@TOME V2.3
(Nov 2016)

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Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
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Values color: [ Good | Correct | Middling | Bad ]Sequence color : MutatedHelixStrandConserved

Query sequence : Lmo0681: (2016-03-17 )
MGKHLVEKMEIFKGNSKREIHKKIQLVTNEPYKITDERVTKLGIFKKQYEVTAVIMSEVAIADGRMDFQETFQKSVVKTRPKTDDLLKKEKLLEMLAAGAELAQSTPLLEERKTQEEELSSMRLELAALNRELAVKMREEREQNSDFVKFLKGRGISDTYVADFMQAGRKQFKQVETAHLDDITDWFVPYLSGKLAVEDSFDLSGHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQETNLPVLYMTDGQNITENIFRPKSRWLAERFVGTDRRQVVE

Atome Classification :

(23 SA) .........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170...----.----.---..180.-.----.....190.....-.----.----200----.---.-.......210.......220......-.230.-.......240.......250.......260...---...----.---270---.-----.-----.-.-.....280.......290.......300.........310.------.------.....320.......330.......340-.-.......350.......360.......370.......380......-.390.......400.....
(Atome) (Ident) (Tito) (Num) (Ligand) (Uniprot) MGKHLVEKMEIFKGNSKREIHKKIQLVTNEPYKITDERVTKLGIFKKQYEVTAVIMSEVAIADGRMDFQETFQKSVVKTRPKTDDLLKKEKLLEMLAAGAELAQSTPLLEERKTQEEELSSMRLELAALNRELAVKMREEREQNSDFVKFLKGRGISDTYVADFMQAGRKQFKQV----E----T---AHLDDI-T----DWFVPYLSGKLAV-E----D----S------F---D-LSGHRIISLIGQTGVGKTTTLVKLGW-QL-LK-QNRTVGFITTDTFRSGAVEQFQGYADKLDVELI---VAT----S---P-----A-----E-----L-E-EAVQYMTYVNCVDHILIDTVGRNYLA--EESVSEISAYTDV------V------HPDLTCFTFSSGMKSADVMTILPKLA-E-I-PIDGFIITKMDETTRIGDLYTVMQETNLPVLYMTDGQNITENIFRP-KSRWLAERFVGTDRRQVVE
38 HHSearch 93.6327%-101 - C7 -2PX0 FLHF_BACSU A:[39-296] --------------------------------------------------------------------------------------------------------------------------------------------PEPLRKAEKLLQETGIKESTKTNTLKKLLRFSVEA----G----G---LTEENV-V----GKLQEILCDMLPS-A----D----K------WQ--E-PIHSKYIVLFGSTGAGKTTTLAKLAA-ISMLE-KHKKIAFITTDTYRIAAVEQLKTYAELLQAPLE---VCY----T---K-----E-----E-----F-Q-QAKELF---SEYDHVFVDTAGRNFKD--PQYIDELKETIPF------E------SSIQSFLVLSATAKYEDMKHIVKRFS-S-V-PVNQYIFTKIDETTSLGSVFNILAESKIGVGFMTNGQNVPEDIQTV-SPLGFVRMLCR--------
42 HHSearch 89.0821%-101 - C7 -2XXA SRP54_ECOLI A:[28-313] --------------------------------------------------------------------------------------------------------------------------------------------KDTLREVRMALLEADVALPVVREFINRVKEKAVGH----E----V---NKSLTP-GQEFVKIVRNELVAAMGE-E----NQ---T------LNL-A-AQPPAVVLMAGLQGAGKTTSVGKLGK-FL-REKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFF---PSDVGQ-K---P-----V-----DI----V-N-AALKEAK-LKFYDVLLVDTAGRLHVD--EAMMDEIKQVHAS------I------NPVETLFVVDAMTGQ-DAANTAKAFNEA-L-PLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEK-TEALEPF-HPDRIASRILGMG------
45 HHSearch 88.5524% -85 - C7 -3E70 ? C:[53-324] --------------------------------------------------------------------------------------------------------------------------------------------DKALDELEIDLLEADVALEVVDALREKIKQKLVGK----K----VRIG--GKII-E----EAVKEAVSEILET-S----R----RIDLIEEIR--K-AEKPYVIMFVGFNGSGKTTTIAKLAN-WL-KN-HGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVI---KHS----YGADP-----AA----V-----A-Y-DAIQHAK-ARGIDVVLIDTAGRSETN--RNLMDEMKKIARV------T------KPNLVIFVGDALAGN-AIVEQARQFNEA-V-KIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQG-YDDLRPF-EKEWFLERIFG--------
44 HHSearch 87.5621% -93 - C7 -2FFH SRP54_THEAQ A:[28-306] --------------------------------------------------------------------------------------------------------------------------------------------KATLREIRRALMDADVNLEVTRDFVERVREEALGK----QVLE-S---LTPAEVIL----ATVYEALKEALGG-E----A----RL-----P---V-LKDRNLWFLVGLQGSGKTTTAAKLAL-YY-KG-KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVL---EVMDGE-S---P-----E-----S-----I-R-RRVEEKARLEARDLILVDTAGRLQID--EPLMGELARLKEV------L------GPDEVLLVLDAMTGQ-EALSVARAFDEK-V-GVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSE-KPEGLEPF-YPERLAGRILGMG------
49 HHSearch 87.0022% -81 - C7 -3DM5 SRP54_PYRFU A:[29-316] --------------------------------------------------------------------------------------------------------------------------------------------KELVRDIQRALIQADVNVRLVLQLTREIQRRALEE----KPPAGI---SKKEHI-I----KIVYEELTKFLGT-EA---K----P------I---EIKEKPTILLMVGIQGSGKTTTVAKLAR-YF-QK-RGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVF---GNP----Q---E-----KDAIK-L-----A-K-EGVDYFK-SKGVDIIIVDTAGRHKED--KALIEEMKQISNV------I------HPHEVILVIDGTIGQQAYNQALAFKE-A-T-PIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGTGEKID-DIEPF-DPPRFVSRLLGLG------
40 HHSearch 85.9621% -99 - C7 -2OG2 CFTSY_ARATH A:[88-359] ---------------------------------------------------------------------------------------------------------------------------------------------RVLDELEEALLVSDFGPKITVRIVERLREDIMSG----K----L---KSGSEI-K----DALKESVLEMLAK-------KTELQ------L---G-FRKPAVIMIVGVNGGGKTTSLGKLAH-RL-KN-EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIV---VAE----G---DKAKAAT-----V-----L-S-KAVKRGK-EEGYDVVLCDTSGRLHTN--YSLMEELIACKKA------VGKIVSGAPNEILLVLDGNTGLNMLPQAREFNE-V-V-GITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV-EDLQPF-DPEAFVNAIFS--------
39 HHSearch 84.4621% -93 - C7 -3B9Q CFTSY_ARATH A:[30-302] --------------------------------------------------------------------------------------------------------------------------------------------DRVLDELEEALLVSDFGPKITVRIVERLREDIMSG----K----L---KSGSEI-K----DALKESVLEMLAK--SKTEL----Q------L---G-FRKPAVIMIVGVNGGGKTTSLGKLAH-RL-KN-EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIV---VAE--------------KAKAATV-----L-S-KAVKRGK-EEGYDVVLCDTSGRLHTN--YSLMEELIACKKAVGKIVSG------APNEILLVLDGNTGLNMLPQAREFNE-V-V-GITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV-EDLQPF-DPEAFVNAIFS--------
41 HHSearch 83.3722% -88 - C7 -3KL4 - SRP54_SULSO A:[25-315] --------------------------------------------------------------------------------------------------------------------------------------------DEFIKDLQKSLISSDVNVKLVFSLTAKIKERLNKE----KPPSVL---ERKEWF-I----SIVYDELSKLFGG-D----K----E------PNVNP-TKLPFIIMLVGVQGSGKTTTAGKLAY-FY-KK-RGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVY---GEP----NNQNP-----I-----E-----IAK-KGVDIFV-KNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDV------L------KPDDVILVIDASIGQK-AYDLASRFHQA-S-PIGSVIITKMDGTAKGGGALSAVVATGATIKFIGTGEKI-DELETF-NAKRFVSRILGMG------
51 HHSearch 82.9422% -75 - C7 -2V3C - SRP54_METJA C:[29-320] ---------------------------------------------------------------------------------------------------------------------------------------------EVIKDIQRALIQADVNVKLVLKMSKEIERRALEEKTPKG----L---SKKEHI-I----KIVYEELVKLLGEEA----K----K------LEL-N-PKKQNVILLVGIQGSGKTTTAAKLAR-YI-QK-RGLKPALIAADTYRPAAYEQLKQLAEKIHVPIY---GDETRTKS---P-----V-----DI----V-K-EGMEKF---KKADVLIIDTAGRHKEE--KGLLEEMKQIKEI------T------NPDEIILVIDGTIGQQAGIQ-AKAFK-EAVGEIGSIIVTKLDGSAKGGGALSAVAETKAPIKFIGIGEGI-DDLEPF-DPKKFISRLLGMG------
47 HHSearch 82.7821% -85 - C7 -2YHS FTSY_ECOLI A:[226-495] ---------------------------------------------------------------------------------------------------------------------------------------------DLFEELEEQLLIADVGVETTRKIITNLTEGASRK----Q----L---RDAEAL-Y----GLLKEEMGEILAK-V----DEPL-N------V---E-GKAPFVILMVGVNGVGKTTTIGKLAR-QF-EQ-QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVI---AQH----T---GADSA-S-----V-----I-F-DAIQAAK-ARNIDVLIADTAGRLQNK--SHLMEELKKIVRV------MKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHE-A-V-GLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERI-EDLRPF-KADDFIEALFAR-------
46 HHSearch 82.6219% -84 - C7 -1VMA ? A:[46-306] ---------------------------------------------------------------------------------------------------------------------------------------------ETREELEELLIQADVGVETTEYILERLEEKDG-------------------DA-L----ESLKEIILEILNF-D----TKL--N------V---P-PEPPFVIMVVGVNGTGKTTSCGKLAK-MF-VD-EGKSVVLAAADTFRAAAIEQLKIWGERVGATVI---SHS----E---G-----A-----DPAAVAF-D-AVAHALA--RNKDVVIIDTAGRLHTK--KNLMEELRKVHRV------VKKKIPDAPHETLLVIDATTGQNGLVQA-KIFKEA-V-NVTGIILTKLDGTAKGGITLAIARELGIPIKFIGVGEK-AEDLRPF-DPEAFVEVLLSE-------
1 PsiBlast_PDB 82.4634%-102 - C7 -2PX0 FLHF_BACSU A:[106-282] -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KYIVLFGSTGAGKTTTLAKLAAISM-LE-KHKKIAFITTDTYRIAAVEQLKTYAELLQAPLE---VCY----T---K-----E-----E-----F-Q-QAKELFSEY---DHVFVDTAGRNFKD--PQYIDELKETIPF------E------SSIQSFLVLSATAKYEDMKHIVKRFS-S-V-PVNQYIFTKIDETTSLGSVFNILAESKIGVGFMTNGQNVPEDI-----------------------
26 PsiBlast_CBE 81.9334%-109 - C7 -2PX0 FLHF_BACSU F:[106-282] -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KYIVLFGSTGAGKTTTLAKLAAISM-LE-KHKKIAFITTDTYRIAAVEQLKTYAELLQAPLE---VCY----T---K-----E-----E-----F-Q-QAKELFSEY---DHVFVDTAGRNFKD--PQYIDELKETIPF------E------SSIQSFLVLSATAKYEDMKHIVKRFS-S-V-PVNQYIFTKIDETTSLGSVFNILAESKIGVGFMTNGQNVPEDI-----------------------
21 PsiBlast_CBE 81.7334%-103 - C7 -3SYN FLHF_BACSU D:[106-282] -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KYIVLFGSTGAGKTTTLAKLAAISM-LE-KHKKIAFITTDTYRIAAVEQLKTYAELLQAPLE---VCY----T---K-----E-----E-----F-Q-QAKELFSEY---DHVFVDTAGRNFKD--PQYIDELKETIPF------E------SSIQSFLVLSATAKYEDMKHIVKRFS-S-V-PVNQYIFTKIDETTSLGSVFNILAESKIGVGFMTNGQNVPEDI-----------------------
3 PsiBlast_PDB 81.6734%-101 - C7 -3SYN FLHF_BACSU A:[106-282] -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KYIVLFGSTGAGKTTTLAKLAAISM-LE-KHKKIAFITTDTYRIAAVEQLKTYAELLQAPLE---VCY----T---K-----E-----E-----F-Q-QAKELFSEY---DHVFVDTAGRNFKD--PQYIDELKETIPF------E------SSIQSFLVLSATAKYEDMKHIVKRFS-S-V-PVNQYIFTKIDETTSLGSVFNILAESKIGVGFMTNGQNVPEDI-----------------------
2 PsiBlast_PDB 81.5534%-110 - C7 -2PX3 FLHF_BACSU A:[106-282] -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KYIVLFGSTGAGKTTTLAKLAAISM-LE-KHKKIAFITTDTY--AAVEQLKTYAELLQAPLE---VCY----T---K-----E-----E-----F-Q-QAKELFSEY---DHVFVDTAGRNFKD--PQYIDELKETIPF------E------SSIQSFLVLSATAKYEDMKHIVKRFS-S-V-PVNQYIFTKIDETTSLGSVFNILAESKIGVGFMTNGQNVPEDI-----------------------
30 PsiBlast_CBE 81.5234% -99 - C7 -2PX0 FLHF_BACSU B:[106-282] -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KYIVLFGSTGAGKTTTLAKLAAISM-LE-KHKKIAFITTDTYRIAAVEQLKTYAELLQAPLE---VCY----T---K-----E-----E-----F-Q-QAKELFSEY---DHVFVDTAGRNFKD--PQYIDELKETIPF------E------SSIQSFLVLSATAKYEDMKHIVKRFS-S-V-PVNQYIFTKIDETTSLGSVFNILAESKIGVGFMTNGQNVPEDI-----------------------
25 PsiBlast_CBE 81.4534%-111 - C7 -2PX0 FLHF_BACSU G:[106-282] -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KYIVLFGSTGAGKTTTLAKLAAISM-LE-KHKKIAFITTDTYRIAAVEQLKTYAELLQAPLE---VCY----T---K-----E-----E-----F-Q-QAKELFSEY---DHVFVDTAGRNFKD--PQYIDELKETIPF------E------SSIQSFLVLSATAKYEDMKHIVKRFS-S-V-PVNQYIFTKIDETTSLGSVFNILAESKIGVGFMTNGQNVPEDI-----------------------
23 PsiBlast_CBE 81.3834%-102 - C7 -3SYN FLHF_BACSU B:[106-282] -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KYIVLFGSTGAGKTTTLAKLAAISM-LE-KHKKIAFITTDTYRIAAVEQLKTYAELLQAPLE---VCY----T---K-----E-----E-----F-Q-QAKELFSEY---DHVFVDTAGRNFKD--PQYIDELKETIPF------E------SSIQSFLVLSATAKYEDMKHIVKRFS-S-V-PVNQYIFTKIDETTSLGSVFNILAESKIGVGFMTNGQNVPEDI-----------------------
27 PsiBlast_CBE 81.3234%-113 - C7 -2PX0 FLHF_BACSU E:[106-282] -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KYIVLFGSTGAGKTTTLAKLAAISM-LE-KHKKIAFITTDTYRIAAVEQLKTYAELLQAPLE---VCY----T---K-----E-----E-----F-Q-QAKELFSEY---DHVFVDTAGRNFKD--PQYIDELKETIPF------E------SSIQSFLVLSATAKYEDMKHIVKRFS-S-V-PVNQYIFTKIDETTSLGSVFNILAESKIGVGFMTNGQNVPEDI-----------------------
22 PsiBlast_CBE 81.2734%-102 - C7 -3SYN FLHF_BACSU C:[106-282] -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KYIVLFGSTGAGKTTTLAKLAAISM-LE-KHKKIAFITTDTYRIAAVEQLKTYAELLQAPLE---VCY----T---K-----E-----E-----F-Q-QAKELFSEY---DHVFVDTAGRNFKD--PQYIDELKETIPF------E------SSIQSFLVLSATAKYEDMKHIVKRFS-S-V-PVNQYIFTKIDETTSLGSVFNILAESKIGVGFMTNGQNVPEDI-----------------------
5 PsiBlast_PDB 80.5830% -79 - C7 -3E70 ? C:[131-324] --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VIMFVGFNGSGKTTTIAKLAN-WL-KN-HGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGA----D---P-----A-----A-----V-AYDAIQH-AKARGIDVVLIDTAGRSETN--RNLMDEMKKIARV------T------KPNLVIFVGDALAGNAIVEQARQFNE-A-V-KIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGYDD--LRPFEKEWFLERIFG--------
4 PsiBlast_PDB 77.9330% -81 - C7 -3DMD ? B:[131-324] --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VIMFVGFNGSGKTTTIAKLAN-WL-KN-HGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGA----D---P-----A-----A-----V-AYDAIQH-AKARGIDVVLIDTAGRSETN--RNLMDEMKKIARV------T------KPNLVIFVGDALAGNAIVEQARQFNE-A-V-KIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGYDD--LRPFEKEWFLERIFG--------