@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0325: (2016-03-14 )
MGSYGELIREIRLSKGLTQKEVYTGIISRSYAIGFEKGKHEITLSLFEEILKRIMVPLDEFFFIYRDFSSTEDDSFWIDFVELSGKNDVVGMQALLDKITLERTEQSEVRKAILHTRIQTINHYLRTNVFDESNISDEYKKIIHDYLWKMQTWTLEEVRIFSNGISFFEEEVQIHFYQIMLKSYEKYRYYDRGRLLFCHLFANLTDELIIQNKINYANLVLEKLKEASETSGSFNSAFYRIVANYYQGAIWMKEGEVEKGYRQAKRAIQTWKELHYEAIADLYSVVLKQFLEKENIQVED
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20.-....-...30.......-.40........50........60........70........80........90........100-.---..--....110.......120.......130.......140......----.150.......160......----.170.......180.......190....--...200.......210.......220.......230....---...240.......250....-.-..260.......270.......280.......290.......300-------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MG
S
Y
G
E
L
I
R
E
I
R
LSKGL
T
Q
K
E
V
-
Y
T
G
I
-ISR
S
Y
A
IGFEKG-K
H
E
I
T
L
S
L
F
E
E
I
L
K
R
I
MV
P
L
D
E
F
F
F
I
Y
RDFSSTEDD
S
F
W
I
D
F
V
E
LSGKND
V
V
G
M
Q
A
L
L
D
K
I
T
LE-R---T
E
--
Q
S
E
V
R
K
A
I
L
H
T
R
I
Q
T
I
N
H
Y
L
R
TNVFDESN
I
S
D
E
Y
K
K
I
I
H
D
Y
L
W
----KMQTW
T
L
E
E
V
R
I
F
S
N
G
I
S
F
F
----
E
E
E
V
Q
I
H
F
Y
Q
I
M
L
K
S
Y
E
K
YRYYDR
G
R
L
L
--
F
C
H
L
F
A
N
L
T
D
E
L
I
I
QNKI
N
Y
A
N
L
V
L
E
K
L
K
E
A
SETSGS
F
N
S
---
A
F
Y
R
I
V
A
N
Y
YQ
G
A
I
W
M
KEG
E
-
V
-
E
K
G
Y
R
Q
A
K
R
A
I
Q
T
W
K
E
L
H
Y
E
A
I
A
D
L
Y
S
V
V
L
K
Q
F
L
E
KENIQVED---------------------------------------------
73
Fugue
79.95
18%
-72
* C2 *
4UZY
2
?
A:
[9-650]
QQPA
R
P
I
A
EGQ
Y
T
Q
T
I
Y
T
L
I
K
E
QK
F
A
E
A
I
Q
H
L
Q
Y
Q
L
Q
N
V
P
ES
R
A
A
L
S
L
L
G
Y
C
Y
Y
Y
T
GQ
Y
D
M
A
S
Q
M
Y
E
Q
L
V
T
L
Y
P
SN
E
D
Y
K
L
Y
Y
A
Q
S
L
Y
K
G
GM
Y
P
E
A
S
K
A
V
V
K
VEGH
Q
K
A
V
T
T
L
L
V
A
C
S
Y
E
Q
DD
L
T
G
C
R
R
Q
L
D
K
CAPED
P
D
T
M
V
N
T
G
C
I
M
F
K
E
GK
F
E
A
A
R
Q
K
F
N
DYQ
P
E
L
L
Y
N
I
A
L
C
Y
Y
K
TKQ
F
G
P
A
L
K
H
L
A
E
I
I
E
K
A
V
R
E
HPELSVGSDGMEVRSVGNS
Q
T
L
K
E
T
A
L
I
E
A
F
N
L
K
A
A
I
E
Y
T
M
KN
V
E
A
A
K
E
A
L
T
D
MPPRAEEELD
P
V
T
L
H
N
S
A
L
I
N
M
DSD
P
T
G
G
F
K
K
L
N
F
L
L
Q
S
PPFPPE
T
F
A
N
L
L
L
L
Y
C
KPS
H
G
F
Y
D
L
A
A
D
V
L
A
E
N
P
Q
Y
A
G
K
L
L
-
S
P
D
L
-
Y
D
Y
L
Q
A
A
I
G
R
Y
K
-
S
P
E
E
A
F
R
R
F
D
E
L
A
T
R
H
V
E
Q
L
R
R
L
T
K
Q
I
Q
D
A
R
I
A
R
D
----------------------
N
D
A
I
K
R
A
-
I
---
N
E
--
Y
D
E
A
L
E
A
Y
I
P
G
L
M
A
M
A
S
I
Y
W
D
M
E
L
--
Y
S
N
V
E
K
I
F
R
Q
S
-
A
E
F
C
S
----
E
H
E
V
W
K
L
N
V
A
H
T
F
F
M
Q
D
-------------
N
H
Y
K
E
A
I
R
Y
Y
E
P
V
V
K
K
N
A
D
N
L
L
GV
T
A
I
V
L
A
N
L
C
V
S
Y
I
M
T
S
Q
N
E
E
A
E
E
L
M
R
K
V
E
K
E
E
E
R
S
S
M
Q
D
P
DKP
C
F
H
L
C
I
I
N
L
V
I
G
T
L
Y
C
A
K
G
N
-
Y
-
E
F
G
V
S
R
I
I
K
S
L
E
E
T
D
T
W
Y
Y
---
A
K
R
C
F
L
A
L
I
E
N
L
A
K
H
M
I
V
L
K
D
S
S
F
T
E
I
M
A
F
L
N
E
A
E
K
H
G
K
D
I
R
V
V
F
NQSRT
I
A
S
E
A
R
M
L
K
K
M
F
L
K
L
R
45
HHSearch
72.85
14%
-84
- C3 -
3U3W
4
?
A:
[3-282]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
K
L
G
S
E
I
K
K
I
R
V
L
R
G
L
T
Q
K
Q
L
-
S
E
N
I
-
C
H
Q
S
E
V
S
R
I
E
S
G
-
A
V
Y
P
S
M
D
I
L
Q
G
I
A
A
K
L
Q
I
P
I
I
H
F
Y
E
V
L
I
Y
S
D
I
E
R
K
K
Q
F
K
D
Q
V
I
M
L
C
K
Q
K
R
Y
K
E
I
Y
N
K
V
W
N
E
L
K
K
E
E
YH
P
E
F
Q
Q
F
L
Q
W
Q
Y
Y
V
A
A
Y
V
L
---------
K
--
K
V
--
D
Y
E
Y
C
I
L
E
L
K
K
L
L
N
QQLT
G
I
D
V
Y
Q
--
N
L
Y
I
E
N
A
I
A
N
I
Y
A
E
N
G
Y
L
K
K
G
I
D
L
F
E
Q
I
L
K
Q
L
E
A
L
H
---
D
N
E
E
F
--
D
V
K
V
R
Y
N
H
A
K
A
L
Y
L
D
S
R
Y
E
E
S
L
Y
Q
V
N
K
A
I
E
I
S
---
C
R
I
N
S
---
M
A
L
I
G
Q
L
Y
Y
Q
R
G
E
C
L
R
K
L
E
Y
-
E
E
A
E
I
E
D
A
Y
K
K
A
S
F
F
F
D
I
L
E
M
H
A
Y
K
E
A
L
V
N
K
-----------------------------------------------------------
63
HHSearch
71.40
17%
-88
- C3 -
3QQ6
-
SINR_BACSU
A:
[-1-65]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
M
I
G
Q
R
I
K
Q
Y
R
K
E
K
G
Y
S
L
S
E
L
-
A
E
K
A
G
V
A
K
S
Y
L
S
S
I
E
R
N
L
Q
T
N
P
S
I
Q
F
L
E
K
V
S
A
V
L
D
V
S
V
H
T
L
L
D
E
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
72
Fugue
65.46
12%
-66
- C1 -
2QFC
4
?
A:
[3-286]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
K
L
G
S
E
I
K
K
I
R
V
L
R
G
L
T
Q
K
Q
L
-
S
E
N
I
-
C
H
Q
S
E
V
S
R
I
E
S
G
-
A
V
Y
P
S
M
D
I
L
Q
G
I
A
A
K
L
Q
I
P
I
I
H
F
Y
E
V
L
I
Y
S
D
I
E
R
K
K
Q
F
K
D
Q
V
I
M
L
C
K
Q
K
R
Y
K
E
I
Y
N
K
V
W
N
E
L
K
K
-
E
---
E
Y
--
H
P
E
F
Q
Q
F
L
Q
W
Q
Y
Y
V
A
A
Y
V
L
K
K
V
D
Y
E
Y
C
I
L
E
L
K
K
L
L
N
Q
Q
L
--------
T
G
I
D
V
Y
Q
N
L
Y
I
E
N
A
I
A
N
I
Y
A
----
E
N
G
Y
L
K
K
G
I
D
L
F
E
Q
I
L
K
Q
L
E
A
L
H
D
N
E
E
F
--
D
V
K
V
R
Y
N
H
A
K
A
L
Y
L
D
S
R
---
Y
E
E
S
L
Y
Q
V
N
K
A
I
E
I
S
C
R
I
N
S
---
M
A
L
I
G
Q
L
Y
Y
Q
R
G
E
C
L
R
K
L
E
Y
E
E
-
A
E
I
E
D
A
Y
K
K
A
S
F
F
F
D
I
L
E
M
H
A
Y
K
E
A
L
V
N
K
I
S
R
L
-------------------------------------------------------
69
Fugue
62.44
27%
-70
* C3 *
1Y7Y
-
?
A:
[5-73]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HDHYAD
L
V
K
F
G
Q
R
L
R
E
L
R
T
A
K
G
L
S
Q
E
T
L
-
A
F
L
S
G
L
D
R
S
Y
V
G
G
V
E
R
G
-
Q
R
N
V
S
L
V
N
I
L
K
L
A
T
A
L
D
I
E
P
R
E
L
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
57
HHSearch
62.18
26%
-92
- C3 -
2B5A
1
?
A:
[9-74]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
K
F
G
R
T
L
K
K
I
R
T
Q
K
G
V
S
Q
E
E
L
-
A
D
L
A
G
L
H
R
T
Y
I
S
E
V
E
R
G
-
D
R
N
I
S
L
I
N
I
H
K
I
C
A
A
L
D
I
P
A
S
T
F
F
R
K
M
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
PsiBlast_CBE
61.42
36%
-84
- C3 -
4IWR
2
?
E:
[15-71]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
I
K
K
I
R
L
E
K
G
M
T
Q
E
D
L
A
Y
K
S
N
-
L
D
R
T
Y
I
S
G
I
E
R
N
-
S
R
N
L
T
I
K
S
L
E
L
I
M
K
G
L
E
V
S
-
D
V
V
F
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
60.95
36%
-88
- C3 -
4I6T
1
?
A:
[15-71]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
I
K
K
I
R
L
E
K
G
M
T
Q
E
D
L
A
Y
K
S
N
-
L
D
R
A
Y
I
S
G
I
E
R
N
-
S
R
N
L
T
I
K
S
L
E
L
I
M
K
G
L
E
V
S
-
D
V
V
F
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
PsiBlast_CBE
60.76
36%
-80
- C3 -
4X4B
1
?
D:
[15-71]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
I
K
K
I
R
L
E
K
G
M
T
Q
E
D
L
A
Y
K
S
N
-
L
D
R
T
Y
I
S
G
I
E
R
N
-
S
R
N
L
T
I
K
S
L
E
L
I
M
K
G
L
E
V
S
-
D
V
V
F
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
PsiBlast_CBE
60.70
36%
-80
- C3 -
4FBI
1
?
B:
[15-71]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
I
K
K
I
R
L
E
K
G
M
T
Q
E
D
L
A
Y
K
S
N
-
L
D
R
T
Y
I
S
G
I
E
R
N
-
S
A
N
L
T
I
K
S
L
E
L
I
M
K
G
L
E
V
S
-
D
V
V
F
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
PsiBlast_CBE
60.34
36%
-80
- C3 -
4FBI
1
?
D:
[15-71]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
I
K
K
I
R
L
E
K
G
M
T
Q
E
D
L
A
Y
K
S
N
-
L
D
R
T
Y
I
S
G
I
E
R
N
-
S
A
N
L
T
I
K
S
L
E
L
I
M
K
G
L
E
V
S
-
D
V
V
F
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
60.08
36%
-75
- C3 -
3CLC
-
?
A:
[15-71]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
I
K
K
I
R
L
E
K
G
M
T
Q
E
D
L
A
Y
K
S
N
-
L
D
R
T
Y
I
S
G
I
E
R
N
-
S
R
N
L
T
I
K
S
L
E
L
I
M
K
G
L
E
V
S
-
D
V
V
F
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
59.99
36%
-76
- C3 -
4IWR
2
?
A:
[15-71]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
I
K
K
I
R
L
E
K
G
M
T
Q
E
D
L
A
Y
K
S
N
-
L
D
R
T
Y
I
S
G
I
E
R
N
-
S
R
N
L
T
I
K
S
L
E
L
I
M
K
G
L
E
V
S
-
D
V
V
F
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
42
PsiBlast_CBE
59.87
34%
-90
- C3 -
4I6U
5
?
A:
[15-71]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
I
K
K
I
R
L
E
K
G
M
T
Q
E
D
L
A
Y
K
S
N
-
L
D
R
T
F
I
S
G
I
E
R
N
-
S
R
N
L
T
I
K
S
L
E
L
I
M
K
G
L
E
V
S
-
D
V
V
F
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
PsiBlast_CBE
59.58
36%
-83
- C3 -
4F8D
4
?
B:
[15-71]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
I
K
K
I
R
L
E
K
G
M
T
Q
E
D
L
A
Y
K
S
N
-
L
D
R
T
Y
I
S
G
I
E
R
N
-
S
A
N
L
T
I
K
S
L
E
L
I
M
K
G
L
E
V
S
-
D
V
V
F
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
59.54
36%
-85
- C3 -
4I8T
2
?
A:
[15-71]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
I
K
K
I
R
L
E
K
G
M
T
Q
E
D
L
A
Y
K
S
N
-
L
D
R
T
Y
I
S
G
I
E
R
N
-
S
R
N
L
T
I
K
S
L
E
L
I
M
K
G
L
E
V
S
-
D
V
V
F
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
59.53
36%
-72
- C3 -
4X4H
-
?
A:
[15-71]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
I
K
K
I
R
L
E
K
G
M
T
Q
E
D
L
A
Y
K
S
N
-
L
D
R
T
Y
I
S
G
I
E
R
N
-
S
R
N
L
T
I
K
S
L
E
L
I
M
K
G
L
E
V
S
-
D
V
V
F
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
59.53
36%
-72
- C3 -
4X4D
-
?
A:
[15-71]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
I
K
K
I
R
L
E
K
G
M
T
Q
E
D
L
A
Y
K
S
N
-
L
D
R
T
Y
I
S
G
I
E
R
N
-
S
R
N
L
T
I
K
S
L
E
L
I
M
K
G
L
E
V
S
-
D
V
V
F
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
59.53
36%
-72
- C3 -
4X4C
-
?
A:
[15-71]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
I
K
K
I
R
L
E
K
G
M
T
Q
E
D
L
A
Y
K
S
N
-
L
D
R
T
Y
I
S
G
I
E
R
N
-
S
R
N
L
T
I
K
S
L
E
L
I
M
K
G
L
E
V
S
-
D
V
V
F
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
59.52
36%
-72
- C3 -
4X4G
-
?
A:
[15-71]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
I
K
K
I
R
L
E
K
G
M
T
Q
E
D
L
A
Y
K
S
N
-
L
D
R
T
Y
I
S
G
I
E
R
N
-
S
R
N
L
T
I
K
S
L
E
L
I
M
K
G
L
E
V
S
-
D
V
V
F
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------