@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0846: (2016-03-19 )
LDDKLQKKLTLLPESPGCYIYRDENNEILYIGKSKCLKNRVKSYFHSKQIGKTARLVRQIRDLELIITTSEKEALLLEMILIQKYQPPFNIQLKEGTSYPYIKITNEKNPHIEVVFEVKRDGAHYFGPYPGRFSARQTVDLIEKLFPLCRCDGKPGRPCLYYHLGLCLGPCQAEIEPAVYKKQIHKISRFLEGDVKNVKDKLLGDMLTATENLEFERAAELRDKIHAINETIEKQHIIFPGLKNRDIIGCYEQDNYLSVFVFFVRNGAINGSKWHVFQVEKTLQEELATFLNQFYEDPNNIQPKELLIAEKIDKSLLNEPLRKACLFPQKGSKKKQVDLAIENAKSAYIAYAKMKEYDFEIQLNNH
Atome Classification :
(20 SA)
----------.........10........20...----------------.....30....------------------....40......-.------.50.--......---------..60---..----......----.----70.-------------........80........90........100.......110.--......120.......----------------------------130.......140....-------...150.......160.......170.......180.......--------------190.......200....---------...210.......220..----.....230.......-240....--...250........260.......270.......280.....----..290......-----.300.......310.----------......320.......330.......-340....---...350.......360....-------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------L
D
D
K
L
Q
K
K
L
TLLPESP
G
C
Y
I
Y
RDE----------------NN
E
I
L
Y
IG
K
S
K
------------------
C
L
K
N
R
V
K
S
Y
F
H
S
-
K
------QI-
G
--
K
T
A
R
L
V
---------
R
Q
I----RD----
L
E
L
I
I
T----T----S-E-------------
K
E
A
L
L
L
E
M
I
L
I
Q
KYQPP
F
N
I
Q
LKEGTSY
P
Y
I
K
ITNEKNP
H
I
E
--
V
V
F
E
V
KRDGAHYFGPY----------------------------PGRFSA
R
Q
T
V
D
L
I
E
K
L
F
-------
P
L
CRCDGKPGR
P
C
L
Y
Y
HLGLCLGP
C
Q
AEI
E
P
A
V
Y
K
K
Q
I
H
K
I
S
R
--------------
F
L
EG
D
V
K
N
V
K
D
K
L
L
G
D
M
---------
L
TATENL
E
F
E
R
A
A
E
L
R
D
K
----
I
H
A
I
N
E
T
I
EKQ
H
I
IF-PGLKNR
D
--
I
I
G
C
Y-EQDN
Y
L
S
V
F
V
F
F
V
RNGAINGS
K
W
H
V
F
Q
V
E
K
T
L
Q
E
E
L
----
A
T
F
L
N
Q
F
YEDP-----NNI
Q
P
K
E
L
L
I
A
E
K
I
D
----------
K
S
L
L
N
E
P
L
R
K
ACLFPQKGSKK
K
Q
V
D
L
-
A
IENAK
S
---
A
Y
I
A
Y
A
K
MK
E
Y
D
F
E
I
Q
LNNH-------------------------
43
Fugue
74.32
20%
-33
* C5 *
4IWS
-
?
A:
[23-515]
M
N
R
S
A
L
D
F
R
H
F
V
D
H
L
R
R
Q
G
D
L
V
D
V
H
T
E
V
----
D
A
----------------
N
L
E
I
G
A
I
T
R
R
V
------------------
Y
E
R
R
A
P
A
P
L
F
H
N
I
R
------
D
S
-
L
--
P
G
A
R
V
L
G
APAGLRAD
R
A
R
----
A
H
----
S
R
L
A
L
H
F
GLP
E
----
H
-
S
-------------
G
P
R
D
I
V
A
M
L
R
A
A
M
R
A
E
P
I
A
P
R
R
L
E
R
G
P
V
Q
E
N
V
W
L
G
E
Q
V
D
L
T
R
FP
V
P
L
L
H
E
Q
D
G
G
R
Y
F
G
T
Y
G
F
H
V
V
Q
T
PDGS
W
D
S
W
S
V
G
R
L
M
L
V
D
RN
T
L
A
G
P
T
I
P
T
Q
H
I
G
I
I
R
E
Q
W
R
R
L
GK
P
T
P
W
A
M
A
L
G
A
P
P
A
A
L
A
A
A
G
M
P
L
P
E
G
V
S
E
A
G
Y
V
G
A
L
V
G
E
P
V
-
E
V
V
R
T
QTNGLWVPANTE
I
V
L
E
G
E
I
S
L
D
E
T
A
L
E
G
P
M
GEYHGYSFP
I
G
K
P
Q
P
L
F
H
V
H
A
L
S
F
R
D
Q
P
I
L
P
I
C
V
A
G
T
P
P
E
E
N
H
T
I
W
-
G
T
M
I
S
A
Q
--
L
L
D
V
A
-
Q
N
A
G
-
L
P
V
D
M
V
W
C
--
S
Y
E
A
A
T
C
W
A
V
L
S
I
D
V
Q
R
L
A
A
L
GTD
A
A
A
F
A
A
R
V
A
E
T
V
F
G
S
H
A
G
H
L
V
P
K
L
I
L
V
G
N
D
I
D
VTE
I
D
Q
V
V
W
A
L
A
T
R
A
H
P
L
H
D
H
F
A
F
P
Q
I
R
D
F
P
M
V
P
Y
L
-
D
A
E
D
K
A
R
GSG
G
R
L
V
I
N
C
L
Y
P
E
Q
F
A
G
Q
M
R
A
A
TASFRHAYP
T
A
L
R
R
R
V
E
E
R
W
SDYGF
19
PsiBlast_CBE
71.76
49%
-79
- C4 -
1YD6
5
UVRC_GEOKA
C:
[1-94]
----------
M
N
E
R
L
K
E
K
L
A
V
L
P
E
Q
P
G
C
Y
L
M
K
D
K
----------------
H
G
T
V
I
Y
V
G
K
A
K
------------------
S
L
K
E
R
V
R
S
Y
F
T
G
-
T
------
H
D
-
G
--
K
T
Q
R
L
V
---------
E
E
I
----
A
D
----
F
E
Y
I
V
T
----
S
----
S
-
N
-------------
A
E
A
L
I
L
E
M
N
L
I
K
K
H
D
P
K
Y
N
V
M
L
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_CBE
70.72
49%
-72
- C4 -
1YD6
3
UVRC_GEOKA
D:
[2-97]
-----------
N
E
R
L
K
E
K
L
A
V
L
P
E
Q
P
G
C
Y
L
M
K
D
K
----------------
H
G
T
V
I
Y
V
G
K
A
K
------------------
S
L
K
E
R
V
R
S
Y
F
T
G
-
T
------
H
D
-
G
--
K
T
Q
R
L
V
---------
E
E
I
----
A
D
----
F
E
Y
I
V
T
----
S
----
S
-
N
-------------
A
E
A
L
I
L
E
M
N
L
I
K
K
H
D
P
K
Y
N
V
M
L
K
D
D
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
70.39
49%
-79
- C4 -
1YD6
3
UVRC_GEOKA
A:
[1-95]
----------
M
N
E
R
L
K
E
K
L
A
V
L
P
E
Q
P
G
C
Y
L
M
K
D
K
----------------
H
G
T
V
I
Y
V
G
K
A
K
------------------
S
L
K
E
R
V
R
S
Y
F
T
G
-
T
------
H
D
-
G
--
K
T
Q
R
L
V
---------
E
E
I
----
A
D
----
F
E
Y
I
V
T
----
S
----
S
-
N
-------------
A
E
A
L
I
L
E
M
N
L
I
K
K
H
D
P
K
Y
N
V
M
L
K
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
69.93
50%
-75
- C4 -
1YD6
3
UVRC_GEOKA
A:
[2-95]
-----------
N
E
R
L
K
E
K
L
A
V
L
P
E
Q
P
G
C
Y
L
M
K
D
K
----------------
H
G
T
V
I
Y
V
G
K
A
K
------------------
S
L
K
E
R
V
R
S
Y
F
T
G
-
T
------
H
D
-
G
--
K
T
Q
R
L
V
---------
E
E
I
----
A
D
----
F
E
Y
I
V
T
----
S
----
S
-
N
-------------
A
E
A
L
I
L
E
M
N
L
I
K
K
H
D
P
K
Y
N
V
M
L
K
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
68.42
41%
-75
- C4 -
1YD3
6
UVRC_THEMA
A:
[1-90]
----------
M
K
E
K
I
R
K
K
I
L
L
A
P
E
E
P
G
V
Y
I
F
K
N
K
----------------
G
V
P
I
-
Y
I
G
K
A
K
------------------
R
L
S
N
R
L
R
S
F
L
N
P
--------
Q
T
-
E
--
K
V
F
R
I
G
---------
E
E
A
----
D
E
----
L
E
T
I
V
V
----
M
----
N
-
E
-------------
R
E
A
F
I
L
E
A
N
L
I
K
K
Y
R
P
K
Y
N
V
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
68.07
41%
-76
- C4 -
1YD2
5
UVRC_THEMA
A:
[1-90]
----------
M
K
E
K
I
R
K
K
I
L
L
A
P
E
E
P
G
V
F
I
F
K
N
K
----------------
G
V
P
I
-
Y
I
G
K
A
K
------------------
R
L
S
N
R
L
R
S
Y
L
N
P
--------
Q
T
-
E
--
K
V
F
R
I
G
---------
E
E
A
----
D
E
----
L
E
T
I
V
V
----
M
----
N
-
E
-------------
R
E
A
F
I
L
E
A
N
L
I
K
K
Y
R
P
K
Y
N
V
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
67.05
41%
-74
- C4 -
1YD5
3
UVRC_THEMA
A:
[1-90]
----------
M
K
E
K
I
R
K
K
I
L
L
A
P
E
E
P
G
V
Y
I
F
K
N
K
----------------
G
V
P
I
-
Y
I
G
K
A
K
------------------
R
L
S
N
R
L
R
S
Y
L
N
P
--------
Q
T
-
E
--
K
V
F
R
I
G
---------
E
E
A
----
D
E
----
L
E
T
I
V
V
----
M
----
N
-
E
-------------
R
E
A
F
I
L
E
A
N
L
I
K
K
Y
R
P
K
Y
A
V
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
66.94
41%
-76
- C4 -
1YD4
3
UVRC_THEMA
A:
[1-89]
----------
M
K
E
K
I
R
K
K
I
L
L
A
P
E
E
P
G
V
Y
I
F
K
N
K
----------------
G
V
P
I
-
F
I
G
K
A
K
------------------
R
L
S
N
R
L
R
S
Y
L
N
P
--------
Q
T
-
E
--
K
V
F
R
I
G
---------
E
E
A
----
D
E
----
L
E
T
I
V
V
----
M
----
N
-
E
-------------
R
E
A
F
I
L
E
A
N
L
I
K
K
Y
R
P
K
Y
N
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
Fugue
66.83
40%
-77
- C4 -
1YD0
5
UVRC_THEMA
A:
[1-89]
----------
M
K
E
K
I
R
K
K
I
L
L
A
P
E
E
P
G
V
Y
I
F
K
N
-----------------
K
G
V
P
I
Y
I
G
K
A
K
------------------
R
L
S
N
R
L
R
S
Y
L
N
P
-
Q
------
T
--
E
--
K
V
F
R
I
G
---------
E
E
A
----
D
E
----
L
E
T
I
V
V
----
M
----
N
-
E
-------------
R
E
A
F
I
L
E
A
N
L
I
K
K
Y
R
P
K
Y
N
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
66.33
42%
-75
- C4 -
1YCZ
1
UVRC_THEMA
A:
[1-89]
----------
M
K
E
K
I
R
K
K
I
L
L
A
P
E
E
P
G
V
Y
I
F
K
N
K
----------------
G
V
P
I
-
Y
I
G
K
A
K
------------------
R
L
S
N
R
L
R
S
Y
L
N
P
--------
Q
T
-
E
--
K
V
F
R
I
G
---------
E
E
A
----
D
E
----
L
E
T
I
V
V
----
M
----
N
-
E
-------------
R
E
A
F
I
L
E
A
N
L
I
K
K
Y
R
P
K
Y
N
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_CBE
66.04
49%
-82
- C4 -
1YD6
2
UVRC_GEOKA
B:
[8-95]
-----------------
K
L
A
V
L
P
E
Q
P
G
C
Y
L
M
K
D
K
----------------
H
G
T
V
I
Y
V
G
K
A
K
------------------
S
L
K
E
R
V
R
S
Y
F
T
G
-
T
------
H
D
-
G
--
K
T
Q
R
L
V
---------
E
E
I
----
A
D
----
F
E
Y
I
V
T
----
S
----
S
-
N
-------------
A
E
A
L
I
L
E
M
N
L
I
K
K
H
D
P
K
Y
N
V
M
L
K
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
65.93
42%
-76
- C4 -
1YD1
3
UVRC_THEMA
A:
[1-89]
----------
M
K
E
K
I
R
K
K
I
L
L
A
P
E
E
P
G
V
Y
I
F
K
N
K
----------------
G
V
P
I
-
Y
I
G
K
A
K
------------------
R
L
S
N
R
L
R
S
Y
L
N
P
--------
Q
T
-
E
--
K
V
F
R
I
G
---------
E
E
A
----
D
E
----
L
E
T
I
V
V
----
M
----
N
-
E
-------------
R
E
A
F
I
L
E
A
N
L
I
K
K
Y
R
P
K
Y
N
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
65.82
42%
-76
- C4 -
1YD0
5
UVRC_THEMA
A:
[1-89]
----------
M
K
E
K
I
R
K
K
I
L
L
A
P
E
E
P
G
V
Y
I
F
K
N
K
----------------
G
V
P
I
-
Y
I
G
K
A
K
------------------
R
L
S
N
R
L
R
S
Y
L
N
P
--------
Q
T
-
E
--
K
V
F
R
I
G
---------
E
E
A
----
D
E
----
L
E
T
I
V
V
----
M
----
N
-
E
-------------
R
E
A
F
I
L
E
A
N
L
I
K
K
Y
R
P
K
Y
N
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
65.07
41%
-71
- C4 -
1YD0
5
UVRC_THEMA
A:
[2-89]
-----------
K
E
K
I
R
K
K
I
L
L
A
P
E
E
P
G
V
Y
I
F
K
N
-----------------
K
G
V
P
I
Y
I
G
K
A
K
------------------
R
L
S
N
R
L
R
S
Y
L
N
P
-
Q
------
T
E
----
K
V
F
R
I
G
---------
E
E
A
----
D
E
----
L
E
T
I
V
V
----
M
----
N
-
E
-------------
R
E
A
F
I
L
E
A
N
L
I
K
K
Y
R
P
K
Y
N
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
47
Fugue
63.37
17%
-18
- C2 -
3QS7
1
FLT3_HUMAN
E:
[56-411]
------A
A
V
E
V
D
V
S
A
S
I
T
L
Q
V
L
V
D
A
P
G
-----------------------
N
I
S
C
L
W
V
F
K
H
S
------------------
S
L
N
C
Q
P
H
F
G
V
V
S
-
M
------
V
I
-
L
--
K
M
-------------
T
E
T
----
Q
A
----
G
E
Y
L
L
F
----
I
----
Q
-
S
-------------
T
N
Y
T
I
L
F
T
V
S
I
R
T
L
R
R
P
Y
F
R
K
M
E
N
Q
D
A
L
V
C
I
S
E
S
V
P
E
-
P
I
V
E
--
W
V
L
C
V
V
K
K
E
E
K
V
L
H
E
L
----------------------------
F
G
T
-------------
D
-------
I
R
C
C
A
R
N
E
L
G
R
E
C
T
R
------
L
F
T
I
D
L
N
Q
T
P
Q
T
T
L
P
Q
L
F
L
K
V
G
E
P
L
-----------
W
I
R
C
K
A
V
H
V
N
H
G
F
--
G
L
---------
T
W
E
L
E
N
K
A
L
E
E
G
N
Y
F
E
M
S
----
T
Y
S
T
N
R
T
M
I
R
I
L
F
A
F
V
S
S
V
A
R
N
D
TG
Y
Y
T
C
S
S
S
K
H
P
S
Q
S
A
L
V
T
I
V
E
K
G
F
I
N
A
T
E
----------
D
Y
E
I
----
D
Q
Y
E
E
F
C
F
S
V
R
-----
F
K
A
Y
P
Q
---
I
R
C
T
W
T
----------
F
S
R
K
S
F
P
----
C
E
Q
K
G
L
D
N
G
Y
S
I
S
K
F
C
N
H
K
H
Q
P
G
---
E
Y
I
F
H
A
E
N
D
D
A
Q
F
T
K
M
F
T
L
N
-------------------------
23
HHSearch
55.36
26%
-4
- C4 -
2WSH
1
END2_BPT4
A:
[34-139]
-------------------
L
S
I
P
N
K
Y
N
V
I
Y
A
I
A
I
----------------
N
D
E
L
V
Y
I
G
K
T
K
------------------
N
L
R
K
R
I
N
Y
Y
R
T
A
-
I
N
R
KDKT
S
D
-
S
T
-
K
S
A
L
I
H
---------
S
A
L
K
E
G-
S
K
----
V
E
F
Y
A
R
----
Q
----
C
-
F
N
L
S
M
T
N
EL
G
T
M
T
I
A
T
I
D
L
E
A
P
L
F
I
K
L
F
N
P
P
W
N
I
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
Fugue
53.99
18%
-49
- C4 -
1MK0
2
TEV1_BPT4
A:
[1-97]
-----------------------
M
K
S
G
I
Y
Q
I
K
N
T
----------------
L
N
N
K
V
Y
V
G
S
A
K
------------------
D
F
E
K
R
W
K
R
H
F
K
D
-
L
------
E
K
-
G
CH
S
S
I
K
L
Q
---------
R
S
F
----
N
K
HGNV
F
E
C
S
I
L
----
E
E
I
P
Y
E
-
K
-------------
D
L
I
I
E
R
A
N
F
W
I
K
E
L
N
S
K
I
N
G
Y
N
I
A
D
A
T
F
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
53.38
22%
-54
- C4 -
3MX1
-
?
A:
[44-157]
-----------------------
Q
G
A
G
V
Y
A
L
Y
Y
T
GHYSLY
D
E
Y
S
R
I
N
R
LA
Y
N
L
P
I
Y
V
G
K
A
V
P
AGWRQSRISDHETRAGS
E
L
S
N
R
I
R
E
H
G
R
N
-
I
------
A
K
-----
T
S
N
L
-----------
D
L
----
C
D
----
F
S
C
R
F
V
----
I
F
E
--
A
-
T
GS-----------
D
M
I
S
T
V
Q
A
A
L
I
K
I
Y
K
P
L
W
N
T
V
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
52.83
19%
-58
- C4 -
1MK0
2
TEV1_BPT4
A:
[2-88]
------------------------
K
S
G
I
Y
Q
I
K
N
T
----------------
L
N
N
K
V
Y
V
G
S
A
K
------------------
D
F
E
K
R
W
K
R
H
F
K
D
-
L
------
E
K
G
C
H-
S
S
I
K
L
Q
---------
R
S
F
N
K
HG
N
V
----
F
E
C
S
I
L
E
E
I
-
P
----
Y
E
K
-------------
D
L
I
I
E
R
A
N
F
W
I
K
E
L
N
S
K
I
N
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------