@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0673: (2016-03-17 )
MYIEIYTVNGESIRLDDDAKINNISIHELSKADLKNLFNEKCIELTKYDLTYFINTNQVNWFLVSEGIH
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.-----------------...----.-....10-.....-------...--20.---......-..-----30........40....------------...----.50........60--.........--------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
-----------------
Y
I
E
----
I
-
Y
T
VNG
E
-
S
I
RLD-------DDA--K-I---N
N
I
S
I
H
-EL-----
S
K
A
D
L
K
N
L
F
N
E
K
C
I
E
L------------TK
Y
----
D
L
T
Y
F
I
NTN
Q
V
N
---
W
F
L
VSEGIH--------------------------------------------------------------------------------------------------------------------------------
31
Fugue
77.37
29%
-44
- C1 -
2JV8
-
?
A:
[1-73]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
-----------------
T
H
H
----
T
-
E
V
F
E
G
G
-
T
I
D
I
E
-------
D
D
T
S
L
T
-
I
---
N
G
K
E
I
S
-
Y
V
-----
H
D
A
-
V
K
N
K
W
S
S
R
Y
L
P
Y
------------
T
Q
Y
D
S
L
L
D
L
A
R
A
I
I
R
D
T
V
E
---
F
S
G
V
K
E
G
S
---------------------------------------------------------------------------------------------------------------------------------
29
Fugue
70.90
20%
-47
- C3 -
2JNA
-
?
A:
[1-103]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
KKRI
I
A
A
A
LL
A
T
V
A
S
F
S
T
L
A
----
A
-
E
Q
V
S
K
Q
-
E
I
S
H
F
-------
K
L
V
--
K
-
V
---
G
T
I
N
V
S
-
Q
S
G
GQIS
S
P
S
D
L
R
E
K
L
S
E
L
A
D
A
K
G-----------
G
K
Y
----
Y
H
I
I
A
A
R
E
H
G
P
N
---
F
E
A
V
A
E
V
Y
N
D
ATKLEHHHHH---------------------------------------------------------------------------------------------------------------------
23
Fugue
63.42
21%
-47
- C4 -
3FC7
-
?
A:
[142-241]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SDSP
D
G
I
V
-----------------
H
L
T
TNGT
I
-
L
S
V
N
P
S
M
A
G
R
L
G
-------
A
D
P
--
D
-
T
LVG
Q
Q
L
S
A
V
M
D
S
-----
E
A
A
N
Q
R
L
E
A
G
K
S
A
V
E
N
G
T
A
T
R
S
E
D
A
V
GG
R
H
Y
----
H
N
Q
Y
I
P
V
D
S
H
R
K
SD
T
F
Q
L
V
S
R
D
I
T
--------------------------------------------------------------------------------------------------------------------------------
26
Fugue
63.30
19%
-60
* C3 *
1BT0
5
A:
[1-73]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
-----------------
L
I
K
----
V
-
K
T
L
T
G
K
-
E
I
E
I
D
I
E
PTDT
I
D
R
I
--
K
-
E
---
R
V
E
E
K
E
-
G
I
-----
P
P
V
Q
Q
R
L
I
Y
A
G
K
Q
L
A
D
------------
D
K
T
----
A
K
D
Y
N
I
E
G
G
S
V
L
---
H
L
V
L
A
L
-----------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
60.78
27%
-76
- C4 -
2KDD
-
BOREA_HUMAN
A:
[229-265]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
----
V
-
P
V
G
G
G
E
-
S
L
R
L
L
-------
A
S
---
D
-
L
---
Q
R
H
S
I
A
-
Q
L
-----
D
P
E
A
L
G
N
I
K
K
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
59.44
19%
-64
- C4 -
2HBP
-
A:
[24-56]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
A
K
G
-
K
I
H
L
H
K
------
A
N
G
--
V
-
K
---
I
A
V
A
A
D
-
K
L
-----
S
N
E
D
L
A
Y
V
E
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
51.57
24%
-78
- C4 -
1VQ0
-
HSLO_THEMA
A:
[254-274]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
-
V
L
-----
D
K
K
E
L
E
D
M
R
K
E
G
K
G
E
V
------------
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
50.80
20%
34
- C4 -
4R29
2
?
A:
[21-220]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------H
V
V
K
N
I
-----------------
Y
P
E
----
I
K
H
D
Y
F
N
E
-
S
P
N
I
Y
-------
D
K
K
--
Y
-
I
---
S
G
I
T
---
R
V
-----
A
E
L
K
Q
E
E
F
V
N
E
K
A
R
R
F
------------
S
Y
M
----
K
T
M
Y
--
S
V
C
P
E
A
---
F
E
P
I
S
R
N
E
A
ST
P
E
G
S
W
L
T
V
I
S
GKRP
M
G
Q
F
S
V
DSLYN
P
D
L
H
A
L
C
E
LPD
I
C
C
K
I
F
P
K
ENNDF
L
Y
I
V
V
V
Y
R
NDS
P
L
G
E
Q
R
A
N
R
F
I
E
L
Y
N
I
K
R
D
I
M
Q
E
L
N
Y
ALPEL
K
A
V
K
S
E
M
I
I
A
R
E
M
G
E
I
F
SYM
P
G
E
I
D
S
Y
M
K
Y
I
N
N
K
L
18
HHSearch
49.80
21%
-63
- C4 -
2YH0
-
U2AF2_HUMAN
A:
[153-171]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
---
G
N
I
P
-
F
-
G
I
-----
T
E
E
A
M
M
D
F
F
N
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
48.58
20%
12
- C4 -
1JUN
1
JUN_HUMAN
A:
[1-43]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
G
G
R
-
I
A
R
L
E
-------
E
K
V
--
K
------
T
L
K
A
Q
-
N
S
-----
E
L
A
S
T
A
N
M
L
R
E
Q
V
A
Q
L
------------
K
Q
K
----
V
M
N
Y
----------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
48.03
26%
-64
- C4 -
1Y0N
1
Y3463_PSEAE
A:
[5-30]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
P
H
D
-
L
L
-----
E
A
D
T
L
N
N
L
L
E
D
F
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
47.31
18%
21
- C4 -
4OJK
-
KGP2_RAT
C:
[10-46]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
E
Y
H
-------
L
K
E
--
L
-
R
---
E
Q
L
A
K
Q
-
T
V
-----
A
I
A
E
L
T
E
E
L
Q
S
K
C
I
Q
L
------------
N
K
L
----
Q
-------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
47.02
23%
-5
- C4 -
1P1D
-
A:
[178-199]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
--
A
-
I
---
D
N
I
R
L
D
-
S
C
-----
S
M
E
D
A
V
Q
I
L
Q
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
46.43
21%
-3
* C4 *
4WOL
3
TYOBP_HUMAN
A:
[1-33]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
---
S
T
V
S
P
G
-
V
L
-----
A
G
I
V
V
G
D
L
V
L
T
V
L
I
A
L
------------
A
V
Y
----
F
L
G
R
L
---------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
46.38
15%
-64
- C3 -
3S6G
2
?
A:
[25-460]
A
P
G
V
R
Q
T
I
V
Q
L
L
S
H
MRD
G
K
E
I
R
E
Y
L
H
R
F
SGIDQERF
A
V
I
K
V
G
G
A
V
I
Q
DD
L
P
G
L
A
S
A
L
A
F
L
Q
T
V
GLTPVVVHGGG
P
Q
L
D
A
A
L
E
A
ADIPTERVDG
L
R
V
T
R
DEAM
P
I
I
R
D
T
L
T
Q
A
N
L
A
L
V
D
A
I
R
D
A
G
G
R
A
A
A
VPRGV
F
E
A
D
IVDADKLGRVGEPRHIHL
D
L
V
G
S
A
A
R
A
GQA
A
I
L
A
C
L
G
E
T
PDG
T
L
V
N
I
N
A
D
V
A
V
R
A
L
V
H
A
LQPY
K
V
V
F
L
T
GTG
G
L
L
D
EDGDILSSINLATD
F
G
D
L
M
Q
ADWVN
G
G
M
R
L
K
L
E
E
I
K
R
L
L
D
D
L
PLS
S
S
V
S
I
T
R
PSE
L
-----------------
A
R
E
----
L
-
F
T
H
A
G
S
-
G
T
L
I
R
-------
R
G
E
--
R
M
V
---
A
T
D
D
K
S
-
S
L
-----
D
L
G
R
L
D
N
L
V
K
A
A
---
F
------------
G
R
P
----
A
V
E
G
Y
W
D
R
L
R
V
D
---
R
A
F
V
T
E
S
Y
R
A
A
A
I
T
T
R
L
DGWVYLD
K
F
A
V
L
D
D
A
R
G
E
G
L
G
R
T
V
W
N
R
M
V
D
Y
A
P
Q
L
I
W
R
S
R
TNNPV
N
G
F
Y
F
E
E
CD
G
A
V
R
R
DE
W
T
V
F
W
R
G
EMG
P
V
E
V
A
D
V
V
E
K
A
F
A
LPPTLEAP----------------------------
9
HHSearch
45.04
38%
24
* C5 *
3KZD
-
TIAM1_HUMAN
A:
[897-912]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
-
I
---
N
N
R
A
A
D
-
A
L
-----
N
S
S
M
L
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
39.20
10%
-25
- C4 -
2KHV
-
?
A:
[38-58]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
-
I
---
G
P
L
S
V
Q
-
D
V
-----
D
T
K
L
I
M
K
V
L
D
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
37.33
54%
21
- C6 -
1HBN
1
MCRG_METTM
C:
[153-165]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
V
H
G
H
-
S
L
R
L
D
-------
E
D
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
37.19
50%
54
- C2 -
2JPP
1
?
A:
[8-21]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
G
E
-
S
I
N
I
G
-------
D
D
I
--
T
-
I
---
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
36.30
15%
13
- C4 -
1BAZ
-
RARC_BPP22
A:
[21-47]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
R
-------
K
V
A
--
E
-
E
---
N
G
R
S
V
N
-
S
E
-----
I
Y
Q
R
V
M
E
S
F
K
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------