@TOME V2.3
(Nov 2016)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
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Column output:
Score:
Atome Rank Value
Tools Score
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Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
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Structural Clustering:
Cluster Num
3D-Jury Struct. Score
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Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
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Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
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Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0954: (2016-03-20 )
MRAILIGVLIILLIAMILIVLLPAILAMVGAVLGFWSLKKLLEARSVGEKVIYGVLIGVGALIILANLKGILVVVIIGAIIYFLTRNKNKPRKNDDVFDYPYNK
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10----.......-----.20.......---.30........40........50....----....60........70......-------..80........90.-.-......--100..--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MRAILIGVLII----LLIAMIL-----IVLLPAILAM---VGAVLGFWSLKKLLEARSVGEKVIYGV----LIGVGALIILANLKGILVVVII-------GAIIYFLTRNKNKPR-K-NDDVFD--YPYNK--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
82.74
14%
-146
- C13 -
2K5R
-
?
A:
[1-97]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
D
R
K
L
L
H
L
L
C
S
----
P
D
T
R
Q
P
L
-----
S
L
L
E
S
K
G
L
E
A
---
L
N
K
A
I
V
S
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T
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Q
R
--
A
D
G
S
I
Q
N
Q
S
L
H
E
A
----
L
I
T
R
D
R
K
Q
V
F
R
I
E
D
S
I
P
V
--
L
L
-------
P
E
E
A
I
A
T
I
Q
I
A
N
F
P
D
-
K
-
L
E
H
-----
H
H
H
H
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
78.17
21%
-170
- C15 -
4WZ9
4
?
A:
[40-926]
QAVDERYRLPTT
S
I
P
I
H
YD
L
H
L
R
T
EIHRNER
T
F
T
G
T
V
G
I
Q
L
Q
V
VQATD
K
L
V
M
H
N
R
GLVMS
S
A
K
V
S
S
LPNGVT
G
A
P
T
L
IG
D
V
Q
Y
S
T
D
TTFE
H
I
T
F
T
S
P
T
I
L
Q
P
G
T
Y
L
L
E
V
A
F
Q
G
R
L
A
TNDDGF
Y
V
S
S
Y
V
A
DNG
E
R
R
Y
L
A
T
T
Q
F
ESTSARMAFPCYDEPGL
K
A
T
F
T
V
S
I
T
H
S
LS
Y
K
A
I
S
NMPQK
T
T
T
D
I
ET
D
M
R
T
T
F
F
E
K
T
P
A
M
S
TYL
L
A
F
V
V
SD
F
Q
L
R
L
S
GA
Q
R
V
Y
V
RPNAFNEA
T
F
A
L
E
A
G
V
K
I
L
K
V
L
D
D
H
L
GIPYDTYMP
K
L
D
Q
I
A
I
PDFAAGAMENWG
L
V
T
Y
REQALLFNPAVST
Y
R
G
K
T
N
V
A
T
T
I
A
H
E
Y
A
H
QWFGNLVSPEWWEY
I
W
L
N
E
G
F
A
T
L
Y
E
F
Y
A
L
D
M
A
Y
PGQEYWELFNQQV
I
Q
Y
A
M
G
Q
D
G
QASTRPM
N
W
N
A
A
T
P
G
E
I
S
A
L
FDRVAY
D
K
S
G
S
V
L
N
M
M
R
H
----
V
L
G
D
D
N
W
-----
K
A
G
L
K
A
Y
L
T
D
R
AL
Q
G
A
V
--
D
E
Q
L
Y
A
G
L
Q
S
A
I
E
G
K
G
V
L
P
N
G
----
V
T
V
A
Q
I
M
R
T
W
T
N
E
A
G
Y
P
V
L
N
V
R
R
SYDT--
G
D
V
I
I
S
Q
E
R
F
Y
N
D
R
K
-
V
P
N
T
N
I
W
M
--
I
P
Y
N
Y
V
H
QAKADFNEFDD
F
Q
W
L
ATK
A
A
R
I
E
T
TVPAN
E
W
I
V
F
NKQQVGY
Y
R
V
N
Y
D
E
H
N
W
E
L
I
T
N
A
L
H
E
NWASIH
R
L
N
R
A
Q
L
I
D
D
A
Y
W
L
A
R
S
GRLD
L
R
V
A
L
R
F
M
TYLRNERE
Y
A
P
W
T
A
A
N
V
A
L
T
Y
F
N
N
R
L
RGTAE
Y
H
N
F
L
I
F
V
D
A
L
IEDIYSLLTIDAVSPDDT
L
L
H
K
Y
L
V
Q
T
I
S
T
W
A
C
S
M
GY
T
D
C
L
M
K
T
A
A
L
L
K
A
E
A
S
GTGPAVHPDI
A
S
V
T
Y
C
Y
GMRSAL
E
S
E
F
Q
Y
L
Y
R
K
M
M
N
SKN
L
A
E
R
T
M
L
I
D
S
L
G
C
SNN
K
E
F
L
K
A
F
L
T
T
A
L
GSINYR
A
D
E
R
R
R
V
V
Q
A
I
Y
S
GG
R
T
G
V
D
A
L
I
E
F
L
M
D
P
A
L
V
N
E
F
V
S
T
L
S
T
S
T
L
N
S
A
L
S
A
I
A
S
R
TNN
V
E
E
M
N
K
L
N
A
L
I
T
A
L
GSRVN
S
Q
T
A
A
N
L
R
T
T
A
Q
A
N
L
D
W
V
N
G
F
E
G
L
M
L
S
N
F
L
AEA
26
Fugue
59.85
15%
-174
- C12 -
1ZPS
15
HIS3_METTH
A:
[8-131]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
N
I
L
L
N
F
R
H
N
I
NG
E
D
L
I
I
A
V
A
Q
DHETG
E
V
L
M
V
A
Y
M
N
R
---
E
A
L
R
R
T
L
E
T
G
T
A
H
Y
W
S
T
S
R
G
K
L
W
L
K
G
E
SSGH
V
Q
R
V
K
D
V
L
V
D
C
D
G
D
A
V
V
L
K
V
E
Q
E
GGACHT
G
Y
R
S
C
F
Y
R
S
I
D
G
D
E
L
-
K
-
V
R
E
D
A
V
--
K
V
F
D
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
55.16
20%
-135
* C15 *
2L9U
-
ERBB3_HUMAN
A:
[637-676]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
R
T
H
----
L
T
M
A
L
T
V
-----
I
A
G
L
V
V
I
F
M
M
---
L
G
G
T
F
L
Y
W
R
G
R
R
H
H
H
H
H
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
52.15
15%
-95
- C15 -
4TNJ
150
PSBT_THEEB
T:
[1-32]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
T
I
T
Y
V
F
I
F
A
C
I
-------
I
A
L
F
F
F
A
I
F
F
R
E
P
P
R
-
I
-
T
K
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
48.36
31%
235
- C15 -
2XPI
-
HCN1_SCHPO
B:
[4-24]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
R
R
N
P
T
A
I
Q
I
T
-
A
E
D
V
L
A
--
Y
D
E
E
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
42.94
8%
-35
- C15 -
3QE7
-
URAA_ECOLI
A:
[391-410]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
M
A
L
A
T
I
V
G
-------
I
G
L
-
S
L
I
F
K
L
I
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
42.18
21%
162
- C10 -
3H75
-
?
A:
[323-336]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
A
Q
-
G
-
K
P
D
S
Y
R
--
Y
P
F
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
41.87
9%
191
* C14 *
3AA1
1
C:
[2-22]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
L
A
H
P
T
R
D
R
-
A
-
K
I
Q
H
S
R
--
R
P
P
T
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
40.55
19%
219
- C11 -
3L1L
-
ADIC_ECO57
A:
[424-439]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
A
L
N
Y
N
R
L
H
K
N
-
P
-
Y
P
L
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
39.56
18%
127
- C13 -
2NPI
-
PCF11_YEAST
C:
[24-45]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
-------
Q
S
R
N
W
Y
L
S
D
S
Q
W
A
A
F
-
K
-
D
D
E
I
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
39.10
21%
271
* C13 *
2CNY
-
?
B:
[1-19]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
F
L
P
N
S
E
Q
Q
K
-
S
-
V
D
A
V
F
S
--
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
28.65
18%
154
- C7 -
2KNC
-
ITB3_HUMAN
B:
[712-722]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
I
W
K
L
L
I
T
I
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
28.47
46%
910
- C9 -
1X9T
-
SPIKE_ADE02
B:
[10-18]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
F
N
PV
Y
P
Y
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
28.01
11%
371
- C4 -
2KS1
-
B:
[165-173]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
F
M
R
R
R
H
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
26.36
10%
189
- C14 -
2YEN
-
GM3C_CONCN
A:
[2-22]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
C
C
N
G
P
K
-
G
-
C
S
S
K
W
C
--
R
D
H
A
R
CC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
24.71
33%
661
- C2 -
2L2T
-
ERBB4_HUMAN
A:
[74-79]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
V
R
R
K
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
24.61
25%
476
- C6 -
2KLU
-
CD4_HUMAN
A:
[392-399]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
F
S
V
R
S
R
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
21.68
13%
415
- C5 -
2JWA
-
ERBB2_HUMAN
A:
[73-80]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
L
I
K
R
R
Q
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
20.13
14%
534
- C3 -
2M20
-
EGFR_HUMAN
A:
[25-31]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
F
I
R
R
R
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------