@TOME V2.3
(Nov 2016)

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Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
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Values color: [ Good | Correct | Middling | Bad ]Sequence color : MutatedHelixStrandConserved

Query sequence : Lmo0655: (2016-03-17 )
MKPIFAVGDVHGEITLLDELLENWDKERERLLFVGDLIDRGENPAAVLRRVKALADQTGAIVLKGNHEQMLLDFLENPSGKMHYYLSQGGMETIQSLIADSLDKKMTPEGLAKRVKEEASELIDFIRKLPLYYEEGKYVFVHAGVDLTKKDWHDTEERDFFWIREPFLFGQNKTGKVFIFGHTPVQNLHIDESSGIWVSEDKTRLDIDGGAVFGGELHGVVVEEKVITKSFSVKK

Atome Classification :

(20 SA) ----------------------------------------------------------------.........10........20.---------.--..-------------------.---------...-30........40........50....--.-----...60----.--------------------------........70......-----..80........90-----....-....100.......110.......120----------.......130--...--.----.----.--...-140...-----------------------....-150----.-------------.---------------.-------.-----------------..-------..-160.....------------------------.-----------.---------------.-----------------170-------------------------..------..-------------..------..-.180..-.....190..----..-------..-----------.200........210.----.----.-----....220.......230...-----
(Atome) (Ident) (Tito) (Num) (Ligand) (Uniprot) ----------------------------------------------------------------MKPIFAVGDVHGEITLLDELLE---------N--WD-------------------K---------ERE-RLLFVGDLIDRGENPAAVLRRVKALA--D-----QTGA-----I--------------------------VLKGNHEQMLLDFLEN-----PSGKMHYYLSQGGM-----ETIQ-SLIADSLDKKMTPEGLAKRVKEEASEL----------IDFIRKLP----LYY--E----E----G--KYV-FVHAGV-----------------------DLTK-K-D----W-------------H---------------D-------T-----------------EE-------RD-FF-WIREP------------------------F-----------L---------------F-----------------G---------------------------QN------KT-------------GK------VF-IFGHTP-VQNLHIDESS----GI-------WV-----------SE-DKTRLDIDGGAVF----G----G-----ELHGVVVEEKVITKSFSVKK-----
120 Fugue 85.2231% -98 - C1 -1G5B PP_LAMBD A:[1-219] -----------------------------------------------------MRYYEKIDGSKYRNIWVVGDLHGCYTNLMNKLD---------TIGFD-------------------N---------KKD-LLISVGDLVDRGAENVECLELIT-----------FPWF-----R--------------------------AVRGNHEQMMIDGLSE-----RGNVNHWL--LNGG-----GWFF-NL--------------DYDKEILAKAL----------AHKADELPLIIELVS--K----D----K--KYV-ICHADY-----------------------PFDEYE-F----G-------------K---------------P-------V-----------------DH-------QQ-VI-WNRER------------------------I-----------S---------------N-----------------S---------------------------QN------GI-------------VKEIKGADTF-IFGHTP-AVKPLKFAN---------------------------------QMYIDTGAVF----C----G-----NLTLIQVQGA---------------
2 PsiBlast_PDB 81.4326% -86 - C3 -4J6O ? A:[13-250] ------------------------------------------------------------------PFDIIGDIHGCYDELKMLLE---------K--LGYLIEEVEGGVGSGKYRVTHP---------EGR-KVLFLGDLVDRGPKITEVLKLVMGMV--K-----SGIA-----L--------------------------CVPGNHDVKLLRKLNG------------------------RDVQ---ITHGLDR--TLEQLAKEPQEFIEEV----------KAFIDGLV----SHYVLD----D----G--KLV-VAHAGM--------------------------K-E-E----F-------------QGRGSGKVREFALYGET-------T-----------------GE-------TD-EY-GLPVR------------------------Y-----------D---------------W-----------------A---------------------------SD------YR-------------GK------ALVVYGHTPQAEVLKVNNT----------------------------------INIDTGCVF----G----G-----KLTAYRYPEREIVDVKALK------
102 HHSearch 79.0832% -78 - C1 -1G5B PP_LAMBD A:[12-219] ----------------------------------------------------------------YRNIWVVGDLHGCYTNLMNKLD---------T--IG-------------------FDN-------KKD-LLISVGDLVDRGAENVECLELITFP-----------WF-----R--------------------------AVRGNHEQMMIDGLSE-----RGNVNHW-LLNGGG-----WFFNLDYDKE---------ILA-------KAL----------AHKADELP----LII--E----LVSKDK--KYV-ICHADY-----------------------PFDE-Y-EF---G-------------K---------------P-------V-----------------DH-------QQ-VI-WNRER------------------------I-----------S---------------N-----------------SQNGIVK---------------------EI------KG-------------AD------TF-IFGHTP-AVKP--------------------L------------K-FANQMYIDTGAVF----C----G-----NLTLIQVQGA---------------
100 HHSearch 74.1523%-105 - C1 -2QJC ? A:[18-242] ----------------------------------------------------------------TGRVIIVGDIHGCRAQLEDLLR---------A--VSFK-----------------Q---------GSD-TLVAVGDLVNKGPDSFGVVRLLKRL-----------GA-----Y--------------------------SVLGNHDAKLLKLVKK-----L-----------------------SLA--------------PLAQSIPTDV----------ETYLSQLP----HII--R----I----PAHNVM-VAHAGL-----------------------HPQR---P----V-------------D---------------R-------Q-----------------YE-------DE-VT-TMRNL------------------------I-----------E---------------KVTLTATEETNDGGKPWAS---------------------------MW------RG-------------PE------TV-VFGHDA-RRGLQ----------E--------Q------------Y-KPLAIGLDSRCVY----G----G-----RLSAAVFPGGCII------------
121 Fugue 72.0125% -95 - C1 -2QJC ? A:[8-249] ------------------------------------------------------YANVVTLPNVTGRVIIVGDIHGCRAQLEDLLRAV-------S--FK-------------------Q---------GSD-TLVAVGDLVNKGPDSFGVVRLLKRL-----------GA-----Y--------------------------SVLGNHDAKLLKLVKK-----LS-------------------------------------LAPLAQSIPTDV----------ETYLSQLP----HII--RI---P----A--HNVMVAHAGLHP---------------------QRPV-D-R----Q-------------Y---------------E-------D-----------------EV-------TTMRN-LIEKV------------------------T-----------L---------------T-----------------A---------------------------TE------ETNDGGKPWASMWRGPE------TV-VFGHDA-RRGLQEQYKP----LA-------IG--------------------LDSRCVY----G----G-----RLSAAVFPGGCIISVPGWNG-----
101 HHSearch 71.3527% -94 - C1 -2DFJ APAH_SHIFL A:[2-267] ------------------------------------------------------------------ATYLIGDVHGCYDELIALLH---------K--VE-------------------FTP-------GKD-TLWLTGDLVARGPGSLDVLRYVKSLG---------DSV-----R--------------------------LVLGNHDLHLLAVFAG-----I-------SRNKPK-----DRLT-PLLE----------------APDADEL----------LNWLRRQP----LLQ--I----D----EEKKLV-MAHAGI-----------------------TPQW---D----L-------------Q---------------T-------AKECARDVEAVLSSDSYPFF-------LD-AM-YGDMPNNWSPELRGLGRLRFITNAFTRMRF-----------C---------------F-----------------PNGQLDMYSKESPEEAPAPLKPWFAIPGPV------AE-------------EY------SI-AFGHWA-SLEG-----------K--------G------------T-PEGIYALDTGCCW----G----G-----SLTCLRWEDKQYFVQP---------
1 PsiBlast_PDB 70.0328% -74 - C1 -1G5B PP_LAMBD A:[13-217] -----------------------------------------------------------------RNIWVVGDLHGCYTNLMNKLD---------TIGFD-------------------N---------KKD-LLISVGDLVDRGAENVECLELITFPW--F-----RA-----------------------------------VRGNHEQMMIDGLSE-----RGNVNHWLLNGGGW-----------FFNLDYDKEILAKALAHKA-DELPLI----------IELVSK----------------D----K--KYV-ICHADY-----------------------PFDE-Y-E----FG------------K---------------P-------V-----------------DH-------QQ-VI-WNRER------------------------I-----------S---------------N-----------------S---------------------------QNGIVKEIKG-------------AD------TF-IFGHTPAVKPLKF----------------------------------ANQMYIDTGAVF----C----G-----NLTLIQVQ-----------------
103 HHSearch 69.4920% -92 * C1 *2Z72 ? A:[70-326] ----------------------------------------------------------------IKKVVALSDVHGQYDVLLTLLK---------K--QK-------------------IIDSDGNWAFGEG-HMVMTGDIFDRGHQVNEVLWFMYQLD--QQARDAGGMV-----H--------------------------LLMGNHEQMVLGGDLR-----YV----H-QRYDIA-----TTLINRPYN--------------KLYSADTEI----------GQWLRSKN----TII--K----I----N--DVL-YMHGGI-----------------------SSEW-I-SRELTL-------------DKAN------------ALYRANVDASKKSLKAD---------DLLNFLFFGNG-PT-WYRGY------------------------F-----------S---------------ETFTE-------------AELDTIL---------------------QH------FN-------------VN------HI-VVGHTS-QERVL----------G--------L------------F-HNKVIAVDSSIKV----G----K-----SGELLLLENNRLIRG----------
107 HHSearch 61.6121%-100 - C1 -3RQZ ? A:[3-192] ----------------------------------------------------------------AMRILIISDVHANLVALEAVLS---------D--AG-----------------------------RVD-DIWSLGDIVGYGPRPRECVELVRVL----------APN-----I--------------------------SVIGNHDWACIGRLSL-----D----------NPV-----ARFA-SYWTTM--------QLQ-------AEH----------LQYLESLP----NRM--I----D----G--DWT-VVHGSP-----------------------RHPI--------W-------------E---------------Y-------------------------------------IY-NARIA------------------------A-----------L---------------N-----------------F---------------------------PA------FD-------------TP------LC-FVGHTH-VPLYIREDEALSNVAPHHPNDGEVL-----------DV-SSGRYIINPGAVG----------------------------------------
105 HHSearch 59.7718% -74 - C1 -1FJM PP1A_RABIT A:[57-288] -----------------------------------------------------------------APLKICGDIHGQYYDLLRLFE---------Y--GGF------------------P---------PES-NYLFLGDYVDRGKQSLETICLLLAYKIKY-----PENF-----F--------------------------LLRGNHECASINRIYG-----F--------Y---D-----ECKR-RYN-----------------IKLWKTF----------TDCFNCLP----IAA--I----VD---E--KIF-CCHGGL-----------------------SPDL-Q-S----M-------------EQIRRIMRPTDVPD--Q-------G-----------------LL-------CD-LL-WSDPD------------------------KDVQGW------G---------------ENDRGVSFTFG-------AEVVAKFL--------------------HK------HD-------------LD------LI-CRAHQV-VEDGY----E-----F--------F------------A-KRQLVTLFSAPNY----CGEFDN-----AGAMMSVDET---------------
122 Fugue 58.0220% -76 - C1 -1V73 ? A:[6-336] TEFDGPYVITPISGQSTAYWICDNRLKTTSIEKLQVNRPEHCGDLPETKLSSEIKQIMPDTYLGIKKVVALSDVHGQYDVLLTLLKKQKIIDSDGN--WA-------------------F---------GEG-HMVMTGDIFDRGHQVNEVLWFMYQLD--Q-----QARDAGGMVH--------------------------LLMGNHEQMVLG--------------------GDL-----RYVH-QRYDIATTLINRP---YNKLYGADTEI----------GQWLRSKN----TII--K----I----N--DVL-YMHGGISSEWISRELTLDKANALYRANVDASKK-S-L----K-------------A---------------D-------D-----------------LL-------NF-LF-FGNGP------------------------T-----------W---------------Y-----------------R---------------------------GY------FS----------------------E-TFTEAE-LDTILQHFNV----NH-------IVVGHTSQERVLGLF-HNKVIAVDSSIKV----G----K-----SGELLLLENNRLIRGLYDGTRETLQ
3 PsiBlast_PDB 56.1428%-102 - C3 -2DFJ APAH_SHIFL A:[4-123] --------------------------------------------------------------------YLIGDVHGCYDELIALLH---------KVEFT-------------------P---------GKD-TLWLTGDLVARGPGSLDVLRYVKSLG--D-----SVRL-----V--------------------------L--GNHDLHLL-----------------------------AVFA-GISRNKPKDRLTPLLEAP----DADEL----------LNWLRRQP----LLQIDE----E----K--KLV-MAHAGI------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
112 HHSearch 54.5720%-115 - C1 -1S3L P936_METJA A:[26-185] -----------------------------------------------------------------MKIGIMSDTHDHLPNIRKAIE---------I--FND------------------E---------NVE-TVIHCGDFVSLF-----VIKEFENLN---------ANI-----I--------------------------ATYGNNDGERCKLK------------EW-LK--------------DINEE-------------------NII----------DDFISV-------EI--D----D----L--KFF-ITHGHH-----------------------QSVL-E---------------------------------------------------------------------------M-AIK------------------------------------------------------S-----------------------------------------------------GL-------------YD------VV-IYGHTH-ERVF--------------------E------------E-VDDVLVINPGECC----G----YLTGIPTIGILDTEKKEY-------------
123 Fugue 54.4021% -73 - C1 -2DFJ APAH_SHIFL A:[2-268] ------------------------------------------------------------------ATYLIGDVHGCYDELIALLHKV-------E--FT-------------------P---------GKD-TLWLTGDLVARGPGSLDVLRYVKSLG--D-----SVRL-----VLGNHDLHLLAVFAGISRNKPKDRLTPLLEAPDADELLNWLRRQPLLQIDEEKKLVMAHAGITPQWDLQTA-KECARDVEAVLSSDSYPFFLDAMYGDMPNNWSPELRGLGRLRFIT----NAF--T----R----M--RFC-FPNGQL-----------------------DMYS-K-E----S-------------P---------------E-------E-----------------AP-------AP-LKPWFAIP----------------------------------------------------------------------G---------------------------PV------AE-------------EY------SI-AFGHWA-SLE-GKGTPE----GI-------YA--------------------LDTGCCW----G----G-----SLTCLRWEDKQYFVQPS--------
109 HHSearch 54.0517% -85 - C1 -3QFM ? A:[11-194] ----------------------------------------------------------------MTKIALLSDIHGNTTALEAVLA---------D--ARQ------------------L---------GVD-EYWLLGDILMPGTGRRRILDLLDQL----------PIT-----A--------------------------RVLGNWEDSLWHGVRK-----EL---DS--TRPSQ----------RYLLRQC---------QYVLEEISLEE----------IEVLHNQP----LQI--HRQFGD----L--TVG-ISHHLP-----------------------DKNW-G-R----E-------------L---------------I-------H-----------------TG-------KQ-EE--FDRL------------------------V-----------T---------------H-----------------------------------------------------PP-------------CD------IA-VYGHIH-QQLL--------------------R------------YGTGGQLIVNPGSIG----------------------------------------
104 HHSearch 54.0117% -74 - C1 -3H63 PPP5_HUMAN A:[60-292] -----------------------------------------------------------------EKITVCGDTHGQFYDLLNIFE---------L--NG-------------------LPS-------ETN-PYIFNGDFVDRGSFSVEVILTLFGFKL-LY----PDHF-----H--------------------------LLRGNHETDNMNQIYG-----F--------E---G-----EVKA-KYT-----------------AQMYELF----------SEVFEWLP----LAQ--C----IN---G--KVL-IMHGGL-----------------------FSED-GVT----LDDIRKIERNRQPPD---------------S-------G-----------------PM-------CD-LL-WSDPQ------------------------P-----------QNGRSISKRGVSCQFGP-----------------DVTKAFL---------------------EE------NN-------------LD------YI-IRSHEV-KAEGY----E-----V--------A------------H-GGRCVTVFSAPNY----CDQMGN-----KASYIHLQGS---------------
108 HHSearch 53.7119% -58 - C1 -1AUI PP2BA_HUMAN A:[83-422] -----------------------------------------------------------------APVTVCGDIHGQFFDLMKLFE---------V--GGS------------------P---------ANT-RYLFLGDYVDRGYFSIECVLYLWALKILY-----PKTL-----F--------------------------LLRGNHECRHLTEYFT-----F--------K---Q-----ECKI-KYS-----------------ERVYDAC----------MDAFDCLP----LAA--L----MN---Q--QFL-CVHGGL-----------------------SPEI-N-T----L-------------DDIRKLDRFKEPPA--Y-------G-----------------PM-------CD-IL-WSDPL------------------------EDFGNEKTQEHFT---------------H-----------------NTVRGCSYFYSYPAVCEFL---------QH------NN-------------LL------SI-LRAHEA-QDAGYRMYRK----SQ--------T-----------TG-FPSLITIFSAPNYLDVYN----N-----KAAVLKYENN---------------
32 PsiBlast_CBE 51.9734%-104 - C3 -2NYM PP2AA_HUMAN F:[50-118] ------------------------------------------------------------------PVTVCGDVHGQFHDLMELFR---------I--GG-------------------K---------SPDTNYLFMGDYVDRGYYSVETVTLLVALKVRY-----RERI-----T--------------------------ILRGNHE-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18 PsiBlast_PDB 51.9034%-102 - C3 -4I5N PP2AA_HUMAN C:[53-121] ------------------------------------------------------------------PVTVCGDVHGQFHDLMELFR---------I--GG-------------------K---------SPDTNYLFMGDYVDRGYYSVETVTLLVALKVRY-----RERI-----T--------------------------ILRGNHE-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8 PsiBlast_PDB 51.6834%-112 - C3 -2QJC ? A:[21-103] -------------------------------------------------------------------VIIVGDIHGCRAQLEDLLRAV-------S--FK-------------------Q---------GSD-TLVAVGDLVNKGPDSFGVVRLLKRL-----------GA-----Y--------------------------SVLGNHD-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------