R
S
L
T
------------
F
K
T
N
K
-
K
T
Y
G
P
Y
G
K
--------
E
--
E
G
T
P
F
S
------
L
P
I
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
PsiBlast_CBE
48.87
34%
-3
* C4 *
1XXQ
1
?
B:
[71-137]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
E
-
P
S
F
K
------------------
T
V
K
I
T
L
D
F
-
P
N
E
F
L
V
S
V
S
-
G
-----------
Y
T
G
V
----
L
A
R
L
A
-----
T
-------------
G
K
D
V
-----
I
R
S
L
T
------------
F
K
T
N
K
-
K
T
Y
G
P
Y
G
K
--------
E
--
E
G
T
P
F
S
------
L
P
I
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
48.84
34%
2
- C4 -
1XXR
1
?
A:
[71-137]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
E
-
P
S
F
K
------------------
T
V
K
I
T
L
D
F
-
P
N
E
F
L
V
S
V
S
-
G
-----------
Y
T
G
V
----
L
A
R
L
A
-----
T
-------------
G
K
D
V
-----
I
R
S
L
T
------------
F
K
T
N
K
-
K
T
Y
G
P
Y
G
K
--------
E
--
E
G
T
P
F
S
------
L
P
I
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
PsiBlast_CBE
48.34
34%
-3
- C4 -
1XXR
1
?
B:
[71-137]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
E
-
P
S
F
K
------------------
T
V
K
I
T
L
D
F
-
P
N
E
F
L
V
S
V
S
-
G
-----------
Y
T
G
V
----
L
A
R
L
A
-----
T
-------------
G
K
D
V
-----
I
R
S
L
T
------------
F
K
T
N
K
-
K
T
Y
G
P
Y
G
K
--------
E
--
E
G
T
P
F
S
------
L
P
I
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
47.46
29%
11
- C7 -
3TQ6
2
TFAM_HUMAN
A:
[116-163]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
R
P
R
-
S
A
Y
N
V
Y
V
A
--------
E
RF
Q
E
A
K
G
D
------
S
P
Q
E
K
L
K
T
V
K
E
N
W
K
N
L
S
D
S
E
K
E
L
Y
I
Q
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
PsiBlast_CBE
47.43
34%
-1
- C4 -
1XXR
1
?
D:
[71-137]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
E
-
P
S
F
K
------------------
T
V
K
I
T
L
D
F
-
P
N
E
F
L
V
S
V
S
-
G
-----------
Y
T
G
V
----
L
A
R
L
A
-----
T
-------------
G
K
D
V
-----
I
R
S
L
T
------------
F
K
T
N
K
-
K
T
Y
G
P
Y
G
K
--------
E
--
E
G
T
P
F
S
------
L
P
I
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
Fugue
45.77
12%
-27
- C5 -
2W8M
-
?
A:
[19-207]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------I
L
P
T
V
G
L
G
R
E
Y
L
V
L
G
K
L
L
I
S
L
S
K
W
R
A
K
G
L
-
I
D
F
D
V
Y
LYEYYKGLEDKYD
L
T
L
Y
I
R
A
K
D
S
Y
-
Y
P
L
L
W
I
D
I
T
-
G
S
SWTEEQG
E
S
I
Y
A
I
L
----
S
V
K
V
E
--
T
A
-
K
-------------
K
Y
D
V
L
GR
V
F
F
I
H
Y
N
------
D
T
E
D
K
L
K
C
I
S
A
-
L
Q
I
L
N
L
E
R
--------
Q
--
N
K
I
K
K
D
KS
E
Y
Y
L
I
P
T
S
Y
W
K
N
L
T
E
L
R
I
A
L
R
G
F
Y
Q
S
F
K
E
Y
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
45.76
29%
26
- C7 -
4NOD
2
TFAM_HUMAN
A:
[149-196]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
R
P
R
-
S
A
Y
N
V
Y
V
A
--------
E
RF
Q
E
A
K
G
D
------
S
P
Q
E
K
L
K
T
V
K
E
N
W
K
N
L
S
D
S
E
K
E
L
Y
I
Q
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
41
Fugue
45.65
20%
17
* C6 *
2LZ0
-
?
A:
[1-100]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
H
E
G
E
P
V
V
G
M
D
K
S
L
-
F
A
G
N
------------------
T
V
I
R
E
I
T
V
-
Q
P
N
I
G
L
L
Y
D
-
G
-----------
M
F
S
G
----
C
T
A
L
E
K
L
I
L
-
T
-------------
G
E
D
P
S
----
A
Y
S
A
G
------
D
G
L
-------
R
-
D
G
A
D
F
L
I
C
--------
V
--
P
E
E
A
L
D
------
R
Y
R
R
D
--------
Y
F
W
Q
T
Y
A
A
W
I
Q
P
M
E
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
44.45
29%
17
- C7 -
4NNU
2
TFAM_HUMAN
A:
[149-196]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
R
P
R
-
S
A
Y
N
V
Y
V
A
--------
E
R
F
Q
E
A
K
G
D
------
S
P
Q
E
K
L
K
T
V
K
E
N
W
K
N
L
S
D
S
E
K
E
L
Y
I
Q
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
42
Fugue
43.80
16%
30
- C3 -
4NL4
3
?
H:
[18-747]
SVAHVALPVPLPRTFDYLLPEGMAVKAGCRVRVPFGKQERIGIVAAVSERSELPLDELKPVAEALDDEPVFSTTVWRLLMWAAEYYHHPIGDVLFHALPVMLRQGKPASATPLWYWFATEQGQVVDLNGLKRSRKQQQALAALRQGKIWRHQVGELEFNEAALQALRGKGLAELACEATDWRSAYSVAGERLRLNTEQATAVGAIHSAADRFSAWLLAGITGSGKTEVYLSVLENVLAQGRQALVMVPEIGLTPQTIARFRQRFNAPVEVLHSGLNDSERLSAWLKAKNGEAAIVIGTRSSLFTPFKDLGVIVIDEEHDSSYKQQEGWRYHARDLAVWRAHSEQIPIILGSATPALETLHNVRQGKYRQLTLSKPA
Q
Q
H
V
L
D
L
K
G
Q
P
L
Q
A
G
L
S
P
A
L
I
S
R
M
R
Q
H
L
Q
A
D
N
Q
------------------
V
I
L
F
L
N
R
R
G
F
A
P
A
L
L
C
H
D
C
G
-----------
W
I
A
E
CPRC
D
S
Y
Y
T
--
L
H
Q
A
-------------
Q
H
H
L
R
----
C
H
H
C
D
------
S
Q
R
P
I
P
R
Q
C
P
S
-
C
G
S
T
H
L
V
P
VGIGTEQL
E
--
Q
A
L
A
P
L
------
F
P
E
V
P
I
S
R
I
D
R
H
L
A
A
V
H
R
G
G
A
R
I
L
I
G
T
Q
M
LAKGHHFPDVTLVSLLDVDGALFSADFRSAERFAQLYTQVSGRAGRAGKQGEVILQTHHPEHPLLQTLLYKGYDAFAEQALAERQTMQLPPWTSHVLIRAEDHNNQQAPLFLQQLRNLLQASPLADEKLWVLGPVPALRWQILLQHPSRVRLQHIVSGTLALINTLPEAWVLDVDPIEG
20
PsiBlast_PDB
42.72
29%
18
- C7 -
3FGH
3
A:
[4-51]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
R
P
R
-
S
A
Y
N
V
Y
V
A
--------
E
R
F
Q
E
A
K
G
D
------
S
P
Q
E
K
L
K
T
V
K
E
N
W
K
N
L
S
D
S
E
K
E
L
Y
I
Q
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
42.65
29%
27
- C7 -
3TMM
-
TFAM_HUMAN
A:
[114-161]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
R
P
R
-
S
A
Y
N
V
Y
V
A
--------
E
R
F
Q
E
A
K
G
D
------
S
P
Q
E
K
L
K
T
V
K
E
N
W
K
N
L
S
D
S
E
K
E
L
Y
I
Q
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
Fugue
41.41
12%
37
- C6 -
3FVW
-
?
A:
[3-184]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------K
R
I
L
F
I
V
GSFSEGS
F
N
R
Q
L
A
K
K
A
E
T
I
I
GDR
A
Q
V
S
Y
L
S
Y
D
R
V
P
F
F
N
Q
D
L
E
T
S
V
H
P
E
V
A
H
A
R
E
E
V
-
Q
E
A
D
------------------
A
I
W
I
F
S
P
V
-
Y
N
Y
---
A
I
P
-
G
-----------
P
V
K
N
----
L
L
D
W
L
--
S
R
-
S
LDLSDPTGPSVLQ
D
K
I
V
T
----
V
S
S
V
A
N
G
AEVF
E
D
Y
R
S
L
L
P
F
I
R
M
H
L
V
D
Q
L
T
G
--------
V
--
P
I
N
S
E
A
------
W
S
T
G
I
L
K
V
S
A
E
K
L
A
E
L
S
A
Q
A
D
A
L
L
S
A
I
E
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------