@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0720: (2016-03-18 )
MFNWYKKYREEKRDYKQYKKRIAALPEDYKTAMKAIETYLWNFAKGAGMFEILKNVLEMFENAAADNLELKAVVGDDLAEFADNLLSEFPEETWMDKQRQKLRDSIK
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------........---.10........20...--...------..30...------.-....40...-----.----..-.--.--50----........60..----..-..-..70...-.....80....--.-----...90........100.....----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------M
F
N
W
Y
K
K
Y
---
R
E
E
K
R
D
Y
K
Q
Y
K
K
R
I
AA--L
P
E
------
D
Y
K
T
A
M
K
------
A
-
I
E
T
Y
L
W
N
FA-----K----GA-
G
--
M
--
F
E
----
I
L
K
N
V
L
E
M
F
E
NA----AA-DN-
L
E
L
K
A
V
V-G
D
D
L
A
E
F
A
D
N
L
--
L
-----
S
EF
P
E
E
T
W
M
D
K
Q
R
Q
K
L
R
D
SIK----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
86.21
39%
-171
- C5 -
2O3L
2
?
A:
[2-77]
----------------------------------------------------------------------------------------------------------------------------------------------------------
E
Y
K
M
M
M
A
R
V
A
A
--
L
P
E
------
D
Y
Q
F
V
F
K
------
K
-
I
Q
N
Y
M
W
N
F
S
-----
A
----
G
N
-
G
M
D
M
--
L
H
----
I
Q
Y
E
L
I
D
L
F
E
A
G
----
A
A
-
E
G
-
R
Q
V
L
D
I
T
-
G
E
D
V
A
S
F
A
D
E
L
--
V
-----
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
85.24
37%
-162
- C5 -
2O3L
2
?
A:
[2-83]
----------------------------------------------------------------------------------------------------------------------------------------------------------
E
Y
K
M
M
M
A
R
V
A
A
--
L
P
E
------
D
Y
Q
F
V
F
K
------
K
-
I
Q
N
Y
M
W
N
F
S
A----
G
----
N
G
-
M
--
D
M
-
L
H
----
I
Q
Y
E
L
I
D
L
F
E
A
G
----
A
A
-
E
G
-
R
Q
V
L
D
I
T
-
G
E
D
V
A
S
F
A
D
E
L
--
V
-----
A
N
A
--
K
T
Y
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
80.20
27%
-130
- C5 -
2O4T
2
?
A:
[3-91]
--------------------------------------------------------------------------------------------------------------------------------------------------------------
H
V
S
R
V
E
K
--
L
P
K
------
D
Y
Q
I
V
Y
K
------
E
-
I
Q
K
Y
L
F
K
V
G
PVE
L
N
E
----
G
I
-
G
--
L
---------
L
S
E
I
L
G
F
F
E
E
G
----
A
A
-
A
G
-
K
G
V
L
D
V
T
-
G
T
D
V
A
A
F
C
D
A
L
--
I
-----
G
D
--
S
K
T
Y
A
D
L
Y
Q
E
S
I
Q
Q
H
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
41
Fugue
80.08
27%
-133
- C5 -
2O4T
2
?
A:
[3-92]
--------------------------------------------------------------------------------------------------------------------------------------------------------------
H
V
S
R
V
E
K
--
L
P
K
------
D
Y
Q
I
V
Y
K
------
E
-
I
Q
K
Y
L
F
K
V
G
PV---
E
----
L
N
-
E
--
G
--
I
G
----
L
L
S
E
I
L
G
F
F
E
E
G
----
A
A
-
A
G
-
K
G
V
L
D
V
T
-
G
T
D
V
A
A
F
C
D
A
L
--
I
-----
G
D
--
S
K
T
Y
A
D
L
Y
Q
E
S
I
Q
Q
H
V
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
76.12
27%
-139
- C5 -
2O4T
2
?
A:
[3-92]
--------------------------------------------------------------------------------------------------------------------------------------------------------------
H
V
S
R
V
E
K
--
L
P
K
------
D
Y
Q
I
V
Y
K
------
E
-
I
Q
K
Y
L
F
K
V
G
-----
P
----
V
E
-
L
--
N
E
G
I
G
----
L
L
S
E
I
L
G
F
F
E
E
G
----
A
A
-
A
G
-
K
G
V
L
D
V
T
-
G
T
D
V
A
A
F
C
D
A
L
--
I
-----
G
D
S
--
K
T
Y
A
D
L
Y
Q
E
S
I
Q
Q
H
V
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
70.80
37%
-29
- C5 -
2HH6
-
?
A:
[1-110]
-------------------------------------------------------------------------------------------------------------------------------------------
M
S
F
I
E
K
M
I
G
S
L
N
D
K
R
E
W
K
A
M
E
A
R
A
K
A
--
L
P
K
------
E
Y
H
H
A
Y
K
------
A
-
I
Q
K
Y
M
W
T
S
G
G----
P
----
T
D
-
W
--
Q
D
T
K
R
----
I
F
G
G
I
L
D
L
F
E
E
G
----
A
A
-
E
G
-
K
K
V
T
D
L
T
-
G
E
D
V
A
A
F
C
D
E
L
--
M
-----
K
D
T
--
K
T
W
M
D
K
Y
R
T
K
L
N
D
S
I
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
Fugue
55.21
14%
2
- C3 -
4YCZ
-
?
B:
[66-928]
S
E
Y
R
Y
A
A
L
A
K
D
A
Y
QQ
M
G
T
A
PVTE
P
P
Q
V
I
L
G
T
E
D
L
L
S
R
L
Y
D
EKM
D
D
T
L
A
T
A
A
A
Q
L
A
A
L
W
R
E
H
V
D
ET
P
F
E
K
A
N
Y
L
A
N
L
A
L
Q
I
H
HP
L
P
Q
T
L
F
R
W
LNEYHMYGS
Q
V
D
D
I
L
R
H
RPSPACHSL
F
W
Q
A
V
F
I
A
LK
V
G
D
A
A
R
L
L
D
Q
A
G
W
G
H
V
Y
A
Y
---
V
N
V
Q
R
A
V
D
E
T
I
A
V
L
E
S
--
C
P
T
------
L
F
R
V
R
A
R
------
G
-
L
L
E
H
L
R
R
F
A
-----
E
----
G
W
-
E
--
I
--
Y
E
----
N
L
N
I
V
F
D
I
V
L
G
Q
----
Q
G
-
A
I
-
L
E
A
A
Q
--------
D
W
L
E
A
T
--
V
-----
G
L
A
N
S
E
S
Y
L
D
R
L
A
R
A
F
H
T
A
V
E
SDFV
E
I
G
M
A
C
V
F
EDN
I
K
G
V
I
G
L
L
R
G
WSLPI
A
A
A
V
A
E
I
A
S
L
GKWLEVDG
I
K
D
S
T
L
V
Q
Y
A
Q
A
L
A
DYEGLSSVQDRDGW
E
L
S
I
S
V
L
G
RMPER
S
E
E
M
V
R
D
L
V
E
H
L
V
Q
Q
LHVDS
N
A
T
V
D
R
L
W
F
L
L
N
ELGM
I
E
F
A
E
D
T
T
E
T
Y
G
D
I
L
ARDSHR
Y
G
E
A
M
W
Y
Y
A
L
AHR
P
N
K
V
R
E
V
M
N
L
L
T
S
Y
S
L
I
QPPAND
L
D
D
Y
L
Y
K
LLNDRK
N
T
L
E
Q
C
A
S
QDMEA
A
E
L
L
G
K
M
L
S
G
Y
A
S
L
R
Q
F
Y
D
I
RPH
A
T
P
L
S
R
R
K
Q
A
A
T
A
L
I
S
V
I
A
S
SDDEDF
L
L
A
L
L
G
E
A
L
V
F
V
SDPT
L
D
Q
I
D
V
L
L
K
A
I
E
D
L
Q
A
VGSR
V
Y
N
A
C
D
E
F
L
Q
L
V
L
ASAPGG
S
S
L
V
A
S
Q
L
Q
R
S
L
SGTGG
E
D
I
M
R
R
L
R
L
G
L
A
K
D
L
A
G
LWLAEA
2
PsiBlast_PDB
51.90
37%
62
- C5 -
2HH6
-
?
A:
[13-109]
-------------------------------------------------------------------------------------------------------------------------------------------------------
D
K
R
E
W
K
A
M
E
A
R
A
K
A
--
L
P
K
------
E
Y
H
H
A
Y
K
------
A
-
I
Q
K
Y
M
W
T
-
S
-----
G
----
G
P
-
T
--
D
--
W
Q
D
T
K
R
I
F
G
G
I
L
D
L
F
E
E
G
----
A
A
-
E
G
-
K
K
V
T
D
L
T
-
G
E
D
V
A
A
F
C
D
E
L
--
M
-----
K
D
--
T
K
T
W
M
D
K
Y
R
T
K
L
N
D
S
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
50.43
22%
-81
- C5 -
1SCF
-
SCF_HUMAN
A:
[36-124]
----------------------------------------------------------------------------------------------------------------------------------------------------------
N
V
K
D
V
T
K
L
V
A
N
--
L
P
K
------
D
Y
M
I
T
L
K
YVPGMD
V
-
L
P
S
H
C
W
I
S
E
-----
M
----
V
V
-
Q
--
L
--
S
D
----
S
L
T
D
L
L
D
K
F
S
N
-----
I
S
-
E
G
-
L
S
N
Y
S
I
I
--
D
K
L
V
N
I
V
D
D
L
--
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
43
Fugue
50.34
15%
-6
- C5 -
2KAU
-
URE3_ENTAE
A:
[1-100]
---------------------------------------------------------------------------------------------------------------------------------------------
M
E
L
T
P
---
R
E
K
D
K
L
L
L
F
T
A
A
L
V
A
E
--
R
R
L
A
R
G
L
K
L
N
Y
P
E
S
V
A
------
L
-
I
S
A
F
I
M
E
G
A
-----
R
----
D
G
---------------
K
S
V
A
S
L
M
E
E
G
----
R
H
----
V
L
T
R
E
Q
V
-
M
E
G
V
P
E
M
I
P
D
I
Q
V
E
-----
A
T
F
P
D
----
G
S
K
L
V
T
V
H
N
P
I
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
46.45
32%
-72
- C5 -
4DLO
4
AGRB3_HUMAN
A:
[127-177]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
----
I
L
R
N
V
T
D
T
F
K
R
A
S
Y
I
P
A
S
-
D
G
-
V
Q
--------
N
F
F
Q
I
V
S
N
L
--
L
-----
D
E
E
N
K
E
K
W
E
D
A
Q
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
47
Fugue
45.69
15%
-25
- C4 -
1VYI
5
A:
[1-111]
---------------------------------------------------------------------------------------------------------------------------------------------
W
S
A
T
N
---
E
E
D
D
L
S
V
E
A
E
I
A
H
Q
I
A
E
S
F
S
K
------
K
Y
K
F
P
S
R
------
S
-
S
G
I
F
L
Y
N
F
E
-----
Q
LKMN
L
D
-
D
--
I
--
V
K
----
E
A
K
N
V
P
G
V
T
R
L
A
----
H
D
G
S
K
-
I
P
L
R
C
V
L
-
G
W
V
A
L
A
N
S
K
K
F
--
Q
-----
L
L
V
E
A
D
K
L
S
K
I
M
Q
D
D
L
N
R
Y
T
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
45
Fugue
45.18
14%
-35
- C4 -
1LJ2
1
NSP3_ROTS1
A:
[2-107]
-------------------------------------------------------------------------------------------------------------------------------------------
H
S
L
Q
N
V
I
---
P
Q
Q
Q
A
H
I
A
E
L
Q
V
Y
N
N
K
--
L
E
R
------
D
L
Q
N
K
I
G
------
S
L
T
S
S
I
E
W
Y
L
R
-----
S
----
M
E
-
L
--
D
--
P
E
----
I
K
A
D
I
E
Q
Q
I
N
S
I
----
D
A
-
I
N
----
P
L
H
A
-
F
D
D
L
E
S
V
I
R
N
L
--
I
-----
S
D
Y
D
K
L
F
L
M
F
K
G
L
I
Q
R
S
N
Y
Q
Y
S
F--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
48
Fugue
44.52
13%
-30
* C4 *
4ITQ
2
?
A:
[14-103]
---------------------------------------------------------------------------------------------------------------------------------------------
A
L
E
K
A
---
A
A
A
R
R
E
R
A
E
V
K
N
R
L
K
H
--
S
G
A
------
S
L
H
E
V
I
K
------
Q
-
G
Q
E
---
N
D
V
-----
I
----
G
K
M
K
--
V
--
S
A
----
L
L
E
S
L
P
G
V
G
K
V
R
----
A
K
-
Q
I
M
E
R
L
G
I
S
E
-
S
R
R
V
R
G
L
G
--------------------
S
N
Q
I
A
S
L
E
R
E
F
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
43.92
26%
-67
- C5 -
1PVV
-
OTC_PYRFU
A:
[183-238]
------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
V
A
--
T
P
E
------
G
Y
E
P
D
E
K
------
V
-
I
K
W
A
E
Q
N
A
A
-----
E
----
S
G
-
G
--
S
--
F
E
----
L
L
H
D
P
V
K
A
V
K
D
A
----
D
V
-
I
Y
-
T
D
V
W
A
S
M
-
G
Q
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
HHSearch
43.88
8%
-143
- C5 -
1H3L
-
SIGR_STRCO
A:
[35-97]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
--
F
E
R
------
D
A
L
E
F
L
D
------
Q
-
M
Y
S
A
A
L
R
M
T
-----
R
----
N
P
-
A
--
D
A
-
E
D
----
L
V
Q
E
T
Y
A
K
A
Y
A
S
----
F
H
-
Q
F
-
R
E
------
G
T
N
L
K
A
W
L
Y
R
I
--
L
-----
T
N
T
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
43.80
50%
-62
- C5 -
3KFU
-
SYDND_THET8
A:
[282-307]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
G
Y
P
V
-
G
Q
D
L
S
E
E
A
E
R
L
--
L
-----
G
E
Y
A
K
E
R
W
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
43.73
50%
-61
- C5 -
1N9W
-
SYDND_THET8
A:
[282-307]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
G
Y
P
V
-
G
Q
D
L
S
E
E
A
E
R
L
--
L
-----
G
E
Y
A
K
E
R
W
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
49
Fugue
43.64
21%
2
- C4 -
4E8Y
4
?
A:
[43-350]
----------------------------VVPVP
R
E
Q
L
A
R
S
R
V
L
V
V
G
D
V
M
L
D
R
Y
W
F
G
N
V
DRISPEAP
V
P
V
V
HVQ
R
Q
E
E
R
L
G
G
A
A
N
V
A
R
N
A
V
T
L
G
G
Q
A
G
L
L
C
V
V
G
CD
E
P
G
E
R
I
V
E
L
L
G
S
S
GVTPH
L
E
R
D
PALPT
T
I
K
L
R
V
L
A
R
Q
Q
Q
L
L
---
R
V
D
F
E
A
M
P
T
H
E
V
L
L
A
G
--
L
A
R
------
F
D
V
L
L
P
Q
------
H
-
D
V
V
L
M
S
D
Y
A
-----
K
----
G
G
--------------
L
T
H
V
T
T
M
I
E
K
A
----
R
A
-
A
G
-
K
A
V
L
V
D
P
K
G
D
D
W
A
R
Y
R
G
A
S
--
L
I
T
P
N
R
A
E
L
R
E
V
V
G
Q
W
K
S
E
D
D
L
R
A
R
V
A
N
L
R
A
E
L
DID
A
L
L
L
T
R
S
EE
G
M
T
L
F
S
AG
G
E
L
H
A
P
ALAREVFDVSG
A
G
D
T
V
I
A
T
V
A
T
M
L
G
A
GVP
L
V
D
A
V
V
L
A
N
R
A
A
G
I
V
V
G
KL
G
T
A
T
V
D
YDEL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
43.38
25%
-27
- C5 -
3OP4
1
?
A:
[43-109]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
S
G
A
Q
------
A
-
I
S
D
Y
L
G
D
N
G
-----
K
----
G
M
-
A
--
L
--
N
V
----
T
N
P
E
S
I
E
A
V
L
K
A
----
I
T
-
D
E
-
F
G
G
V
D
I
L
-
V
N
N
A
G
I
T
R
D
N
L
--
L
-----
M
R
M
K
E
E
E
W
S
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------