@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0598: (2016-03-17 )
MRDQKLKFLVVDALFAVIIALLAQVAIPLGPIPLTGQTFAIGLAATILGARHGTISVLVYIVLGAVGIPVFQGMTAGIGIIFGPTGGFIIGFIFNAFLTGWLLEKTKFTVPYAIVANILGAIVTLIFGVLWLKVSTGLDWPTAFLTGMVPFIIPGIIKAVFAALLGIIIRDRLIKAKLLRAS
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------.........10...---.-----....20.---...-....30........40...-.....50........60........70........80-.........90-........100.....-..110.------......120.-.......130.......---140.......150.--...-...160.......170.......180-.------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------MRDQ
K
L
K
F
L
V
V
D
A
L
---
F
-----
A
V
I
I
A
L
L
---
A
Q
V-AIPLGPIPLTG
Q
T
F
A
I
G
L
A
-
A
T
I
L
GARH
G
T
I
S
V
L
V
Y
I
V
L
GAVG
I
P
V
F
QGMTAG
I
G
I
--
I
FGPTG
G
F
I
I
G
-
F
I
F
N
A
F
L
T
G
W
L
LEKTK-FT
V
P
Y
A
------
I
V
A
N
I
L
G
-
A
I
-
V
T
L
I
F
G
V
L
W
L
KVSTGLD---
W
P
T
A
F
L
T
G
M
V
P
F
I
I
--
P
G
I
-
I
K
A
V
F
A
A
L
L
G
I
I
I
R
D
R
L
I
K
A
K
LLR-A-S------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
91.93
31%
-157
- C6 -
4DVE
4
BIOY_LACLM
A:
[13-189]
-------------------------------------------------------------------------------------------------------------------------------------
N
N
Q
K
V
K
T
L
T
Y
S
A
F
M
T
A
F
-----
I
I
I
L
G
F
L
---
P
G
I
-
P
I
G
F
I
P
V
P
I
I
L
Q
N
M
G
I
M
M
A
-
G
G
L
L
G
P
K
Y
G
T
I
S
V
G
A
F
L
A
L
A
L
I
G
L
P
V
L
T
G
G
N
G
G
A
A
S
--
F
L
G
P
S
G
G
Y
R
I
A
-
W
L
F
T
P
F
L
I
G
F
F
L
K
K
L
K
-
I
T
T
S
Q
N
W
F
G
E
L
-
I
I
V
L
L
F
G
-
V
I
-
F
V
D
F
V
G
A
I
W
L
S
F
Q
S
N
I
P
---
L
L
T
S
L
I
S
N
L
V
--
F
I
--
P
G
----
D
C
I
K
A
I
L
T
V
V
I
V
R
R
L
R
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
74.13
16%
-162
- C6 -
4RFS
-
?
S:
[3-200]
-------------------------------------------------------------------------------------------------------------------------------------
R
H
K
T
F
R
L
V
V
D
A
L
L
---
M
-----
A
I
V
L
L
Q
N
LVP
F
L
G
-
Y
I
P
F
G
P
F
S
M
T
L
I
G
L
T
V
I
V
A
-
G
S
A
L
G
P
R
D
G
L
L
I
G
G
F
W
G
L
I
T
F
V
R
A
F
T
W
P
S
S
P
V
A
P
L
I
--
F
T
N
P
L
I
S
I
L
P
R
-
L
L
M
G
L
V
A
G
S
L
Y
L
W
G
R
H
-
R
Q
W
S
M
R
------
Q
A
M
Q
V
A
A
-
G
C
-
A
A
L
T
N
T
V
L
V
L
G
L
V
F
L
F
Y
---
Q
T
P
A
V
L
G
Y
V
L
M
I
S
L
FT
N
G
I
-
P
E
L
I
L
D
V
L
V
A
P
L
I
A
M
P
L
R
R
Q
W
E
R
L
-
K
-
P
Q-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
71.22
19%
-180
- C4 -
4XGC
-
?
C:
[1-676]
MQ
P
F
Y
E
E
Y
R
K
A
W
N
Q
I
N
D
H
I
A
D
L
Q
H
R
S
Y
A
R
T
L
E
Q
L
V
D
F
V
V
G
Q
A
E
RDE
V
L
P
T
A
A
L
LTGINQPDH
L
S
Q
F
T
A
L
T
Q
R
L
H
A
Q
RA
A
M
V
C
V
L
Q
SRDCAT
L
K
A
A
V
E
T
L
V
F
G
L
V
E
D
N
A
E
V
E
QLRRSQCT
M
K
Q
L
K
S
W
Y
T
N
N
FD
S
E
Q
K
R
R
Q
L
V
V
I
L
P
D
---
F
ECFN
A
S
V
L
Q
D
L
I
---
L
I
L
-
S
A
H
C
G
S
L
P
-----
F
V
L
V
L
G
V
A
T
A
M
T
A
V
H
G
T
L
P
---
Y
H
V
S
S
K
I
R
L
R
V
F
Q
T
Q
A
----------------
A
P
-
T
G
L
N
E
V
L
D
K
V
L
L
------
S
P
K
Y
A
------
F
--
H
L
S
G
-
K
T
-
F
K
F
L
T
H
I
F
L
Y
Y
D
F
S
I
H
G
---
F
I
Q
G
F
K
Y
C
L
M
E
H
F
F
--
G
G
N
-
A
F
A
L
C
T
D
Y
S
K
A
L
G
R
I
K
Q
L
T
H
E
D
M
E
-
T
-
I
R
R
LPS
F
R
P
Y
V
E
Q
IND
C
K
R
I
I
A
V
L
TD
D
D
Y
L
K
K
K
L
P
Q
L
L
R
D
C
L
L
H
F
L
L
F
R
C
S
L
E
F
L
T
E
L
V
G
D
LPRCPLGKL
R
R
E
L
Y
V
N
C
L
N
RAIIST
P
E
Y
K
E
C
L
Q
M
L
S
F
LSK
D
E
F
V
A
K
V
N
R
A
L
E
R
T
E
Q
F
L
V
E
EIAPLEL
G
E
A
C
T
A
V
L
R
P
K
L
E
A
I
R
L
A
V
D
E
VG
R
A
L
Q
K
T
L
Q
L
I
E
T
Q
IVQDHLRALQDAPPIHELFVFSD
I
A
T
V
R
R
N
I
I
GAP
R
A
A
L
H
T
A
L
N
NPHFP
D
L
S
V
V
Y
K
L
H
L
E
C
GRMIN
L
F
D
W
L
Q
A
F
R
S
V
VP
Q
I
Q
A
R
F
T
R
A
V
A
E
L
Q
F
L
GYIKMSKRKTD
H
A
T
R
LTW
28
Fugue
68.07
14%
-156
- C6 -
4HUQ
-
?
S:
[10-173]
----------------------------------------------------------------------------------------------------------------------------------------
D
T
L
S
M
V
T
M
G
V
---
L
-----
M
A
L
Q
L
V
I
---
S
R
F
-
S
V
G
N
N
F
I
K
V
S
F
T
F
L
I
V
A
L
I
-
A
K
W
F
G
P
W
W
G
M
L
T
A
A
V
V
D
V
I
G
T
L
M
T
G
--------------
G
P
F
F
I
G
F
T
V
S
-
A
V
L
G
S
L
I
Y
A
V
F
L
Y
R
Q
P
-
V
S
W
W
R
V
------
I
G
A
S
V
L
I
-
A
L
L
V
N
T
L
L
N
T
L
W
V
T
I
M
Y
Q
T
P
---
F
W
S
L
L
P
V
R
A
L
K
E
L
I
--
V
----
T
P
V
Q
I
V
L
V
Y
L
L
L
K
S
Q
V
I
Q
M
I
Q
A
R
-
L
-
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
63.84
20%
-148
- C3 -
4QT6
11
A:
[1-157]
-----------------------------------------------------------------------------------------------------------------------------------G
F
D
P
E
K
A
Q
C
C
L
V
E
N
G
---
Q
-----
I
L
T
H
G
------------------
S
G
G
K
-
G
Y
G
L
A
-
S
T
--
G
V
T
S
G
C
Y
Q
W
K
F
Y
I
V
K
E
N
R
G
---
N
E
G
T
C
V
G
V
S
R
W
P
V
H
D
F
N
H
R
T
T
S
D
M
W
L
Y
R
A
Y
-
S
G
N
L
Y
H
N
G
E
-
Q
T
L
T
L
S
SFTQG
D
F
I
T
C
V
L
D
M
E
A
-
R
T
I
S
F
G
K
------
N
G
E
E
---
P
K
L
A
F
E
D
V
D
A
A
E
L
Y
--
P
C
V
M
F
Y
S
----------
S
N
P
G
E
K
V
K
I
C
D
M
Q
M
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
61.64
15%
-135
* C6 *
3RLB
8
?
A:
[17-187]
----------------------------------------------------------------------------------------------------------------------------------------
N
V
R
L
L
T
E
I
A
F
---
M
-----
A
A
L
A
F
I
I
---
S
L
I
P
N
T
V
Y
G
W
I
I
V
E
I
A
C
I
P
I
L
L
L
-
S
L
R
R
G
L
T
A
G
L
V
G
G
L
I
W
G
I
L
S
M
I
----
T
G
-
H
-
A
Y
I
L
S
--
L
S
Q
A
F
L
E
Y
L
V
A
-
P
V
S
L
G
I
-
A
G
L
F
R
Q
K
T
A
P
L
K
L
A
P
V
------
L
L
G
T
F
V
A
-
V
L
-
L
K
Y
F
F
H
F
I
A
G
I
I
F
W
S
Q
Y
AWK
G
W
G
A
V
A
Y
S
L
A
V
N
G
I
--
S
G
I
-
L
T
A
I
A
A
F
V
I
L
I
I
F
V
K
K
F
P
K
L
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
58.42
26%
-97
- C7 -
4NBE
1
?
A:
[191-268]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
I
L
V
K
D
---
N
D
L
-
A
L
P
L
G
F
A
P
G
G
D
R
K
Q
Q
T
R
V
V
-
D
D
D
V
V
G
R
K
G
-----
V
Y
D
L
I
G
E
H
G
V
P
V
F
E
G
T
I
G
G
E
V
V
--
R
E
G
A
Y
G
E
K
I
V
A
-
N
D
I
S
I
W
L
P
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
58.16
26%
-95
- C7 -
4NB8
-
?
A:
[191-268]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
I
L
V
K
D
---
N
D
L
-
A
L
P
L
G
F
A
P
G
G
D
R
K
Q
Q
T
R
V
V
-
D
D
D
V
V
G
R
K
G
-----
V
Y
D
L
I
G
E
H
G
V
P
V
F
E
G
T
I
G
G
E
V
V
--
R
E
G
A
Y
G
E
K
I
V
A
-
N
D
L
S
I
W
L
P
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
57.93
26%
-102
- C7 -
4NBH
-
?
A:
[191-268]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
I
L
V
K
D
---
N
D
L
-
A
L
P
L
G
F
A
P
G
G
D
R
K
Q
Q
T
R
V
V
-
D
D
D
V
V
G
R
K
G
-----
V
Y
D
L
I
G
E
H
G
V
P
V
F
E
G
T
I
G
G
E
V
V
--
R
E
G
A
Y
G
E
K
I
V
A
-
N
D
I
S
I
W
L
P
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
57.93
26%
-97
- C7 -
2DE5
-
?
A:
[191-268]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
I
L
V
K
D
---
N
D
L
-
A
L
P
L
G
F
A
P
G
G
D
R
K
Q
Q
T
R
V
V
-
D
D
D
V
V
G
R
K
G
-----
V
Y
D
L
I
G
E
H
G
V
P
V
F
E
G
T
I
G
G
E
V
V
--
R
E
G
A
Y
G
E
K
I
V
A
-
N
D
I
S
I
W
L
P
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
57.88
26%
-99
- C7 -
4NBG
-
?
A:
[191-268]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
I
L
V
K
D
---
N
D
L
-
A
L
P
L
G
F
A
P
G
G
D
R
K
Q
Q
T
R
V
V
-
D
D
D
V
V
G
R
K
G
-----
V
Y
D
L
I
G
E
H
G
V
P
V
F
E
G
T
I
G
G
E
V
V
--
R
E
G
A
Y
G
E
K
I
V
A
-
N
D
I
S
I
W
L
P
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
57.75
26%
-101
- C7 -
3VMI
-
?
A:
[191-268]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
I
L
V
K
D
---
N
D
L
-
A
L
P
L
G
F
A
P
G
G
D
R
K
Q
Q
T
R
V
V
-
D
D
D
V
V
G
R
K
G
-----
V
Y
D
L
I
G
E
H
G
V
P
V
F
E
G
T
I
G
G
E
V
V
--
R
E
G
A
Y
G
E
K
I
V
A
-
N
D
I
S
I
W
L
P
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
57.67
26%
-98
- C7 -
3VMH
-
?
A:
[191-268]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
I
L
V
K
D
---
N
D
L
-
A
L
P
L
G
F
A
P
G
G
D
R
K
Q
Q
T
R
V
V
-
D
D
D
V
V
G
R
K
G
-----
V
Y
D
L
I
G
E
H
G
V
P
V
F
E
G
T
I
G
G
E
V
V
--
R
E
G
A
Y
G
E
K
I
V
A
-
N
D
I
S
I
W
L
P
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
57.61
26%
-98
- C7 -
3VMG
-
?
A:
[191-268]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
I
L
V
K
D
---
N
D
L
-
A
L
P
L
G
F
A
P
G
G
D
R
K
Q
Q
T
R
V
V
-
D
D
D
V
V
G
R
K
G
-----
V
Y
D
L
I
G
E
H
G
V
P
V
F
E
G
T
I
G
G
E
V
V
--
R
E
G
A
Y
G
E
K
I
V
A
-
N
D
I
S
I
W
L
P
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
57.46
26%
-98
- C7 -
4NBD
1
?
A:
[191-268]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
I
L
V
K
D
---
N
D
L
-
A
L
P
L
G
F
A
P
G
G
D
R
K
Q
Q
T
R
V
V
-
D
D
D
V
V
G
R
K
G
-----
V
Y
D
L
I
G
E
H
G
V
P
V
F
E
G
T
I
G
G
E
V
V
--
R
E
G
A
Y
G
E
K
I
V
A
-
N
D
I
S
I
W
L
P
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
57.45
15%
-146
- C5 -
2JHB
-
PEBB_MOUSE
A:
[1-143]
------------------------------------------------------------------------------------------------------------------------------GSMPRV
V
P
D
Q
R
S
K
F
E
N
E
E
F
F
---
R
-----
K
L
S
R
E
C
E
---
I
K
Y
T
G
F
R
D
R
P
H
E
E
R
Q
T
R
F
Q
N
A
C
R
-
D
-------
G
R
S
E
I
A
F
----------
V
A
T
G
T
N
L
S
L
Q
F
--
F
P
A
S
W
Q
G
E
Q
R
Q
-
T
P
S
R
E
Y
V
-
D
L
E
R
E
A
G
K
-
V
Y
L
K
A
P
------
M
I
L
N
------------
G
V
-
C
V
I
W
K
G
W
I
D
---
L
H
R
--
L
D
G
M
G
C
L
E
F
--
D
----------------
E
E
R
A
Q
Q
E
D
A
L
A
-
Q
-
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
57.35
26%
-103
- C7 -
2DE7
-
?
A:
[191-268]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
I
L
V
K
D
---
N
D
L
-
A
L
P
L
G
F
A
P
G
G
D
R
K
Q
Q
T
R
V
V
-
D
D
D
V
V
G
R
K
G
-----
V
Y
D
L
I
G
E
H
G
V
P
V
F
E
G
T
I
G
G
E
V
V
--
R
E
G
A
Y
G
E
K
I
V
A
-
N
D
I
S
I
W
L
P
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
57.08
26%
-91
- C7 -
4NBF
-
?
A:
[191-268]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
I
L
V
K
D
---
N
D
L
-
A
L
P
L
G
F
A
P
G
G
D
R
K
Q
Q
T
R
V
V
-
D
D
D
V
V
G
R
K
G
-----
V
Y
D
L
I
G
E
H
G
V
P
V
F
E
G
T
I
G
G
E
V
V
--
R
E
G
A
Y
G
E
K
I
V
A
-
N
D
I
S
I
W
L
P
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
57.03
26%
-98
* C7 *
1WW9
-
?
A:
[191-268]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
I
L
V
K
D
---
N
D
L
-
A
L
P
L
G
F
A
P
G
G
D
R
K
Q
Q
T
R
V
V
-
D
D
D
V
V
G
R
K
G
-----
V
Y
D
L
I
G
E
H
G
V
P
V
F
E
G
T
I
G
G
E
V
V
--
R
E
G
A
Y
G
E
K
I
V
A
-
N
D
I
S
I
W
L
P
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
56.85
11%
-138
- C2 -
1C06
-
RS4_GEOSE
A:
[1-159]
------------------------------------------------------------------------------------------------------------------------------------
M
K
L
S
E
Y
G
L
Q
L
Q
E
K
Q
---
K
-----
L
R
H
M
Y
G
V
-----
N
-
E
R
Q
F
R
K
T
F
E
E
A
G
K
M
P
G
K
H
G
-
E
N
F
M
I
L
L
E
S
R
L
D
N
L
V
Y
R
L
G
L
A
R
T
R
R
Q
A
R
Q
L
V
T
H
G
H
I
--
L
V
D
G
S
R
V
N
I
P
S
-
Y
R
V
K
P
G
Q
T
I
A
V
R
E
K
S
R
-
N
L
------------
Q
V
I
K
E
-
A
L
-
E
A
N
N
Y
I
P
D
Y
L
S
F
D
P
E
K
---------
M
E
G
T
Y
T
R
L
P
--
E
--------
R
S
E
L
P
A
E
I
N
E
A
L
I
V
E
F
Y
S
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------