@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0750: (2016-03-18 )
MFKNLFKKPKMKDEMLEMKQNQYGARAFNMMIIIVAIVILIKAVVLEASISELWVELLLLIVGGGYYFYSVLKNNVPFMPTISLKQTIRLVFLISAIFGISVGIRNVFFLYADNMSGTELSYQMMMFFFISLFTAIGSGVIFGALAYCLYQLSKWQEKNIMKKIEVENAED
Atome Classification :
(15 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------........--.10........20------....------.....30........40----------.--------....----------...50........60..-.....--.70.---..-----.....80..-......90-------..------------...-----...-----100.......-----------110-...----....120....-.-..130------..------.......-140.......150.--.......160.......170----------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
F
K
N
L
F
KK--PK
M
K
D
E
M
L
E
M
K
Q
-------NQYG------
A
R
A
F
N
M
M
I
I
I
V
A
I
V
I
L
I
----------
K
--------
A
V
V
L
----------EA
S
I
S
E
L
W
V
E
L
L
L
L
I
VG-
G
G
Y
Y
F
--
Y
S
V
L
---KN-----NVPFMP
T
I
S
-
L
K
Q
T
I
R
L
V
-------
F
L
------------
I
S
A
-----
I
F
G
-----
I
S
V
G
I
R
N
V
F
F
-----------
L
Y
A-DNM----SG
T
E
L
S
Y
Q
M
M
M
-
F
-
F
F
I
--------
S
L
------
F
T
A
IG
S
G
-
V
I
F
G
A
L
A
Y
C
L
Y
Q
-
L
--
S
K
W
Q
E
K
N
I
M
K
K
IEVENAED-----------------------------------------------------------------------------------------------------------------------------
18
Fugue
87.05
17%
-142
- C6 -
2W69
6
PA_I75A3
A:
[7-203]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
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F
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C
F
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M
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A
M
-------
K
E
Y
G
EDLKIE
T
N
K
F
A
A
I
C
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H
L
E
V
C
F
M
Y
S
DFHFINEQG
E
--------
S
I
V
V
----------
E
L
D
D
P
N
A
L
K
H
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E
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M
A
--
W
T
V
V
---
N
S
-----
I
C
N
T
T
G
A
E
K
-
P
K
F
L
P
D
L
Y
D------
Y
K
------------
E
N
R
-----
F
I
E
-----
I
G
V
T
R
R
E
V
H
I
-----------
Y
Y
L
-
E
K
A
----
N
K
I
K
S
T
---------
H
I
--------
H
I
------
F
S
F
T
G
E
E
-
M
A
T
K
A
-
D
Y
T
L
D
E
-
E
--
S
R
A
R
I
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R
L
F
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I
R
Q
E
M
A
N
R
GL
W
D
S
F
R
Q
S
ER------------------------------------------------------------------------------------------------------------------
14
Fugue
80.79
15%
-101
- C5 -
1X1F
-
STAP1_HUMAN
A:
[1-149]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
S
G
S
S
G
Q
--
E
R
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K
I
T
A
L
P
L
Y
F
-------
E
G
----------------------
F
L
L
----------
I
--------
K
R
S
G
----------
Y
R
E
Y
E
H
Y
W
T
E
L
R
------
G
T
T
L
F
--
F
Y
T
D
---
K
K
-----
S
I
I
Y
V
D
K
L
D
-
I
V
D
L
T
C
L
T
-------
E
Q
------------
N
S
T
EKN
C
A
K
F
T
-----
L
V
L
P
K
E
E
V
Q
L
-----------
K
T
E
-
N
T
E
----
S
G
E
E
W
R
G
F
I
L
T
-
V
-
T
E
L
--------
S
V
------
P
Q
N
V
S
L
-------
L
P
G
Q
V
I
K
-
L
--
H
E
V
L
E
R
E
K
K
R
R
I
E
S
G
P
S
S
G
-----------------------------------------------------------------------------------------------------------------------------
10
Fugue
77.57
18%
-138
- C5 -
1DVO
-
FINO3_ECOLX
A:
[33-184]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
P
K
--
W
K
V
K
K
Q
K
L
A
E
K
A
-------
A
R
E
A
------
E
L
T
A
K
K
A
Q
A
R
Q
A
L
S
I
Y
L
----------
N
--------
L
P
T
L
----------
D
E
A
V
N
T
L
K
---------------------------------
P
W
W
P
G
L
F
-
D
G
D
T
P
R
L
--------------------------------------
L
A
C
G
I
R
D
V
L
L
-----------
E
D
V
-
A
Q
-----
R
N
I
P
L
S
H
K
K
L
R
-
R
-
A
M
K
--------
A
I
T
R
S
E
S
Y
L
C
A
M
K
A
G
A
C
R
Y
D
T
E
G
Y
V
T
E
H
-
I
--
S
Q
E
E
E
V
Y
A
A
E
R
L
D
K
I
R
R
Q
N
R
I
K
A
E
L
Q
A
V
L
D------------------------------------------------------------------------------------------------------------------
13
Fugue
75.53
17%
-115
- C3 -
1II2
1
PCKA_TRYCR
A:
[1-522]
PPTIHRNLL
S
P
E
L
V
Q
W
A
L
K
IEKD
S
R
L
T
ARG
A
L
A
V
M
SYAKTGRSPLDKRIVDTDDVRENVDWGKV
N
M
K
L
S
E
E
S
F
A
R
V
R
K
I
A
K
E
F
L
D
T
RE
H
L
F
V
V
D
C
F
A
G
HDER
Y
R
L
K
V
R
V
F
T
TR
P
Y
H
A
L
F
M
R
D
M
L
I
V
P
T
P
E
E
L
A
T
FGEPD
Y
V
I
YNAGECKADPSIPGLTST
T
C
V
A
L
N
FKTR
E
Q
V
I
L
GTEY
A
G
E
M
K
K
G
I
L
T
V
M
F
E
L
M
P
Q
M
N
H
L
C
M
H
A
S
A
N
V
G
KQG
D
V
T
V
F
F
G
L
S
G
T
G
K
T
T
L
S
A
--
D
P
H
R
N
L
I
G
D
D
E
H
-------
V
W
T
D
------
R
G
V
F
N
I
E
G
G
C
Y
A
K
A
I
-------------------------------------
G
L
N
P
K
T
E
K
D
I
Y
D
A
V
R
-
F
G
A
V
A
--
E
N
C
V
LDK
R
T
-----
G
E
I
D
F
Y
D
E
S
-
I
C
K
N
T
R
V
A
-------
Y
P
------------
L
S
H
-----
I
E
G
ALSKA
I
A
G
H
P
K
N
V
I
F
-----------
L
T
N
-
D
A
F
GVMP
P
V
A
R
L
T
S
A
Q
A
M
-
F
-
W
F
V
--------
M
G
------
Y
T
A
N
V
P
G
-
V
E
A
G
G
T
R
T
A
R
P
I
-
F
--
S
S
C
F
G
G
P
F
L
V
R
H
A
T
F
Y
G
E
Q
L
A
E
K
M
Q
K
H
N
S
R
V
W
L
L
N
TGYAGGRADRGAKRMP
L
R
V
T
R
A
I
I
D
A
I
H
D
GTLDR
T
E
Y
E
E
YPGWG
L
H
I
P
KYVAKVP
E
H
L
L
N
PRKAWKD
V
R
Q
F
N
E
T
S
K
E
L
V
A
M
F
Q
E
S
F
S
A
R
FAAKAS
Q
E
M
K
S
A
V
P
R
Y
V
E
FA
9
Fugue
70.45
15%
-92
- C5 -
3RMR
-
?
A:
[63-311]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------WP
F
G
P
S
A
V
E
A
L
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T
I
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H
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SLN
D
E
A
K
M
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V
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W
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K
L
I
E
R
--
D
D
L
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E
I
G
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H
Y
F
E
APGPLH
D
T
Y
D
------
E
A
L
A
T
R
L
V
T
T
Y
S
D
R
G
V
A
----------
R
--------
A
I
L
H
T
RPSDPLSKK
A
G
Q
A
H
R
L
E
E
A
V
A
S
L
W
K
G
-
R
G
Y
T
S
--
D
N
V
V
---
S
S
I
ATGH
D
V
D
F
F
A
P
T
A
-
F
T
F
L
V
K
C
V
ES
E
D
D
A
N
N
A
------------
I
F
E
-----
Y
F
G
-----
S
N
P
S
R
Y
F
S
A
V
-----------
L
H
A
M
E
K
P
----
D
A
D
S
R
V
L
E
S
S
K
K
W
M
F
Q
C
--------
Y
A
------
Q
K
Q
F
P
T
P
-
V
F
E
R
T
L
A
A
Y
Q
Y
E
K
L
--
S
L
S
Q
I
E
E
L
V
E
E
Y
S
R
I
Y
S
-------------------------------------------------------------------------------------------------------------------------------
17
Fugue
59.10
9%
-155
* C6 *
2W36
2
NFI_THEMA
A:
[1-223]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDYRQ
L
H
R
W
D
L
P
P
--
E
E
A
I
K
V
Q
N
E
L
R
K
-------
K
I
K
L
------
T
P
Y
E
G
E
P
E
Y
V
A
G
V
A
L
S
F
----------
P
GKE
E
G
L
A
V
I
V
V
L
----------
E
Y
P
S
F
K
I
L
E
V
V
S
E
R
G
E
I
-
T
F
P
Y
I
PG
L
L
A
F
---
R
E
-----
G
P
L
F
L
K
A
W
E
K
L
R
T
K
P
D
V
V
-------
V
F
D
G
QGLAHPRKLG
I
A
S
-----
H
M
G
-----
L
F
I
E
I
P
T
I
G
V
A
KSRL
Y
G
T
F
K
M
P
E
D
-
K
R
C
----
S
W
S
Y
L
Y
D
G
E
E
I
-
I
-
G
C
V
I
RTKEG
S
A
P
I
------
F
V
S
P
G
H
L
-
M
D
V
E
S
S
K
R
L
I
K
A
-
F
TL
P
G
R
R
I
P
E
P
T
R
L
A
H
I
Y
T
Q
R
L
K
K
G--------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
51.37
40%
7
- C4 -
2YSR
-
DEP1A_HUMAN
A:
[49-73]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
L
--
Y
D
L
L
---
R
N
-----
N
S
N
F
G
P
E
V
T
-
R
Q
Q
T
I
Q
L
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
42.39
18%
114
* C5 *
4IMY
-
AFF4_HUMAN
G:
[36-68]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
F
A
E
P
Y
K
V
--
T
S
K
E
D
K
L
S
S
R
I
Q
-------
S
M
L
G
------
N
Y
D
E
M
K
D
F
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
Fugue
36.65
13%
195
- C5 -
1WNM
-
?
A:
[1-23]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
S
--
P
E
Q
R
A
T
R
L
K
R
M
S
-------
E
Y
A
A
------
K
R
L
S
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
29.30
9%
252
- C4 -
1EJ5
-
A:
[85-106]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
M
H
V
-
M
--
Q
K
-
R
S
R
A
I
H
S
S
-
D
E
G
E
D
Q
A
-----------------------------------------------------------------------------------------------------------------------------
2
HHSearch
22.01
0%
154
- C4 -
2KNC
-
ITA2B_HUMAN
A:
[985-1004]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
M
W
K
V
G
F
-
F
--
K
R
N
R
P
P
L
E
E
D
D
-------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
20.99
13%
5
* C4 *
2KSD
-
ARCB_ECOLI
A:
[56-86]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
R
S
--------
I
F
------
F
G
L
L
I
T
P
-
W
A
V
Y
F
L
S
V
V
V
E
Q
-
L
--
E
E
S
R
Q
R
------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
18.86
8%
82
- C4 -
2L8S
-
A:
[24-46]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
L
I
L
A
L
W
K
I
G
F
-
F
--
K
R
P
L
K
K
K
M
E
K
--------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
14.99
0%
502
- C2 -
3UKX
-
?
C:
[6-19]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
R
R
K
R
K
R
E
W
D
D
D
D
D
-------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
12.86
9%
462
- C1 -
2K9J
-
?
B:
[714-724]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
W
K
-
L
--
L
I
T
I
H
D
R
-----------------------------------------------------------------------------------------------------------------------------------------