@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0718: (2016-03-18 )
MGNWQQKWESWRDMTAAMQQEIKIEAAEKVTSYIKNDQFEEAINVIRQTENLLNELDFETKMNRVEEQLQAFTSDQEAAKSFEASQLQNIEKPSTKVSFDLSHVKSEAINQFTKRDFNLVDSNDTHMQFLKGNRNFYMDIFNPEESEEYHYANLDEKCQYKNIGFICQNDAAAEIATKLTNEWLETLEAPKKKFLTVNIANLNAMKQNPEVLFQ
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------.........10........20-...-..--....30........40........50...--....--.60.-........70------........80........90..------......----100.......110..--.....120--------...-...-.130.......140..-------.....150..-.....160.------.....-.170-----.....-....180....-.------..190.......200.......210..------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------MG
N
W
Q
Q
K
W
E
S
W
R
D
M
T
A
A
M
Q
Q
--
E
I
K
-
I
E
--
A
A
E
K
V
T
S
Y
I
K
N
D
Q
F
E
E
A
I
N
V
I
R
Q
T
E
N
L
L
N
--EL
D
F
--
E
T
-
K
-
M
N
R
V
E
E
Q
L
Q
A
------FTS
D
Q
E
A
A
K
SF
E
A
S
Q
L
QNIEKP------S
T
K
V
S
F
----
D
L
S
H
V
K
S
E
A
I
N
Q
F
T
K
--RDFNLVDS--------NDT-H
M
Q
-
F
L
KGNR
N
F
Y
M
D
IFNPE-------ESEEYHYANL-DEKCQYKN
I
------
G
F
I
CQ-ND-------
A
A
A
E
I
-
A
T
K
L
T
N
E
W
L
E
T
-
L
------EAPK
K
K
F
L
T
V
N
IANLNAMKQNPEVLFQ------------------------------------------------------------------------------------------
7
PsiBlast_PDB
77.81
26%
-12
- C3 -
4FZS
-
SNX1_HUMAN
A:
[117-200]
-------------------------------------------------------------------------------------------
K
T
W
Q
R
W
Q
D
A
Q
A
T
L
Q
K
----
K
-
R
E
--
A
E
A
R
L
L
W
A
N
K
P
D
K
L
Q
Q
A
K
D
E
I
L
E
W
E
S
R
V
T
Q
Y
E
R
D
F
--
E
R
-
I
-
S
T
V
V
R
K
E
V
I
R
------
F
--
E
K
E
K
S
K
D
F
K
N
H
V
I
K
Y
L
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
76.12
10%
1
* C5 *
3TLQ
7
YDIV_ECOLI
A:
[7-242]
--------------------------------------------------------------------------------------
K
I
F
L
E
N
L
Y
H
S
D
C
Y
F
L
P
I
R
D
N
--
Q
Q
V
-
L
V
--
G
V
E
L
I
T
H
F
S
S
E
D
G
-----
T
V
R
I
P
T
S
R
V
I
A
--
Q
L
T
E
--
E
Q
-
H
-
W
Q
L
F
S
E
Q
L
E
L
------
L
K
S
C
Q
H
F
F
I
Q
H
K
L
F
A
W
L
N
L
T
P
Q
------
V
A
T
L
L
L
----
E
R
D
N
Y
A
-
G
E
L
L
K
Y
P
F
--
I
E
L
L
I
N
E
N
YPHLNEGK
D
N
R
-
G
L
L
-
S
L
S
Q
V
Y
P
L
V
L
G
N
L
G
A
G
NSTM
K
A
V
F
D
G
L
F
T
R
V
M
L
-
D
K
S
F
I
Q
Q
Q
I
------
T
H
R
S
F
-
E
P
-------
F
I
R
A
I
-
Q
A
Q
I
S
P
C
C
N
C
I
-
I
A
G
GIDT
A
E
I
L
A
Q
I
T
P
F
D
F
H
A
L
Q
G
C
L
W
P
A
V
P
I
N
Q
I
T
T
L
V
QR-----------------------------------------------------------------------------------
22
Fugue
74.35
17%
-3
- C4 -
1DVO
-
FINO3_ECOLX
A:
[33-184]
--------------------------------------------------------------------------------------
P
P
K
W
K
V
K
K
Q
K
L
A
E
K
A
A
R
E
A
E
L
T
A
K
K
-
A
Q
--
A
R
Q
A
L
S
I
Y
L
N
L
P
T
L
D
E
A
V
N
T
L
K
P
W
W
P
G
L
------------------------------
F
D
G
D
--------------------------
T
P
R
L
----
L
A
C
G
I
R
D
V
L
L
E
D
V
A
Q
--
R
N
I
P
L
-------------
S
-
H
K
K
-
L
R
R
A
M
K
A
I
T
--------------
R
S
E
S
Y
L
C
A
M
K
-
A
G
A
C
R
Y
D
T
E
------
G
Y
V
T
E
-
H
----------------------
I
S
Q
-
E
------
E
E
V
Y
A
A
E
R
L
D
K
I
R
R
Q
N
R
I
K
A
E
L
Q
A
V
L
D
------------------------------------------------------------------------------------------
21
Fugue
70.89
16%
9
- C4 -
4NNG
-
A:
[1-157]
----------------------------------------------------------------------------------------------
N
L
Y
F
Q
H
M
R
H
F
A
R
--
T
H
A
-
I
G
Q
I
V
A
G
K
V
T
K
L
V
P
---
F
G
A
F
V
R
V
E
E
G
I
E
G
L
V
H
--
I
S
E
L
--
A
E
-
R
H
V
E
V
P
D
Q
V
V
A
V
--------------
G
D
D
A
M
V
K
V
I
D
I
D
L
E
------
R
R
R
I
S
L
----
S
L
K
Q
A
N
E
D
Y
T
E
E
F
D
P
--
A
K
Y
G
M
A
D
S
--------
Y
D
E
-
Q
-------
G
N
Y
I
F
P
E
G
F
D
A
E
----------------------------------------------------------
T
N
E
W
L
E
G
-
F
------
E
K
Q
R
A
E
W
E
A
R
Y
A
E
A
E
R
R
H
K
M
H
T
A
Q
M
E
K
------------------------------------------------------------------------------------------
28
Fugue
67.39
13%
4
- C5 -
2A9F
1
?
A:
[3-388]
LKNQLGQLA
L
E
Q
A
K
T
F
GGK
L
E
V
Q
P
KVDIKT
K
H
D
L
S
I
A
YTPGV
A
S
V
S
S
A
I
A
K
DKTLAYDLTTKKN
T
V
A
V
I
S
DGTAVLGLGDIGPEAA
M
P
V
M
E
G
K
A
A
L
F
K
A
F
A
G
----------
V
D
--
A
I
P
I
V
L
D
T
K
D
T
E
E
I
I
S
I
V
K
A
L
A
P
T
F
G
G
I
N
--
L
E
D
I
--
S
A
P
R
-
C
F
E
I
E
Q
R
L
I
K
E
CH
I
P
V
F
H
D
D
Q
H
G
T
A
I
V
V
L
A
A
I
F
N
S
L
K
L
L
KKSLD
E
V
S
I
V
V
N
G
GG
S
A
G
L
S
I
T
R
K
L
L
A
A
G
A
--
T
K
V
T
V
V
D
K
--------
F
G
I
-----
I
N
E
Q
E
A
A
Q
L
A
P
D
I
A
K
V
-------
T
N
R
E
F
K
S
G
T
L
-
E
D
A
L
E
G
A
D
I
------
F
I
G
V
S
-
A
--------------
P
G
V
L
K
A
E
W
I
S
K
-
M
------
A
---
A
R
P
V
I
F
A
M
A
N
-----
P
I
P
E
I
Y
P
D
E
A
L
E
A
GAY
I
V
G
T
GRSDFPNQINNVLA
F
P
G
I
F
R
G
A
L
D
A
RAKTIT
V
E
M
Q
I
A
A
A
K
G
I
A
S
L
VPDDALSTTNIIPDA
F
K
E
G
V
A
E
I
V
A
KSVRSVVL
23
Fugue
65.21
14%
-8
- C4 -
1K8K
-
ARPC4_BOVIN
F:
[2-167]
---------------------------------------------------------------------------------------------
T
A
T
L
R
P
Y
L
S
A
V
R
A
--
T
L
Q
-
A
A
L
-
C
L
E
N
F
S
S
Q
V
V
E
R
H
N
K
P
E
V
E
V
R
S
S
K
E
L
L
L
Q
--
P
V
T
I
--
S
----------------------
R
N
E
K
E
K
V
L
I
E
G
S
------
I
N
------
S
V
R
V
S
I
----
A
V
K
Q
-
A
D
E
I
E
K
I
L
C
H
--
K
F
M
R
F
M
M
M
--------
R
A
E
-
N
F
F
-
I
L
R
-------------------------------
R
K
P
V
E
G
Y
D
I
------
S
F
L
I
T
-
N
F
-------
H
T
E
Q
M
Y
K
H
K
L
V
D
F
V
I
H
F
-
M
------
E
E
I
D
K
E
I
S
E
M
K
L
S
V
N
A
R
A
R
I
V
A
E
E
F
L
K
N
-----------------------------------------------------------------------------------------
8
PsiBlast_PDB
64.92
22%
21
- C3 -
3ANW
-
?
B:
[41-150]
-------------------------------------------------------------------------------------------------------------------------------------
V
E
I
V
D
E
T
D
K
I
I
G
--
E
I
D
K
--
V
I
-
A
-
E
E
R
E
S
E
P
L
T
L
------
L
P
E
G
L
Y
E
R
A
E
F
Y
A
Y
Y
L
E
N
Y
V
R
L
------
N
P
-----------
N
V
K
L
T
K
L
A
N
L
R
K
K
L
R
D
L
K
L
I
R
F
--------
N
K
I
L
K
A
V
-
M
L
--
N
S
L
E
L
L
S
R
L
A
P
E
-------
E
R
R
I
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
59.26
28%
19
- C3 -
3B1E
2
?
A:
[227-297]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
D
F
A
L
V
L
S
--------
S
A
T
-
K
T
F
-
N
I
A
G
T
K
N
S
Y
A
I
I
E
N
P
T
-------
L
C
A
Q
F
K
H
Q
Q
L
V
N
N
H
H
E
V
S
S
L
------
G
Y
I
-------------
A
T
E
T
-
A
Y
R
Y
G
K
P
W
L
V
A
-
L
------
K
A
-------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
58.55
28%
15
- C3 -
3B1D
1
?
A:
[227-297]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
D
F
A
L
V
L
S
--------
S
A
T
-
K
T
F
-
N
I
A
G
T
K
N
S
Y
A
I
I
E
N
P
T
-------
L
C
A
Q
F
K
H
Q
Q
L
V
N
N
H
H
E
V
S
S
L
------
G
Y
I
-------------
A
T
E
T
-
A
Y
R
Y
G
K
P
W
L
V
A
-
L
------
K
A
-------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
58.03
28%
16
- C3 -
3B1C
4
?
A:
[227-297]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
D
F
A
L
V
L
S
--------
S
A
T
-
K
T
F
-
N
I
A
G
T
K
N
S
Y
A
I
I
E
N
P
T
-------
L
C
A
Q
F
K
H
Q
Q
L
V
N
N
H
H
E
V
S
S
L
------
G
Y
I
-------------
A
T
E
T
-
A
Y
R
Y
G
K
P
W
L
V
A
-
L
------
K
A
-------------------------------------------------------------------------------------------------------------------
26
Fugue
55.95
11%
-3
* C4 *
3EVY
-
?
A:
[662-744]
--------------------------------------------------------------------------------------
M
K
P
Y
E
K
L
V
E
R
F
N
E
M
A
A
E
F
L
S
--
Y
F
P
T
V
K
--
S
V
G
N
L
E
S
E
L
D
K
R
R
F
V
I
L
F
R
A
M
L
R
L
R
N
E
V
K
--
G
Y
N
E
FD
A
E
-
D
-
L
T
I
E
E
Q
R
F
A
D
------
Y
Q
S
K
Y
L
D
M
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
51.18
26%
62
- C3 -
2JX5
-
?
A:
[1-69]
---------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
V
I
V
R
L
Q
D
------
Q
T
L
P
F
E
L
P
A
G
A
R
A
S
Q
L
S
N
L
L
S
S
------
S
G
M
------------------
A
F
S
L
--
H
T
Q
G
R
V
L
S
--------
E
A
A
-
E
L
------
N
D
K
M
V
I
D
A
F
V
P
A
-------
D
G
A
G
L
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
49.90
24%
-2
- C3 -
2D2S
-
EXO84_YEAST
A:
[538-582]
-----------------------------------------------------------------------------------------------------------------
E
--
G
V
E
E
I
D
I
E
L
A
R
L
R
F
E
S
A
V
E
T
L
L
D
I
E
S
Q
L
E
--
D
L
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
48.92
22%
5
- C3 -
3FP5
2
?
A:
[59-104]
------------------------------------------------------------------------------------------
K
A
K
W
D
A
W
K
S
V
E
G
T
S
K
E
--
V
A
Y
-
Q
K
--
Y
V
E
K
L
L
E
I
L
K
K
A
D
T
E
E
S
K
K
Y
I
A
E
I
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
48.00
26%
19
- C3 -
2IU5
-
DHAS_LACLA
A:
[89-149]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
Q
I
F
Y
--
Q
K
I
F
V
I
D
K
--------
N
F
E
-
H
F
F
-
L
I
Q
W
E
N
L
L
D
K
V
I
F
D
Q
E
-------
K
K
S
D
Y
H
W
S
D
L
-
E
K
-------------
S
F
I
C
R
-
Y
N
-------
A
A
A
I
C
-
A
I
--------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
47.19
35%
4
- C3 -
1JF8
3
ARSC_STAAU
A:
[2-28]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
K
K
T
I
------
Y
F
I
S
T
G
N
S
-------
A
R
S
Q
M
-
A
E
G
W
G
K
E
I
L
-------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
47.08
27%
8
- C3 -
4GDN
-
FLP_STAAN
A:
[145-201]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
A
I
M
G
D
E
L
H
H
K
-------
P
G
E
E
F
E
Y
S
N
M
-
N
----
Y
D
L
L
------
G
L
I
I
Q
-
N
V
-------
T
K
Q
S
Y
-
T
K
Y
I
T
N
S
W
L
K
P
-
L
------
H
M
T
H
T
S
F
--------------------------------------------------------------------------------------------------------------
14
HHSearch
41.56
28%
18
- C3 -
1JL3
1
ARSC_BACSU
A:
[3-28]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
K
I
I
------
Y
F
L
C
T
G
N
S
-------
C
R
S
Q
M
-
A
E
G
W
A
K
Q
Y
L
-------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
41.45
9%
-38
- C3 -
2VDJ
2
META_BACC1
A:
[207-296]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
T
L
L
A
N
--------
S
E
E
A
G
V
H
L
V
I
G
Q
E
G
R
Q
V
F
A
L
G
H
S
E
-------
Y
S
C
D
T
L
K
Q
E
Y
-
E
R
D
R
D
-
K
G
L
NIDVPK
N
Y
F
K
H
-
D
N
PNEKPLV
R
W
R
S
H
-
G
N
L
L
F
S
N
W
L
N
Y
Y
V
------
Y
Q
E
------------------------------------------------------------------------------------------------------------------
17
HHSearch
40.85
27%
-17
- C3 -
2WMY
1
?
A:
[7-34]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
F
D
S
I
------
L
V
I
C
T
G
N
I
-------
C
R
S
P
I
-
G
E
R
L
L
R
R
L
L
P
------------------------------------------------------------------------------------------------------------------------------