@TOME V2.3
(Nov 2016)

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3D Common Core:

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Complexes Modeling
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Values color: [ Good | Correct | Middling | Bad ]Sequence color : MutatedHelixStrandConserved

Query sequence : Lmo0487: (2016-03-16 )
MTEEFVNKEDALKNYNVKEFRTPDGYTSDMILTTVKEVNGKPTLHILLIKRSSTNAEGRPNIEGGKWAVPGGFVDENESADQAAERELEEETSLTGIPLIPFGVFDKPGRDPRGWIISRAFYAIVPPEALEKRAAGDDAADIGLFSMTEALELPLAFDHLDMLKKAYSAITEEFLLTTAICDFLPETFSAELLYQTLDGCTKPGILPDEVEFMENIEYLPYLEKVGELYRFNADAEAGSIYF

Atome Classification :

(20 SA) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20........30........40........50.......------.60........70.....--...80........90..--..------.--...-------100-..------......110---.--------------.....--.120.......130..----......140.....----------..--150.-----------------------.---...-..160.......170.......180.......190.......200...---....210.......220.....------..230.......240
(Atome) (Ident) (Tito) (Num) (Ligand) (Uniprot) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MTEEFVNKEDALKNYNVKEFRTPDGYTSDMILTTVKEVNGKPTLHILLIKRSSTNAEG------RPNIEGGKWAVPGGFVDE--NESADQAAERELEEETS--LT------G--IPL-------IP--FG------VFDKPGRDP---R--------------GWIIS--RAFYAIVPPEALE-KR----AAGDDAADIGLFSM----------TE--ALEL-----------------------P---LAF-DHLDMLKKAYSAITEEFLLTTAICDFLPETFSAELLYQTLDGCTKPGI---LPDEVEFMENIEYLPYLEKVGE------LYRFNADAEAGSIYF
1 PsiBlast_PDB 95.4393%-102 - C2 -3I9X ? A:[23-179] -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RTPDGYTSDMILTTVKELNGKPTLHILLIKRSLTNAEG------KPNMEGGKWAVPGGFVDE--NESAEQAAERELEEETS--LT------D--IPL-------IP--FG------VFDKPGRDP---R--------------GWIIS--RAFYAIVPPEALE-KR----AAGDDAAEIGLFPM----------TE--ALEL-----------------------P---LAF-DHLDMLKKAFSAITEEFLLT--------------------------------------------------------------------------
121 HHSearch 95.2192%-100 - C2 -3I9X ? A:[23-178] -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RTPDGYTSDMILTTVKELNGKPTLHILLIKRS----LTNAEGKPNME--GGKWAVPGGFVDE--NESAEQAAERELEEETS--LT------D--IPL-------IP--FG------VFDKPGRDP---R--------------GWIIS--RAFYAIVPPEALE-KR----AAGDDAAEIGLFPM----------TE--ALEL-----------------------P---LAF-DHLDMLKKAFSAITEEFLL---------------------------------------------------------------------------
120 HHSearch 82.1431% -94 - C2 -2FML ? A:[32-268] ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LPEYEKP-SLTVDMVLLCYNKEA--DQLKVLLIQR-----KG------HPF--RNSWALPGGFVNR--NESTEDSVLRETKEETG--VV------ISQENI-------EQ--LH------SFSRPDRDP---R--------------GWVVT--VSYLAFIGEEPL--------IAGDDAKEVHWFNL----------ER--HGQHITLSHEDVEITLDLKTAASLGKDT---LAF-DHSEIIIKAFNRVVDKMEHEPQVLQVLGKDFTITEARKVFAKFL--GVDYRSIDHSNFKKAMT--QYFEELGEPSK---IYQLK----------
119 HHSearch 76.7628%-103 - C2 -3GZ5 ? A:[21-231] ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Q-LLTVDAVLFTYHD-Q---QLKVLLVQR-----SN------HPF--LGLWGLPGGFIDETCDESLEQTVLRKLAEKTA--VV------P--PYI-------EQ--LC------TVGNNSRDA---R--------------GWSVT--VCYTALMSYQACQ--I-----QIASVSDVKWWPL----------AD--VLQM-----------------------P---LAF-DHLQLIEQARERLTQKALYSLVPGFALSEPFTLPELQHVHEVLL--GK---PIQGKSFRRRVEQADLLIDTGLKRTPANLYCLKPDTAS-----
5 PsiBlast_PDB 69.1028% -85 * C1 *2FML ? A:[34-223] -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EYEKPSLTVDMVLLCYNKEAD---QLKVLLIQR-----KG------HPF--RNSWALPGGFVNR--NESTEDSVLRETKEETGVVIS------Q--ENI-------EQ--LH------SFSRPDRDP---R--------------GWVVT--VSYLAFIGEEPL--------IAGDDAKEVHWFNLERHGQHITLSHE--DVEITLDLKTAASLGKD----------T---LAF-DHSEIIIKAFNRVVDKMEHEPQVLQVLGKDFT--------------------------------------------------------------
148 Fugue 67.9626% -59 - C2 -2R5W ? A:[6-349] MYDISVFIGRFQPFHKGHLHNIIIALQNSKKVIINIGSCFNTPNIKNPFSFEQRKQMIESDLQVAGIDLDTVVIEPLADYFYQEQKWQDELRKNVYKHAKNNNSIAIVGHIKDSSSYYIRSFPEWDYIGVDNYKNFNATEFRQKFYNGIISKQYMCSNDPKLGTYNFLTKFMDTQVYQDLVAENNYVIEYKRLWLKAPFKPN-FVTVDALVIV--------NDHILMVQR-------------KAHPGKDLWALPGGFLEC--DETIAQAIIRELFEETN--INLTHEQLA--IAK-------RC--EK------VFDYPDRSV---R--------------GRTIS--HVGLFVFDQWPSLPEI----NAADDAKDVKWISL----------GS--NIKN-----------------------ICDRMLE-DHYQIITILLEECG--------------------------------------------------------------------------------
2 PsiBlast_PDB 65.3630% -86 - C2 -3GZ8 ? A:[10-157] ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LANYDPKAFKA-QLLTVDAVLFTYHD----QQLKVLLVQRSN-----------HPFL--GLWGLPGGFIDETCDESLEQTVLRKLAEKTA--VV------P--PYI-------EQ--LC------TVGNNSRDA---R--------------GWSVT--VCYTALMSYQACQ-IQ----IAS--VSDVKWWPL----------AD--VLQM-----------------------P---LAF-DHLQLIEQARERLT--------------------------------------------------------------------------------
4 PsiBlast_PDB 65.2630% -96 - C2 -3GZ6 ? A:[21-161] ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QLLTVDAVLFTYHDQQ----LKVLLVQRSN-----------HPFL--GLWGLPGGFIDETCDESLEQTVLRKLAEKTA--VV------P--PYI-------EQ--LC------TVGNNSRDA---R--------------GWSVT--VCYTALMSYQACQ-IQ----IAS--VSDVKWWPL----------AD--VLQM-----------------------P---LAF-DHLQLIEQARERLTQKAL----------------------------------------------------------------------------
3 PsiBlast_PDB 64.7930% -95 - C2 -3GZ5 ? A:[21-165] ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QLLTVDAVLFTYHDQQ----LKVLLVQRSN-----------HPFL--GLWGLPGGFIDETCDESLEQTVLRKLAEKTA--VV------P--PYI-------EQ--LC------TVGNNSRDA---R--------------GWSVT--VCYTALMSYQACQ-IQ----IAS--VSDVKWWPL----------AD--VLQM-----------------------P---LAF-DHLQLIEQARERLTQKAL----------------------------------------------------------------------------
127 HHSearch 59.8230% -65 - C2 -2QJT ? B:[199-349] -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------WLKAPFKPN-FVTVDALVIVN---D-----HILMVQR-----KA------HPG--KDLWALPGGFLEC--DETIAQAIIRELFEETN--IN------L--THE-------QLAIAKRCEK--VFDYPDRSV---R--------------GRTISHVGLFVFDQWPSLPE--I----NAADDAKDVKWISL----------GS--NIKN-----------------------ICDRMLE-DHYQIITILLEECG--------------------------------------------------------------------------------
21 PsiBlast_CBE 58.4731% -67 - C1 -2QJO NADM_SYNY3 C:[215-339] -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HVLMVRR-----QA------KPGL--GLIALPGGFIKQ--NETLVEGMLRELKEETR--LK---------VPLPVLRGSIVD--SH------VFDAPGRSL---R--------------GRTIT--HAYFIQLPGGELP-AV----K-------AWWMSL----------ADLYAQEE-----------------------Q---IYE-DHFQIIQHFVS-----------------------------------------------------------------------------------
22 PsiBlast_CBE 57.9731% -71 - C1 -2QJO NADM_SYNY3 B:[215-341] -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HVLMVRR-----QA------KPGL--GLIALPGGFIKQ--NETLVEGMLRELKEETR--LK---------VPLPVLRGSIVD--SH------VFDAPGRSL---R--------------GRTIT--HAYFIQLPGGELP-AV----KGGDDAQKAWWMSL----------ADLYAQEE-----------------------Q---IYE-DHFQIIQHFVSKV---------------------------------------------------------------------------------
126 HHSearch 54.7930% -61 - C2 -2QJO NADM_SYNY3 A:[191-338] ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KQAWATAPYAPT-FITTDAVVVQA---G-----HVLMVRR-----QA------KPG--LGLIALPGGFIKQ--NETLVEGMLRELKEETR--LK------V--PLP-------VL--RGSIVDSHVFDAPGRSL---R--------------GRTIT--HAYFIQLPGGELP-AV----K------KAWWMSL----------AD--LYAQ-----------------------EEQ-IYE-DHFQIIQHFV------------------------------------------------------------------------------------
129 HHSearch 54.7720% -62 - C2 -3O8S ? A:[68-199] --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TP-KLDTRAAIFQE---D-----KILLVQE-----N------------DGLWSLPGGWCDV--DQSVKDNVVKEVKEEAG--LD------V--EAQ-------RV--VA------ILDKHKNNP-------------------RVTK--VFILCRLLGGEF--------QPNSETVASGFFSL----------DD--LPPL-----------------------Y---LGK-NTAEQLALCLEASRSE------------------------------------------------------------------------------
6 PsiBlast_PDB 54.6431% -71 - C1 -2QJO NADM_SYNY3 A:[215-338] -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HVLMVRR-----QA------KPGL--GLIALPGGFIKQ--NETLVEGMLRELKEETR--LK---------VPLPVLRGSIVD--SH------VFDAPGRSL---R--------------GRTIT--HAYFIQLPGGELP-AV----K------KAWWMSL----------ADLYAQEE-----------------------Q---IYE-DHFQIIQHFV------------------------------------------------------------------------------------
134 HHSearch 54.0323% -59 - C2 -3FK9 - ? A:[2-128] -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QRVTNCIVVDH---D-----QVLLLQK-----PR-----------RGWWVAPGGKMEA--GESILETVKREYWEETG--IT------V--KNP-------EL--KG------IFSMVIFDEGKIV--------------SEWML--FTFKATEHEGE----M----LKQSPEGKLEWKKK----------DE--VLEL-----------------------P---MAA-GDKWIFKHVLHS----------------------------------------------------------------------------------
133 HHSearch 52.9321% -72 - C2 -3I7U ? A:[4-131] -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EFSAGGVLFKD---G-----EVLLIKT-----P------------SNVWSFPKGNIEP--GEKPEETAVREVWEETG--VK------G--EIL-------DY--IG------EIHYWYTLKGE-R--------------IFKTV--KYYLMKYKEGEP--------RPSWEVKDAKFFPI----------KE--AKKL-----------------------L---KYK-GDKEIFEKALKLKEK-------------------------------------------------------------------------------
147 Fugue 52.7521% -53 - C2 -1NQZ ? A:[4-190] -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PHDPLDDIQADPWALWLSGYRRAAVLVALTR---EADPRVLLTVRSK-----------------GQIAFPGGSLDA--GETPTQAALREAQEEVA--LD------P--AAV-------TL--LG------ELDDVFTPV---G----------------FHV--TPVLGRIAPEALD-TL----RVTPEVAQIITPTL----------AE--LRAV-----------------------P---LVR-ERRTLPDGTEVPLYRYPWRGLDIWG-----MTARVLHDLLE-----------------------------------------------------
136 HHSearch 52.3819% -75 - C2 -1F3Y - ? A:[14-162] -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RRNVGICLMNND-------KKIFAASR-----LD--------I--PDAWQMPQGGIDE--GEDPRNAAIRELREETG--VT------S--AEV-------IA--EV------PYWLTYDFP---PKVREKLNIQWGSDWKGQAQ--KWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTP----------EQ--LIDL---------------------------TVE-FKKPVYKEVLSVFA--------------------------------------------------------------------------------
138 HHSearch 51.7926% -73 - C2 -3CNG ? A:[27-162] ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ICPKCHTIHYQNP-KVIVGCIPEW-E--N-----KVLLCKR-----AI------APY--RGKWTLPAGFMEN--NETLVQGAARETLEEAN--AR------V--EIR-------EL--YA------VYSLPH---------------------ISQVY--MLFRAKLLDLDF--------FPGIESLEVRLFGE----------QE--IPWN-----------------------D---IAFRVIHDPLKRYME-----------------------------------------------------------------------------------