@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0395: (2016-03-15 )
MQYKIKEMPLEELEPKVVEGLLEHKERLGYNIPKKDTEYIGFAALSEVGEMVGGVTAKISYGELHVSLLSVDPSTQGSGVGTELMAQIERYGRANSCHHISLTTFSYQAPEFYRKCGFTELGRVKDFPIKGEEKYFFIKYL
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------..-.......10....---....------20-..---.---.----------.-----.----.----.-30.---..--------..-....40......-..50...---..----...60-----.------------------........-70........80........90........100--..----.---------------------------..--.--.110.......120-------.........130--........140------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------MQ-YKIKEM
P
L
E
EL
E
P
---
K
V
V
E
------
G
L
-
L
E
---
H
---
K
----------
E
-----
R
----L----G-Y-N---IP--------KK-D
T
E
Y
I
G
F
A
A
L
S
E
-
V
G
E
M
VGG---
V
T
----
A
K
I
S
------Y------------------
G
E
L
H
V
S
L
L
-SVDPSTQGSG
V
G
T
E
L
M
A
Q
I
E
RYGRAN
S
C
H
H
I
S
L
--
T
T
----F---------------------------SY--Q--
A
P
E
F
Y
R
KCGFTE---------LGRVKDFPIKG---E
E
K
Y
F
F
I
K
YL-------------
1
PsiBlast_PDB
85.37
39%
-101
- C1 -
1Y9W
-
?
A:
[34-140]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
Q
-
P
M
E
E
V
S
L
V
V
K
N
E
-
E
G
K
I
F
G
G
---
V
T
----
G
T
M
Y
------
F
------------------
Y
H
L
H
I
D
F
L
-
W
V
D
E
S
V
R
H
D
G
Y
G
S
Q
L
L
H
E
I
E
G
I
A
K
E
K
G
C
R
L
I
L
L
--
D
S
----
F
---------------------------
S
F
--
Q
--
A
P
E
F
Y
K
K
H
G
Y
R
E
---------
Y
G
V
V
E
D
H
P
-
K
G
---
H
S
Q
H
F
F
E
K
R
L
-------------
46
HHSearch
84.68
41%
-113
- C1 -
1Y9W
-
?
A:
[40-140]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
S
L
V
V
K
N
E
-
E
G
K
I
F
G
G
---
V
T
----
G
T
M
Y
------
F
------------------
Y
H
L
H
I
D
F
L
-
W
V
D
E
S
V
R
H
D
G
Y
G
S
Q
L
L
H
E
I
E
G
I
A
K
E
K
G
C
R
L
I
L
L
--
D
S
----
F
---------------------------
S
F
--
Q
--
A
P
E
F
Y
K
K
H
G
Y
R
E
---------
Y
G
V
V
E
D
H
P
-
K
G
---
H
S
Q
H
F
F
E
K
R
L
-------------
15
PsiBlast_PDB
72.01
25%
-113
- C1 -
1YGH
1
GCN5_YEAST
A:
[36-146]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
---
Y
---
I
----------
A
-----
R
----
L
----
V
-
Y
------------------
D
R
S
H
L
S
M
A
V
I
R
K
-
P
L
T
V
V
G
G
---
I
T
Y
R
P
F
D
K
R
E
------
F
------------------
A
E
--
I
V
F
C
-
A
I
S
S
T
E
Q
V
R
G
Y
G
A
H
L
M
N
H
L
K
D
Y
V
R
N
T
S
N
I
K
Y
F
L
--
T
Y
----
A
---------------------------
D
N
--
Y
--
A
I
G
Y
F
K
K
Q
G
F
T
K
EITLDKSIW
M
G
Y
I
K
D
Y
------------------------------
55
HHSearch
70.56
24%
-118
- C1 -
1N71
1
?
A:
[45-175]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
I
A
V
A
A
-
V
D
-
Q
D
E
L
V
G
F
---
I
G
----
A
I
P
Q
YG----
I
------------------
T
G
W
E
L
H
P
L
-
V
V
E
S
S
R
R
K
N
Q
I
G
T
R
L
V
N
Y
L
E
K
E
V
A
S
R
G
G
I
T
I
Y
L
--
G
T
----
D
D
LDHGTTLSQTDLYEH
T
F
D
K
V
A
S
IQNL
R
E
--
H
--
P
Y
E
F
Y
E
K
L
G
Y
K
I
---------
V
G
V
L
P
N
A
N
G
W
D
---
K
P
D
I
W
M
A
K
T
I
-------------
58
HHSearch
68.12
21%
-72
- C1 -
3LOD
-
?
A:
[-1-151]
--------------------------------------------------------------------------------------------------------------------------------------
A
M
-
Y
T
I
T
D
I
A
P
T
D
A
E
F
---
I
A
L
I
------
A
A
L
D
A
---
W
---
Q
----------
E
-----
T
-----------
L
-
D
---
L
S
--------
Q
L
-
P
P
Q
T
V
I
A
L
A
I
R
S
P
Q
G
E
A
V
G
C
---
G
A
----
I
V
L
S
------
E
E-----------------
G
F
G
E
M
K
R
V
-
Y
I
D
P
Q
H
R
G
Q
Q
L
G
E
K
L
L
A
A
L
E
A
K
A
R
Q
R
D
C
H
T
L
R
L
--
E
T
G
I--
H
---------------------------
Q
H
--
A
--
A
I
A
L
Y
T
R
N
G
Y
Q
T
---------
R
C
A
F
A
P
Y
Q
P
-
D
---
P
L
S
V
F
M
E
K
P
L
-------------
59
HHSearch
67.17
24%
-94
- C1 -
2R7H
1
?
A:
[68-176]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
H
F
V
F
A
-
T
E
-
D
D
D
M
A
G
Y
---
A
C
----
Y
G
P
T
PAT---
E
------------------
G
T
Y
D
L
Y
W
I
-
A
V
A
P
H
R
Q
H
S
G
L
G
R
A
L
L
A
E
V
V
H
D
V
R
L
T
G
G
R
L
L
F
A
--
E
T
S
GIR
K
---------------------------
Y
A
--
P
--
T
R
R
F
Y
E
R
A
G
F
S
A
---------
E
A
V
L
K
A
F
Y
R
A
G
---
D
D
K
I
I
Y
R
L
E
V
-------------
51
HHSearch
63.06
21%
-64
- C1 -
3I9S
3
?
A:
[23-183]
---------------------------------------------------------------------------------------------------------------------------------------
S
-
V
E
I
K
R
V
D
K
H
H
C
L
D
---
L
V
G
I
------
F
I
-
E
L
E
R
Y
Y
---
F
GDKAAS----
E
-----
Q
----
D
----
L
A
N
-
Y
---
L
S
H
QVF----
S
E
-
H
S
G
V
K
V
I
A
A
-
V
E
-
H
D
K
V
L
G
F
---
A
T
----
Y
T
I
M
F
PAPKL
S
------------------
G
Q
M
Y
M
K
D
L
-
F
V
S
S
S
A
R
G
K
G
I
G
L
Q
L
M
K
H
L
A
T
I
A
I
T
H
N
C
Q
R
L
D
W
--
T
A
E
S--
T
---------------------------
N
P
--
T
--
A
G
K
F
Y
K
S
I
G
A
S
L
---------
I
R
E
K
E
Y
Y
R
F
E
G
---
N
G
L
N
K
L
A
K
S
L
-------------
61
HHSearch
61.18
19%
-66
- C1 -
2FE7
-
?
A:
[3-156]
-----------------------------------------------------------------------------------------------------------------------------------------
L
E
I
R
P
A
V
P
A
D
A
E
Q
---
I
L
A
F
------
I
I
-
E
L
A
D
-
Y
---
E
RARH------
E
VVTD
V
E
G
---
I
----
R
-
R
-
S
---
L
F
--------
A
E
G
S
P
-
T
R
A
L
M
C
-
L
S
-
E
G
R
P
I
G
Y
---
A
V
----
F
F
Y
S
Y
S
TWLG
R
------------------
N
G
I
Y
L
E
D
L
-
Y
V
T
P
E
Y
R
--
G
A
G
R
R
L
L
R
E
L
A
R
E
A
V
A
N
D
C
G
R
L
E
W
--
S
V
L
D--
W
---------------------------
N
Q
--
P
--
A
I
D
F
Y
R
S
I
G
A
L
P
---------
Q
D
E
W
V
R
Y
R
L
D
G
---
E
A
L
R
K
M
-----------------
14
PsiBlast_PDB
60.45
26%
-146
- C1 -
4E0A
2
?
A:
[89-156]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
Y
I
S
D
L
-
C
V
D
E
T
R
R
G
G
G
I
G
R
L
I
F
E
A
I
I
S
Y
G
K
A
H
Q
V
D
A
I
E
L
--
D
V
----
Y
---------------------------
D
F
N
D
R
--
A
K
A
F
Y
H
S
L
G
M
R
C
---------
Q
K
Q
T
M
E
L
P
L
----------------------------
49
HHSearch
58.82
17%
-70
- C1 -
1YX0
-
YSNE_BACSU
A:
[1-148]
--------------------------------------------------------------------------------------------------------------------------------------
M
H
-
I
K
I
D
D
L
T
G
R
Q
V
V
S
---
L
V
N
E
------
H
L
-
H
S
---
M
---
T
----------
L
-----
M
----
S
PPES
I
-
H
A
L
GLE
K
L
--------
R
G
-
P
E
-
I
T
F
W
S
A
-
W
E
-
G
D
E
L
A
G
C
---
G
A
----
L
K
E
L
D
-----
T
------------------
R
H
G
E
I
K
S
M
-
R
T
S
A
S
H
L
R
K
G
V
A
K
Q
V
L
Q
H
I
I
E
E
A
E
K
R
G
Y
E
R
L
S
L
--
E
T
G
S
MA
S
---------------------------
F
E
--
P
--
A
R
K
L
Y
E
S
F
G
F
Q
Y
---------
C
E
P
F
A
D
Y
G
E
D
P
---
N
S
V
F
M
T
-----------------
70
Fugue
58.78
20%
-81
- C1 -
1YVK
1
YVBK_BACSU
A:
[5-156]
-------------------------------------------------------------------------------------------------------------------------------------K
L
R
-
I
E
L
G
E
E
T
N
D
E
L
Y
D
---
L
L
L
L
A
DPS
K
D
I
V
-
D
E
---
Y
---
L
----------
E
-----
R
----
G
----
E
-
C
-
Y
---
T
A
--------
W
A
-
G
D
E
L
A
G
V
Y
V
L
L
K
-
T
R
P
------------------------------------------
Q
T
V
E
I
V
N
I
-
A
V
K
E
S
L
Q
K
K
G
F
G
K
Q
L
V
L
D
A
I
E
K
A
K
K
L
G
A
D
T
I
E
I
--
G
T
----
G
NS-------------------------
S
I
--
H
--
Q
L
S
L
Y
Q
K
C
G
F
R
I
---------
Q
A
I
D
H
D
F
F
L
R
H
---
Y
D
E
D
I
F
E
N
G
I
QCR
D
M
V
R
L
Y
L
D
L
L
20
PsiBlast_PDB
58.72
29%
-108
- C1 -
4PV6
1
?
C:
[51-132]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
F
M
V
Y
T
V
-
A
G
S
V
V
G
F
---
I
V
G
---
S
K
Y
S
------
R
------------------
T
E
A
R
I
L
L
F
-
A
V
D
E
R
F
R
R
M
G
V
G
S
A
L
M
D
A
F
L
S
L
C
R
E
Q
N
M
L
S
V
R
L
E
V
R
T
----
D
---------------------------
N
D
--
E
--
A
I
R
F
Y
K
K
Y
G
F
V
-----------------------------------------------
47
HHSearch
58.65
16%
-54
- C1 -
3BLN
5
?
A:
[1-141]
--------------------------------------------------------------------------------------------------------------------------------------
G
M
-
K
N
V
T
K
A
S
I
D
D
L
D
S
---
I
V
H
I
------
D
I
-
D
V
---
I
---
G
----------
N
-----
D
----
S
----
R
R
N
-
Y
---
I
K
--------
H
S
I
D
E
-
G
R
C
V
I
V
-
K
E
-
D
N
S
I
S
G
F
---
L
T
----
Y
D
T
N
F-----
F
------------------
D
C
T
F
L
S
L
I
-
I
V
S
P
T
K
R
R
R
G
Y
A
S
S
L
L
S
Y
M
L
S
H
S
P
T
Q
K
I
F
-
S
S
T
--
N
E
----
S
---------------------------
N
E
--
S
--
M
Q
K
V
F
N
A
N
G
F
I
R
---------
S
G
I
V
E
N
L
D
E
G
D
---
P
E
I
I
F
Y
T
K
K
L
-------------
71
Fugue
57.99
14%
-56
- C1 -
3IWG
3
?
A:
[5-274]
F
K
I
K
T
I
ESLSDL
T
Q
L
K
K
A
Y
F
D
S
SIVPLDGMWHFGFAPM
A
K
H
F
G
F
Y
V
NKNLV
G
F
C
C
V
N
DDGYLL
Q
Y
Y
L
QPEF
Q
L
C
S
Q
E
L
F
T
L
I
S
Q
QNSSVIGEVK
G
A
F
V
S
TAE
L
N
Y
Q
A
L
C
L
D
N
SA
T
F
K
V
N
S
L
M
Y
Q
H
N
TKLAN
L
E
M
I
D
M
Q
I
A
G
T
E
Q
L
T
A
F
V
T
---
F
A
A
A
------
N
I
-
G
A
---
P
---
E
----------
Q
-----
W
----
L
----
T
-
Q
-
Y
---
Y
G
--------
N
L
-
I
E
R
K
E
L
F
G
Y
W
H
K
--
G
K
L
L
A
A
---
G
E
----
C
R
L
F
DQ----
Y
------------------
Q
T
E
Y
A
D
L
G
M
I
V
A
Q
S
N
R
G
Q
G
I
A
K
K
V
L
T
F
L
T
K
H
A
A
T
Q
G
L
T
S
I
C
S
--
T
E
----
S
N--------------------------
N
V
--
A
--
A
Q
K
A
I
A
H
A
G
F
T
S
---------
A
H
R
I
V
Q
F
E
F
K
---------------------------
50
HHSearch
57.29
15%
-60
* C1 *
2CNT
2
?
A:
[1-144]
---------------------------------------------------------------------------------------------------------------------------------------
M
-
N
T
I
S
I
L
S
T
T
D
L
P
A
---
A
W
Q
I
------
E
Q
-
R
A
---
H
---
A
----------
F
-----
P
----
W
----
S
-
E
K
T
---
F
F
--------
G
N
Q
G
E
R
Y
L
N
L
K
L
-
T
A
-
D
D
R
M
A
A
F
---
A
I
----
T
Q
V
V
------
L
------------------
D
E
A
T
L
F
N
I
-
A
V
D
P
D
F
Q
R
R
G
L
G
R
M
L
L
E
H
L
I
D
E
L
E
T
R
G
V
V
T
L
W
L
--
E
V
R
A--
S
---------------------------
N
A
--
A
--
A
I
A
L
Y
E
S
L
G
F
N
E
---------
A
T
I
R
R
N
Y
Y
P
T
A
Q
G
H
E
D
A
I
I
M
A
L
---------------
66
Fugue
57.26
18%
-80
- C1 -
1U6M
2
?
A:
[2-189]
---------------------------------------------------------------------------------------------------------------------S
L
I
R
S
A
TKED
G
Q
A
I
A
R
L
V
L
-
V
I
L
K
D
M
E
L
P
I
L
E
E
V
S
E
E
Q
M
I
------
D
L
-
L
A
---
E
---
A
T
A
YPTYRYGY
Q
-----
R
----
I
----
L
-
V
-
Y
---
E
H
--------
A
G
-
E
V
A
G
I
A
V
G
Y
P
A
E
-
D
E
K
I
I
D
E
---
P
L
----
R
E
V
F
------
K
K
H
GLAEDVRLFIEEETLP
N
E
W
Y
L
D
T
I
-
S
V
D
E
R
F
R
G
M
G
I
G
S
K
L
L
D
A
L
P
E
V
A
K
A
S
G
K
Q
A
L
G
L
--
N
V
----
D
FD-------------------------
N
P
--
G
--
A
R
K
L
Y
A
S
K
G
F
K
D
---------
V
T
T
M
T
I
S
---
G
---
H
L
Y
N
H
M
Q
K
E
V
-------------
13
PsiBlast_PDB
56.85
26%
-140
- C1 -
4F6A
1
?
A:
[89-156]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
Y
I
S
D
L
-
C
V
D
E
T
R
R
G
G
G
I
G
R
L
I
F
E
A
I
I
S
Y
G
K
A
H
Q
V
D
A
I
E
L
--
D
V
----
Y
---------------------------
D
F
N
E
R
--
A
K
R
F
Y
H
S
L
G
M
R
C
---------
Q
K
Q
T
M
E
L
P
L
----------------------------
9
PsiBlast_PDB
56.84
30%
-106
- C1 -
3LOD
-
?
A:
[48-129]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
A
L
A
I
R
S
P
-
Q
G
E
A
V
G
C
G
A
I
V
L
----
S
E
E
G
------
F
------------------
G
E
M
--
K
R
V
-
Y
I
D
P
Q
H
R
G
Q
Q
L
G
E
K
L
L
A
A
L
E
A
K
A
R
Q
R
D
C
H
T
L
R
L
--
E
T
----
G
---------------------------
I
H
--
Q
H
A
A
I
A
L
Y
T
R
N
G
Y
------------------------------------------------
53
HHSearch
55.52
19%
-74
- C1 -
1TIQ
4
PAIA_BACSU
A:
[2-170]
---------------------------------------------------------------------------------------------------------------------------------------
S
-
V
K
M
K
K
C
S
R
E
D
L
Q
T
---
L
Q
Q
L
------
S
I
-
E
T
---
F
N
D
T
F
KEQN------
S
P
----
E
N
M
K
A
Y
----
L
-
E
-
S
A
--
F
N
T
E
Q
L
E
K
E
L
S
N
-
M
S
-
S
Q
F
F
F
I
-
Y
F
-
D
H
E
I
A
G
Y
---
V
K
----
V
N
I
D
------
D
AQSEEMGA----------
E
S
L
E
I
E
R
I
-
Y
I
K
N
S
F
Q
K
H
G
L
G
K
H
L
L
N
K
A
I
E
I
A
L
E
R
N
K
K
N
I
W
L
--
G
V
W
E--
K
---------------------------
N
E
--
N
--
A
I
A
F
Y
K
K
M
G
F
V
Q
---------
T
G
A
H
S
F
Y
M
G
D
E
E
--
Q
T
D
L
I
M
A
K
T
--------------
25
PsiBlast_CBE
55.09
32%
-122
- C1 -
1I1D
1
GNA1_YEAST
C:
[98-154]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
I
E
D
I
-
A
V
N
S
K
Y
Q
G
Q
G
L
G
K
L
L
I
D
Q
L
V
T
I
G
F
D
Y
G
C
Y
K
I
I
L
--
D
C
--------------------------------
D
E
--
K
--
N
V
K
F
Y
E
K
C
G
F
S
N
---------
A
G
-----------------------------------