@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0512: (2016-03-16 )
MEQILFIQTGFGVDVHGQNITKAAERAVRNAIFTNSMPGIQGLLPDGDLQNMVVNIKLALPCDADQLDEDTIRAIIPYGTVTIEKMAGGMMTTSGIFLEDKEDKNDLMYIVNASVETGY
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------........---.10---.........20....--....30.-.--......40.....----.-------.-.----50.---------------.......---60...----....--.--70...--.....----------------80........90...---..--------...100.......110.......----------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
E
Q
I
L
F
I
Q---TG----F
G
V
D
VHG
Q
N
I
T
K
A
A
E
--
R
A
V
R
N
A
I
-F--TNSMPGIQGLLPD----G-------D-L----Q
N
M
---------------
V
V
N
I
K
L
A---LPCDA----DQL
D
--
E
--
D
T
I
R
A
--IIPYG----------------
T
V
T
I
E
K
MAGG
M
M
TT
S
---
G
I
--------
F
L
EDKEDKN
D
L
M
Y
I
V
NASVETGY----------
11
HHSearch
98.46
36%
-87
- C2 -
3C8L
7
?
A:
[3-119]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
R
K
R
L
I
I
E
---
M
G
----
M
G
I
D
Q
H
G
Q
E
P
T
I
A
A
S
--
R
A
V
R
N
A
I
-
A
--
H
N
A
L
P
G
V
W
E
V
A
G
L
----
S
-------
H
-
P
----
N
E
M
---------------
I
I
E
V
Q
V
A
---
V
P
Y
P
-----
E
Q
V
R
--
E
--
E
E
V
L
A
--
V
L
P
F
G
----------------
R
K
T
L
T
V
E
S
G
G
M
I
V
-
Q
---
G
R
--------
A
I
P
E
L
N
D
K
N
D
E
M
L
I
A
I
A
A
V
T
V
L
I
----------
1
PsiBlast_PDB
94.13
35%
-95
- C2 -
3C8L
5
?
A:
[7-115]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
I
I
E
---
M
G
----
M
G
I
D
Q
H
G
Q
E
P
T
I
A
A
S
--
R
A
V
R
N
A
I
-
A
--
H
N
A
L
P
G
V
W
E
V
A
G
L
----
S
-------
H
-
P
----
N
E
M
---------------
I
I
E
V
Q
V
A
---
V
P
Y
P
-----
E
Q
V
R
--
E
--
E
E
V
L
A
--
V
L
P
F
G
----------------
R
K
T
L
T
V
E
S
G
G
M
I
-
V
Q
---
G
R
--------
A
I
P
E
L
N
D
K
N
D
E
M
L
I
A
I
A
A
V
--------------
27
Fugue
61.04
14%
-81
- C1 -
2RH3
-
VIRC2_AGRFC
A:
[82-202]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
Q
V
F
L
S
A
R
P
P
A
P
E
----
V
S
K
I
Y
D
N
L
I
L
Q
Y
S
P
S
--
K
S
L
Q
-
M
I
-
L
--
R
R
A
L
G
D
F
E
N
M
L
A
D
----
G
-------
S
-
F
----
R
A
A
PK
S
Y
P
I
P
HTAFE
K
S
I
I
V
Q
T
S
R
M
---
F
P
-------
V
S
L
I
--
E
--
A
A
R
N
H
--
F
D
P
L
G
----------------
L
E
T
A
R
A
F
G
H
K
L
A
T
A
A
L
--
A
C
--------
F
F
A
R
E
K
A
T
N
S
-----------------------
25
Fugue
55.04
18%
-61
- C1 -
3MVC
10
GLOB6_CAEEL
A:
[1-161]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LHLT
Q
P
Q
I
L
F
V
R
---
K
T
----
W
N
-
H
A
R
N
Q
G
A
L
E
P
A
I
--
S
I
F
R
N
S
F
-
F
--
K
N
--
P
E
I
R
Q
M
I
M
F
----
G
T
K
N
E
G
H
E
R
-
L
----
K
K
H
---------------
A
Q
L
F
T
V
L
---
M
D
D
L
I
----
A
N
L
D
SP
S
--
A
T
V
A
G
--
L
R
E
A
G
E
K
H
VWPTRNQYG
C
P
F
H
A
H
L
L
D
Q
F
A
T
A
M
I
E
R
T
L
E
W
D
R
--------
T
E
T
T
Q
R
G
W
T
K
I
V
L
F
V
T
E
Q
L
K
E
G
F
Q
D
E
Q
K
R
ARR-
22
Fugue
52.93
13%
-51
* C1 *
1P9Y
1
TIG_ECOLI
A:
[4-120]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
Q
V
S
V
E
T
T
---
Q
G
L
G
R
R
V
T
I
T
I
A
A
D
S
I
E
T
A
V
K
--
S
E
L
V
N
V
A
-
K
--
K
V
R
I
D
G
L
R
K
G
K
V
P
----
M
-------
N
-
I
----
V
A
Q
---------------
R
Y
G
A
S
V
R
---
Q
D
V
L
G
----
D
L
M
S
--
R
--
N
F
I
D
A
--
I
I
K
E
K
----------------
I
N
P
A
G
--------
A
P
---
T
Y
--------
V
P
G
E
Y
K
L
G
E
D
F
T
Y
S
V
E
F
E
V
Y
P
E
V
EL--------
28
Fugue
52.92
16%
-61
- C1 -
2K19
-
?
A:
[1-98]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
K
L
K
W
F
S
---
G
G
--------------
K
E
R
S
N
--
Q
A
E
--
N
I
-
I
--
T
D
L
L
D
D
L
K
T
D
L
D
N
----
E
-------
S
-
L
----
K
K
V
---------------
L
E
N
Y
L
E
E
---
L
K
Q
K
S
----
A
S
---------------
V
P
L
I
----------------
L
S
R
M
N
L
D
I
S
K
A
I
R
N
D
---
G
V
--------
T
L
S
D
Y
Q
S
K
K
L
K
E
L
T
S
I
S
N
I
R
Y
G
Y
----------
24
Fugue
52.59
19%
-56
- C1 -
3GXV
1
DNAB_HELPY
A:
[1-122]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
D
H
L
K
H
L
Q
Q
L
Q
N
I
E
--
R
I
V
L
S
G
I
-
V
L
A
N
H
K
I
E
E
V
H
S
V
L
E
P
----
S
-------
D
-
F
YY
P
P
N
G
L
---------------
F
F
E
I
A
L
K
---
L
H
E
E
D
----
C
P
I
D
--
E
--
N
F
I
R
Q
--
K
M
P
K
D
----------------
K
Q
I
K
E
E
D
L
V
A
I
F
A
A
S
---
P
I
D
NI
E
A
Y
V
E
E
I
K
N
A
S
I
K
R
K
L
F
G
L
A
N
T
I
R
E
Q
A
H
----------
8
PsiBlast_PDB
52.47
34%
-57
- C2 -
4KWE
-
FTSZ_MYCTU
A:
[239-297]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
A
A
E
--
I
A
I
N
S
P
L
-
L
--
E
A
S
M
E
G
A
Q
G
V
L
M
S
I
A
G
G
S
-------
D
-
L
----
G
L
F
---------------
E
I
N
E
A
A
S
---
L
V
Q
D
A
----
A
H
P
D
--
A
--
N
I
I
-------
F
G
----------------
T
V
-----------------------------------------------------------
30
Fugue
52.08
22%
-22
- C1 -
4NNB
2
?
A:
[4-527]
T
S
L
Y
I
T
A
A
P
I
GA
V
P
K
F
L
DPFEATFIP
S
F
L
L
E
GFFD
A
D
R
C
A
S
I
A
A
D
L
K
T
D
G
W
E
V
V
P
A
G
G
R
L
L
Q
V
GHAQPIAHFP
K
P
W
L
A
A
L
S
N
K
L
A
R
R
I
V
L
Q
L
T
T
Y
G
W
I
V
S
EQG
D
L
L
W
EHE
R
Q
H
H
Y
L
P
P
A
L
I
E
A
I
E
K
E
S
P
A
L
L
K
N
M
E
E
A
GW
I
A
C
A
A
GYWQAGKARSPYLPIT
P
E
A
I
T
E
E
T
I
R
S
M
R
A
GAA
V
V
H
L
H
T
R
D
LSD
R
R
R
I
E
I
P
GL
G
V
V
T
V
G
SQRNQIV
L
D
D
Y
D
A
I
V
P
M
V
K
K
R
EPA
A
I
L
N
L
S
TSVRGDRHGARSKLRRAHLKFYDDVGSAPE
V
A
S
L
S
P
A
A
V
V
F
QG
G
G
G
Y
D
NA
P
D
F
L
D
A
Q
F
D
H
F
E
R
V
GTRPEVEVFN
H
A
I
V
D
N
A
T
SLY
R
D
R
L
L
R
T
GKP
V
L
F
M
L
VAG
V
D
Q
Y
R
R
DPITGEVEDDSLIA
R
V
V
R
E
E
I
S
S
L
L
---
A
D
----
E
S
A
D
S
H
R
R
A
V
E
L
A
I
G
Q
L
R
P
V
V
E
R
L
-
R
--
A
S
F
P
V
S
K
I
S
I
L
L
P
----
G
-------
P
-
M
----
Q
N
L
---------------
L
V
D
V
A
L
G
---
L
G
L
D
G
----
I
R
V
G
L-
E
--
D
G
L
-------------------------
T
V
N
D
A
R
V
P
G
G
V
R
K
A
R
---
G
T
--------
W
E
Q
V
S
L
V
R
E
E
L
L
G
R
-
G
A
T
I
L
T
A
A
Q
V
R
D
M
F
GLGI
9
PsiBlast_PDB
50.66
34%
-46
- C2 -
2Q1X
-
FTSZ_MYCTU
A:
[236-294]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
A
A
E
--
I
A
I
N
S
P
L
-
L
--
E
A
S
M
E
G
A
Q
G
V
L
M
S
I
A
G
G
S
-------
D
-
L
----
G
L
F
---------------
E
I
N
E
A
A
S
---
L
V
Q
D
A
----
A
H
P
D
--
A
--
N
I
I
-------
F
G
----------------
T
V
-----------------------------------------------------------
5
PsiBlast_PDB
49.83
34%
-45
- C2 -
1RLU
-
FTSZ_MYCTU
A:
[239-297]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
A
A
E
--
I
A
I
N
S
P
L
-
L
--
E
A
S
M
E
G
A
Q
G
V
L
M
S
I
A
G
G
S
-------
D
-
L
----
G
L
F
---------------
E
I
N
E
A
A
S
---
L
V
Q
D
A
----
A
H
P
D
--
A
--
N
I
I
-------
F
G
----------------
T
V
-----------------------------------------------------------
23
Fugue
49.48
15%
-70
- C1 -
4P78
-
?
A:
[1-86]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
Y
P
I
F
I
F
---
K
T
-------------------------
V
E
G
-
F
--
D
G
Y
F
P
D
I
D
G
C
F
F
A
----
G
-------
N
T
F
----
A
D
I
---------------
S
K
N
A
E
E
A
---
F
A
V
H
I
----
E
A
L
M
--
N
--
E
--
G
F
--
P
L
P
S
P
----------------
P
K
D
P
H
R
Y
I
D
D
--------------------
P
R
L
K
E
E
G
G
I
L
G
F
V
E
I
D
P
--------------
7
PsiBlast_PDB
49.43
34%
-46
- C2 -
1RQ7
-
FTSZ_MYCTU
A:
[239-297]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
A
A
E
--
I
A
I
N
S
P
L
-
L
--
E
A
S
M
E
G
A
Q
G
V
L
M
S
I
A
G
G
S
-------
D
-
L
----
G
L
F
---------------
E
I
N
E
A
A
S
---
L
V
Q
D
A
----
A
H
P
D
--
A
--
N
I
I
-------
F
G
----------------
T
V
-----------------------------------------------------------
6
PsiBlast_PDB
48.22
34%
-43
- C2 -
1RQ2
-
FTSZ_MYCTU
A:
[239-297]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
A
A
E
--
I
A
I
N
S
P
L
-
L
--
E
A
S
M
E
G
A
Q
G
V
L
M
S
I
A
G
G
S
-------
D
-
L
----
G
L
F
---------------
E
I
N
E
A
A
S
---
L
V
Q
D
A
----
A
H
P
D
--
A
--
N
I
I
-------
F
G
----------------
T
V
-----------------------------------------------------------
10
PsiBlast_PDB
48.05
34%
-42
- C2 -
2Q1Y
-
FTSZ_MYCTU
A:
[236-294]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
A
A
E
--
I
A
I
N
S
P
L
-
L
--
E
A
S
M
E
G
A
Q
G
V
L
M
S
I
A
G
G
S
-------
D
-
L
----
G
L
F
---------------
E
I
N
E
A
A
S
---
L
V
Q
D
A
----
A
H
P
D
--
A
--
N
I
I
-------
F
G
----------------
T
V
-----------------------------------------------------------
29
Fugue
43.35
11%
-35
- C1 -
4UZZ
-
?
A:
[2-109]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
A
---
S
P
----
K
Q
I
Q
M
W
I
N
N
V
A
E
I
R
K
--
T
K
Q
P
H
S
V
S
Y
--
T
K
P
M
P
E
I
D
E
L
M
Q
E
WP--
Q
-------
E
-
I
----
E
E
I
---------------
L
Q
H
L
K
I
P
SEE
L
D
F
N
L
----
S
D
F
C
--
K
--
L
A
C
A
I
L
D
I
P
V
H
D
----------------
Q
P
N
E
S
N
V
I
E
S
L
H
V
L
F
---
T
L
--------
Y
S
E
F
K
S
N
Q
H
F
-----------------------
2
PsiBlast_PDB
41.45
46%
-87
- C2 -
1LS9
1
CYC6_CLAGO
A:
[52-81]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
----
K
Y
Q
---------------
V
N
N
G
K
G
A
---
M
P
A
W
A
----
D
R
L
D
--
E
--
D
D
I
E
A
--
V
S
N
Y
------------------------------------------------------------------------------
20
HHSearch
34.48
17%
-0
- C2 -
2VKC
-
N4BP2_HUMAN
A:
[1688-1711]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
----
N
V
L
D
L
H
G
L
H
V
D
E
A
-
L
--
E
H
L
M
R
V
L
-
E
--
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
32.44
18%
10
- C2 -
3FAU
-
N4BP2_HUMAN
A:
[11-41]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
D
L
H
G
L
H
V
D
E
-
A
L
--
E
H
L
M
R
V
L
-
E
--
K
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
31.85
30%
-15
- C2 -
2E0N
1
?
A:
[118-182]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
--
R
A
R
R
D
G
L
-
D
--
C
S
M
T
P
G
I
P
A
F
I
A
A
----
G
-------
S
-
A
----
A
G
M
-------------------
P
L
A
---
L
Q
S
D
S
V
L
V
L
A
Q
I
D
--
E
I
G
E
L
E
R
A
--
L
V
T
H
S
----------------
T
V
V
V
M
K
L
S
-----------------------------------------------------