@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo1111: (2016-03-21 )
LNNKTSWIEELKEKRMAYGLSQNKLAVASGITRQYLSDIENEKVIPTEQVKTALLDSLERFNPDNPLEMLFDYVRIRFPTDNVEKIIEEILHLNIDYMIHEDFGYYSYPEHYRFGDIMVMVSYDITKGVLLELKGKGCRQYENFLLAQHRSWYDFFTDCLEVNGVFKRLDLAINDKVGILDIPELARKSEQEECISIFRTFKNYRSGELVHRDEKSDMGNTLYIGSLKSEVYFCIYEKDYEQFIKNDIPLEDPEVKNRFEIRLKNDRATHAIQDLLAYRNAEKTAFEIINRYIRFADKDTTKRRSQWQTSERWEWFIGKNRGELRLTTKPEPYSYERTLNWLRHQVAPTLKVASILDVLNETDIIPAMIRDANLTEKHEKLIEQQNLAVEDVIV
Atome Classification :
(20 SA)
---.........10......------..20.......-----.30........40------..-.-.-..-...50.......----.60------........70........80-........------.90........100.......110..-....---.120.....--..130.......140.......150.......160........170.......180.......190.......200.......210.......220.......230---.......240.......250.......260.......270.....-..280.......290.....-..300.......310.......320.......330.......340.......350.......360........370.......380.......390..
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---LNN
K
T
S
W
I
E
E
L
K
E
K
R
M
A------YGLSQNK
L
A
V
A
-----S
G
I
T
R
Q
Y
L
S
DIE-------NE-K-V-I
P
-
T
E
Q
V
K
T
A
L
L
D
S
L
----
E
RF------NPD
N
P
L
E
M
L
F
D
Y
V
R
I
RFPT--
D
N
V
E
K
I
I
E
------
E
I
L
HLN
I
D
Y
M
I
HEDFGYYSYPEHYRF-G
D
I
M
---
V
M
V
S
YDIT
K
--
G
V
L
L
E
LKGK
G
C
R
Q
Y
E
N
F
L
L
A
Q
H
R
S
W
Y
D
F
F
T
D
C
L
-
E
V
N
G
V
F
K
RL
D
L
A
INDKVGILD
I
P
E
L
A
R
K
S
E
Q
E
E
C
I
S
I
F
R
T
F
K
NYRSGE
L
V
HRDEKSDMG
N
T
L
Y
I
GSLKS
E
V
Y
---
F
C
I
Y
E
K
D
Y
E
Q
F
I
KNDIPLEDPEVK
N
R
F
E
I
R
LKNDR
A
T
H
A
I
Q
D
L
L
A
-YRNA
E
K
T
A
F
E
I
I
N
R
Y
I
RFAD-KDT
T
K
R
RSQWQTSE
R
W
E
W
F
I
GKNRG
E
L
R
L
TTKPEP
Y
S
Y
E
R
T
L
N
W
L
R
H
QVA
P
T
L
K
V
A
S
I
L
D
V
LNE-TD
I
I
P
A
M
IRDANL
T
E
K
H
E
K
L
I
E
Q
QNLAVEDVIV
43
Fugue
80.77
30%
-80
* C3 *
4CIJ
-
?
A:
[3-269]
--------------------------------------------------------------------------------------------------
M
S
G
L
K
P
C
V
D
W
L
Q
V
T
F
K
T
GQ
D
S
V
K
K
C
V
E
K
L
E
K
V
F
E
I
L
G
L
N
E
A
E
F
L
P
L
K
N
G
K
Y
G
Y
K
Q
G
V
A
F
Q
G
N
P
V
---
L
A
V
Y
Y
D
G
A
D
DM
G
I
H
V
E
M
T
G
Q
G
C
R
L
F
E
L
H
T
---
S
I
N
W
Y
E
L
F
Y
R
L
V
Y
E
Y
E
V
N
I
T
R
L
D
V
A
V
D
D
F
K
G
Y
F
K
I
N
T
L
V
K
K
L
K
D
D
E
V
T
S
---
R
F
K
K
A
R
H
I
E
N
I
V
I
E
G
G
E
T
I
G
H
T
L
Y
F
G
A
P
S
S
D
I
Q
---
V
R
F
Y
E
K
N
V
Q
M
G
M
-------
D
I
D
V
W
N
R
T
E
I
Q
L
R
D
D
R
A
H
V
V
A
Q
I
I
A
D
D
V
L
P
L
G
E
I
V
A
G
L
L
R
N
Y
I
Q
F
R
T
R
K
A
T
D
K
N
K
K
R
W
P
L
A
R
F
W
L
N
F
L
G
D
V
Q
----------
P
L
R
I
A
K
Q
M
--------------------------------------------------------
52
Fugue
53.62
16%
-33
- C1 -
4NTC
1
?
A:
[2-326]
--M
S
I
G
K
L
L
S
N
G
A
L
L
V
D
V
L
I
------
I
G
A
G
P
A
G
L
S
T
A
-----
T
G
L
A
R
Q
L
H
T
A
V
V
F
D
SGVYR
N
A
-
K
-
T
-
Q
H
-
M
H
N
V
L
G
W
D
H
R
N
P
----
A
E
L
------
R
A
A
G
R
A
D
L
T
T
R
Y
S
T
I
Q
F
Q
N
--
S
T
I
E
A
I
R
Q
------
V
E
T
N
--------
Q
L
F
E
A
R
D
N
E
G
H
S
W
Y
-
G
R
K
V
---
V
L
A
T
----------------
G
V
R
D
I
P
L
D
I
E
G
Y
S
E
C
W
A
N
G
I
Y
H
C
L
-
F
C
D
G
Y
E
E
R
G
----
Q
E
T
V
G
V
L
A
L
G
P
I
A
N
---
P
A
R
A
L
H
L
A
R
M
A
L
R
L
S
E
S
V
T
I
Y
T
N
G
N
E
Q
L
A
K
E
I
Q
Q
A
A
E
E
S
P
V
G
ASG
L
K
F
E
A
R
P
I
R
R
F
E
K
G
D
-------
V
A
K
T
V
I
V
H
L
G
E
S
E
S
K
T
E
--
G
F
L
V
-
Y
N
----
P
Q
T
E
V
N
G
P
F
A
K
Q
L
A
-
L
N
M
T
E
G
G
D
--------------------
I
L
T
T
P
P
F
Y
E
------------
T
S
V
P
G
V
F
A
V
G
D
C
A
T
P
L
K
A
V
T
P
A
V
S
M
G
S
L
A
A
G
G
L
V
A
Q
L
Q
A
Q
A
L
-------
49
Fugue
51.28
17%
-27
- C3 -
4CWC
-
REPD_STAAU (first)
A:
[6-275]
------------------
P
Q
------
P
E
L
S
F
D
A
M
T
I
V
-----
G
N
L
N
K
T
N
A
K
K
L
S
-------
D
F
-
M
-
S
-
T
E
-
P
---------
Q
I
----
R
L
W
------
D
I
L
Q
------
T
K
F
K
A
K
A
L
Q
--
E
K
V
Y
I
E
Y
D
------
K
V
K
A
D
S
W
D
---------------------------------
R
R
--
N
M
R
V
E
F
N
P
N
K
L
T
H
E
E
M
L
W
L
K
Q
N
--
I
I
D
Y
M
E
D
------
D
G
F
T
R
L
D
L
A
F
D
F
E
D
---
D
L
S
D
Y
Y
A
M
T
D
K
A
V
K
K
T
I
F
Y
G
--------------
R
N
G
K
P
E
T
K
Y
F
G
V
R
D
S
D
R
F
---
I
R
I
Y
N
K
K
Q
E
R
K
D
N
A
D
V
E
-
V
M
S
E
H
L
W
R
V
E
I
E
L
K
R
D
M
V
D
Y
W
N
D
C
F
N
D
-
L
H
I
L
K
P
D
W
S
S
L
E
K
V
K
D
Q
A
M
I
-
Y
M
L
I
H
E
E
S
T
W
G
K
-----------------
L
E
R
R
T
K
N
K
Y
R
E
M
L
K
S
I
-----------------
S
E
-
I
D
L
T
D
L
M
--
K
L
T
L
K
E
N
E
K
Q
L
Q
K
Q
I
E
F
W
Q
R
----
29
HHSearch
49.19
25%
-2
- C2 -
3QQ6
-
SINR_BACSU
A:
[-1-56]
-------
H
M
I
G
Q
R
I
K
Q
Y
R
K
E
------
K
G
Y
S
L
S
E
L
A
E
K
-----
A
G
V
A
K
S
Y
L
S
S
I
E
-------
R
N
L
Q
-
T
-
N
P
-
S
I
Q
F
L
E
K
V
S
A
V
L
----
D
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
Fugue
47.96
30%
0
- C2 -
1Y7Y
-
?
A:
[5-73]
HDH
Y
A
D
L
V
K
F
G
Q
R
L
R
E
L
R
T
A
------
K
G
L
S
Q
E
T
L
A
F
L
-----
S
G
L
D
R
S
Y
V
G
G
V
E
-------
R
G
-
Q
-
R
-
N
V
-
S
L
V
N
I
L
K
L
A
T
A
L
---------------
D
I
E
P
R
E
L
F
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
42
HHSearch
47.44
26%
14
* C2 *
2B5A
1
?
A:
[8-64]
------
K
R
K
F
G
R
T
L
K
K
I
R
T
Q
------
K
G
V
S
Q
E
E
L
A
D
L
-----
A
G
L
H
R
T
Y
I
S
E
V
E
-------
R
G
-
D
-
R
-
N
I
-
S
L
I
N
I
H
K
I
C
A
A
L
----
D
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
41
HHSearch
46.22
27%
10
- C2 -
1B0N
2
SINR_BACSU
A:
[1-61]
--------
M
I
G
Q
R
I
K
Q
Y
R
K
E
------
K
G
Y
S
L
S
E
L
A
E
K
-----
A
G
V
A
K
S
Y
L
S
S
I
E
-------
R
N
L
Q
-
T
-
N
P
-
S
I
Q
F
L
E
K
V
S
A
V
L
----
D
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
HHSearch
44.82
17%
16
- C2 -
3B7H
-
?
A:
[4-62]
-----
D
G
E
F
V
S
E
H
L
M
E
L
I
T
Q
------
Q
N
L
T
I
N
R
V
A
T
L
-----
A
G
L
N
Q
S
T
V
N
A
M
F
-------
E
G
-
R
-
S
K
R
P
-
T
I
T
T
I
R
K
V
C
G
T
L
----
G
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
45
Fugue
44.81
30%
4
- C2 -
1UTX
4
?
A:
[1-66]
--------
M
I
I
N
N
L
K
L
I
R
E
K
------
K
K
I
S
Q
S
E
L
A
A
L
-----
L
E
V
S
R
Q
T
I
N
G
I
E
-------
K
N
-
K
-
Y
-
N
P
-
S
L
Q
L
A
L
K
I
A
Y
Y
L
---------------
N
T
P
L
E
D
I
F
Q
W
Q
P
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
50
Fugue
44.63
13%
-48
- C2 -
1ZZC
3
HPPE_STRWE
A:
[5-198]
---
K
T
A
S
T
G
F
A
E
L
L
K
D
R
R
E
Q
------
V
K
M
D
H
A
A
L
A
S
L
-----
L
G
E
T
P
E
T
V
A
A
W
E
-------
N
G
-
E
-
G
-
G
E
L
T
L
T
Q
L
G
R
I
A
H
V
L
GTS
I
G
A
L
T
PPAGN
D
L
D
D
G
V
I
I
Q
M
P
Y
Y
V
Y
N
C
L
V
--
R
T
K
R
A
P
S
L
------
V
P
L
V
V
D
V
L
T
D
N
P
D
D
A
K
F
N
S
G
H
A
G
N
E
F
-
L
F
V
L
EGE
I
H
M
K
W
G
D
K
N
--
P
K
E
A
L
L
P
T
G
A
S
M
F
V
E
E
H
V
P
H
A
F
T
A
A
K
G
T
G
S
A
K
L
-
I
A
V
N
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
HHSearch
44.03
33%
32
- C2 -
3KXA
10
?
A:
[68-122]
--------
A
G
G
E
T
F
V
S
L
R
M
K
------
K
G
F
T
Q
S
E
L
A
T
A
-----
A
G
L
P
Q
P
Y
L
S
R
I
E
-------
N
S
-
K
-
Q
-
S
L
-
Q
D
K
T
V
Q
K
L
A
N
A
L
----
G
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
43.60
22%
25
- C2 -
3U3W
3
?
A:
[3-58]
------
A
E
K
L
G
S
E
I
K
K
I
R
V
L
------
R
G
L
T
Q
K
Q
L
S
E
N
-----
I
-
C
H
Q
S
E
V
S
R
I
E
-------
S
G
-
A
-
V
-
Y
P
-
S
M
D
I
L
Q
G
I
A
A
K
L
----
Q
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
43.46
21%
26
- C2 -
1ADR
-
RPC2_BPP22
A:
[2-59]
-----
N
T
Q
L
M
G
E
R
I
R
A
R
R
K
K
------
L
K
I
R
Q
A
A
L
G
K
M
-----
V
G
V
S
N
V
A
I
S
Q
W
E
-------
R
S
-
E
-
T
-
E
P
-
N
G
E
N
L
L
A
L
S
K
A
L
----
Q
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
43.34
28%
33
- C2 -
3IVP
-
?
A:
[9-66]
-----
D
F
R
A
L
G
L
A
I
K
E
A
R
K
K
------
Q
G
L
T
R
E
Q
V
G
A
M
-----
I
E
I
D
P
R
Y
L
T
N
I
E
-------
N
K
-
G
-
Q
-
H
P
-
S
L
Q
V
L
Y
D
L
V
S
L
L
----
N
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
HHSearch
43.32
21%
30
- C2 -
2KPJ
-
?
A:
[6-63]
-----
Q
K
A
I
F
S
E
N
L
N
S
Y
I
A
K
------
S
E
K
T
Q
L
E
I
A
K
S
-----
I
G
V
S
P
Q
T
F
N
T
W
C
-------
K
G
-
I
-
A
-
I
P
-
R
M
G
K
V
Q
A
L
A
D
Y
F
----
N
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
HHSearch
43.24
21%
21
- C2 -
2R1J
2
RPC2_BPP22
L:
[3-59]
------
T
Q
L
M
G
E
R
I
R
A
R
R
K
K
------
L
K
I
R
Q
A
A
L
G
K
M
-----
V
G
V
S
N
V
A
I
S
Q
W
E
-------
R
S
-
E
-
T
-
E
P
-
N
G
E
N
L
L
A
L
S
K
A
L
----
Q
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
41.90
29%
29
- C2 -
2WIU
1
HIPB_ECOLI
B:
[9-78]
-----
S
P
T
Q
L
A
N
A
M
K
L
V
R
Q
Q
------
N
G
W
T
Q
S
E
L
A
K
K
-----
I
G
I
K
Q
A
T
I
S
N
F
E
-------
N
N
-
P
-
D
-
N
T
-
T
L
T
T
F
F
K
I
L
Q
S
L
----
E
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
41.42
38%
45
- C2 -
1Y7Y
-
?
A:
[16-65]
-----------
Q
R
L
R
E
L
R
T
A
------
K
G
L
S
Q
E
T
L
A
F
L
-----
S
G
L
D
R
S
Y
V
G
G
V
E
R
GQR---
N
V
-
S
-
L
-
V
N
-
I
L
K
L
A
T
A
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
41.34
12%
22
- C2 -
3OP9
1
?
A:
[6-65]
-----
I
Q
H
Q
F
A
E
N
L
S
R
L
K
K
E
------
H
G
L
K
N
H
Q
I
A
E
L
-----
L
N
V
Q
T
R
T
V
A
Y
Y
M
-------
S
G
-
E
-
T
-
K
P
-
D
I
E
K
L
I
R
L
A
T
Y
F
----
H
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
HHSearch
39.91
16%
32
- C2 -
3QWG
-
ESPR_MYCTU
A:
[4-71]
-------
T
T
F
A
A
R
L
N
R
L
F
D
T
VYPPGR
G
P
H
T
S
A
E
V
I
A
A
L
K
A
E
G
I
T
M
S
A
P
Y
L
S
Q
L
R
-------
S
G
-
N
R
T
-
N
P
-
S
G
A
T
M
A
A
L
A
N
F
F
----
R
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------