@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo1116: (2016-03-21 )
MKTKMPEMLSFISEEAVSRKMTSEEIAAHFGYDKHHFSRKFKEINGFSVVEFLSSLKVEKAIIELDEEVRILDLQEHSGFESSGSFTNTFKKYTGSSPRKYKTEMNDIFYDMKRFENDNKDKSIAHFQENNDSFCNVTIDVPDEFEKGIIFIGLFRTLIPNHMPISGLATKNLIGNQLKNIPSGDYYLLACAISQSNNILSYFNLSNSLRGKEDEKLSFPKCSGNHYAIKLRKPIPEDPPILANVGKILISCLKNTI
Atome Classification :
(21 SA)
.........10........20........30........40....----------..------------..50........60-------....-.--.--..70....-.....80...----.....90........100.......110.......120-----------------.......130.......140..------.....150.......160....------...170.......180.......190.......200..-.....210.......220.......-230--------------...-......---240.......250.....-----------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
MKT
K
M
P
E
M
L
S
F
I
S
E
E
A
V
S
RKM
T
S
E
E
I
A
A
HFGY
D
K
H
H
F
S
R
K
F
K
EIN----------G
F
------------
S
V
V
E
F
L
S
SL
K
V
E
K
A
-------
I
I
EL-D--E--E
V
R
-
I
L
D
L-QEHSGFESSG----S
F
T
N
T
F
K
K
YTGSSP
R
K
Y
K
T
E
M
N
D
I
F
Y
D
M
K
R
FENDNKDK-----------------S
I
A
H
FQENNDS
F
C
N
V
T
I
DV
P
D
E
------FEK
G
I
I
F
I
G
L
F
R
T
LIPNHMPIS------
G
L
A
T
K
N
L
I
G
N
Q
L
KNIPSG
D
Y
Y
L
L
A
C
A
ISQSN
N
I
L
S
Y
FN-LSNSLRGKEDEKLSFPKCSG
N
H
Y
A
I
-
K
----------------LRK-PIPEDP---
P
I
L
A
N
V
G
K
I
L
I
S
C
L
K
NTI-----------------------------------
21
HHSearch
65.49
23%
-35
- C3 -
3OOU
1
?
A:
[5-107]
--
P
I
I
Q
N
V
L
S
Y
I
T
E
H
F
S
E
-
G
M
S
L
K
T
L
G
N
D
F
H
I
N
A
V
Y
L
G
Q
L
F
Q
K
E
M
----------
G
E
------------
H
F
T
D
Y
L
N
R
Y
R
V
N
Y
A
-------
K
E
E
L
L
Q
--
T
--
K
D
N
-
L
T
I
I
-
A
G
K
S
G
Y
T
D
M
A
----
Y
F
Y
R
Q
F
K
K
H
T
G
E
T
P
N
R
Y
R
K
I
H
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
63.51
24%
-35
- C3 -
3OOU
-
?
A:
[7-104]
----
I
Q
N
V
L
S
Y
I
T
E
H
-
F
S
E
G
M
S
L
K
T
L
G
N
D
F
H
I
N
A
V
Y
L
G
Q
L
F
Q
K
E
M
----------
G
E
------------
H
F
T
D
Y
L
N
R
Y
R
V
N
Y
A
-------
K
E
E
L
-
L
--
Q
--
T
K
D
-
N
L
T
I
I
A
G
K
S
G
Y
T
D
M
A
----
Y
F
Y
R
Q
F
K
K
H
T
G
E
T
P
N
R
Y
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
62.45
24%
-46
- C3 -
3LSG
1
?
A:
[2-103]
--
N
A
K
E
L
I
Q
N
I
I
E
E
S
Y
T
D
S
Q
F
T
L
S
V
L
S
E
K
L
D
L
S
S
G
Y
L
S
I
M
F
K
K
N
F
----------
G
I
------------
P
F
Q
D
Y
L
L
Q
K
R
M
E
K
A
-------
K
L
L
L
L
T
--
T
--
E
L
K
-
N
Y
E
I
-
A
E
Q
V
G
F
E
D
V
N
----
Y
F
I
T
K
F
K
K
Y
Y
Q
I
T
P
K
Q
Y
R
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
43
Fugue
61.50
20%
-3
- C2 -
3J6V
-
RT05_BOVIN
E:
[89-430]
F
F
T
K
L
T
------
A
D
E
L
W
K
G
A
L
A
E
T
G
A
G
A
R
K
G
R
G
K
R
T
K
R
K
R
R
K
D
L
N
RGQIIGEGRR
G
F
LWPGLNAPLMKS
G
A
I
Q
T
I
T
Q
R
S
K
E
E
Q
EKVEADM
V
Q
Q
R
-
E
--
E
WD
R
K
R
-
K
M
K
V
-
K
R
E
R
G
W
S
G
N
S
WGGI
S
L
G
P
P
D
P
G
P
N
G
E
T
Y
D
D
F
D
T
R
I
L
E
V
R
N
V
F
N
M
T
A
K
E
G
R
K
R
SVRVLVAVGNGRGAAGF
A
I
G
K
A
T
E
R
A
D
A
F
R
K
A
K
N
R
A
V
H
Y
LHYIER
Y
E
D
H
T
I
Y
H
D
I
S
L
T
F
K
R
T
H
I
K
M
K
KQPRGY
G
L
R
C
H
R
A
I
T
T
I
C
R
L
I
G
I
K
D
M
Y
---
A
K
V
S
G
S
V
N
M
L
S
L
T
R
G
L
F
Q
G
L
S
R
Q
E
T
H
Q
Q
L
A
D
K
K
S
L
H
V
V
E
F
-
R
EECGPLPIVVASPQGA
L
R
K
D
P
E
P
E
D
E
VPD
I
K
L
D
W
D
D
V
K
A
V
Q
G
M
K
R
S
V
WSGLKRAAT--------------------------
17
HHSearch
61.18
17%
-40
- C3 -
3MN2
2
?
A:
[2-107]
--
N
A
V
R
Q
V
E
E
Y
I
E
A
N
W
M
R
-
P
I
T
I
E
K
L
T
A
L
T
G
I
S
S
R
G
I
F
K
A
F
Q
R
S
R
----------
G
Y
------------
S
P
M
A
F
A
K
R
V
R
L
Q
H
A
-------
H
N
L
L
S
D
GA
T
--
P
T
T
-
V
T
A
A
-
A
L
S
C
G
F
S
N
L
G
----
H
F
A
R
D
Y
R
D
M
F
G
E
K
P
S
E
T
L
Q
R
A
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
60.68
23%
-50
- C3 -
2K9S
-
A:
[1-104]
M
D
N
R
V
R
E
A
C
Q
Y
I
S
D
H
L
A
D
S
N
F
D
I
A
S
V
A
Q
H
V
C
L
S
P
S
R
L
S
H
L
F
R
Q
Q
L
----------
G
I
------------
S
V
L
S
W
R
E
D
Q
R
I
S
Q
A
-------
K
L
L
L
-
S
--
T
T
-
R
M
P
-
I
A
T
V
-
G
R
N
V
G
F
D
D
Q
L
----
Y
F
S
R
V
F
K
K
C
T
G
A
S
P
S
E
F
R
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
60.51
21%
-36
- C3 -
3W6V
2
?
A:
[38-143]
--
D
P
L
A
E
V
V
A
W
A
L
E
H
L
H
E
-
Q
F
D
V
E
T
L
A
A
R
A
Y
M
S
R
R
T
F
D
R
R
F
R
S
L
T
----------
G
S
------------
A
P
L
Q
W
L
I
T
Q
R
V
L
Q
A
-------
Q
R
L
L
E
T
--
S
--
D
Y
S
-
V
D
E
V
-
A
G
R
C
G
F
R
S
P
V
----
A
L
R
G
H
F
R
R
Q
L
G
S
S
P
A
A
Y
R
A
A
Y
R
A
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
60.16
23%
-45
- C3 -
2K9S
-
A:
[1-106]
M
D
N
R
V
R
E
A
C
Q
Y
I
S
D
H
L
A
D
S
N
F
D
I
A
S
V
A
Q
H
V
C
L
S
P
S
R
L
S
H
L
F
R
Q
Q
L
----------
G
I
------------
S
V
L
S
W
R
E
D
Q
R
I
S
Q
A
-------
K
L
L
L
S
T
--
T
--
R
M
P
-
I
A
T
V
-
G
R
N
V
G
F
D
D
Q
L
----
Y
F
S
R
V
F
K
K
C
T
G
A
S
P
S
E
F
R
A
G
C
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
Fugue
60.12
12%
-15
- C3 -
1D5Y
2
ROB_ECOLI
A:
[1-292]
Q
A
G
I
I
R
D
L
L
I
W
L
E
G
H
-
L
D
Q
P
L
S
L
D
N
V
A
A
K
A
G
Y
S
K
W
H
L
Q
R
M
F
K
D
V
T
----------
G
H
------------
A
I
G
A
Y
I
R
A
R
R
L
S
K
S
-------
A
V
A
L
-
R
--
L
T
-
A
R
P
-
I
L
D
I
-
A
L
Q
Y
R
F
D
S
Q
Q
----
T
F
T
R
A
F
K
K
Q
F
A
Q
T
P
A
L
Y
R
R
S
P
E
W
S
A
F
G
I
R
P
P
L
R
L
G
E
F
T
-----------------
M
P
E
H
K
F
V
T
L
E
D
T
P
L
I
G
V
T
Q
S
Y
S
------
C
S
-----
L
E
Q
I
S
D
F
R
H
E
M
R
Y
Q
F
------
W
H
D
F
L
G
N
A
P
T
I
P
P
V
L
Y
G
L
N
E
T
R
P
S
Q
D
K
D
D
E
Q
E
V
F
Y
T
T
A
-
L
A
Q
D
Q
A
D
G
Y
V
L
T
G
H
P
V
M
L
Q
G
G
E
Y
V
M
F
T
----------------
Y
E
G
-
L
G
T
G
V
Q
---
E
F
I
L
T
V
Y
G
T
C
M
P
M
L
N
L
T
R
R
K
G
Q
D
I
E
R
Y
YPAEDDRP
I
N
L
R
C
E
L
L
I
P
I
R
R
K
L
A
A
A
2
PsiBlast_PDB
58.79
34%
-37
- C3 -
1BL0
2
MARA_ECOLI
A:
[16-110]
-------
I
L
D
W
I
-
E
D
N
L
E
S
P
L
S
L
E
K
V
S
E
R
S
G
Y
S
K
W
H
L
Q
R
M
F
K
K
E
T
----------
G
H
------------
S
L
G
Q
Y
I
R
S
R
K
M
T
E
I
-------
A
Q
K
L
-
K
--
E
--
S
N
E
P
I
L
Y
L
-
A
E
R
Y
G
F
E
S
Q
Q
----
T
L
T
R
T
F
K
N
Y
F
D
V
P
P
H
K
Y
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
58.71
27%
-22
* C3 *
1BL0
2
MARA_ECOLI
A:
[9-124]
D
A
I
T
I
H
S
I
L
D
W
I
E
D
N
-
L
E
S
P
L
S
L
E
K
V
S
E
R
S
G
Y
S
K
W
H
L
Q
R
M
F
K
K
E
T
----------
G
H
------------
S
L
G
Q
Y
I
R
S
R
K
M
T
E
I
-------
A
Q
K
L
-
K
--
E
S-
N
E
P
-
I
L
Y
L
-
A
E
R
Y
G
F
E
S
Q
Q
----
T
L
T
R
T
F
K
N
Y
F
D
V
P
P
H
K
Y
R
M
T
N
M
Q
G
E
S
R
F
L
H
P
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
58.66
34%
-36
- C3 -
1XS9
2
MARA_ECOLI
A:
[19-113]
-------
I
L
D
W
I
-
E
D
N
L
E
S
P
L
S
L
E
K
V
S
E
R
S
G
Y
S
K
W
H
L
Q
R
M
F
K
K
E
T
----------
G
H
------------
S
L
G
Q
Y
I
R
S
R
K
M
T
E
I
-------
A
Q
K
L
-
K
--
E
--
S
N
E
P
I
L
Y
L
-
A
E
R
Y
G
F
E
S
Q
Q
----
T
L
T
R
T
F
K
N
Y
F
D
V
P
P
H
K
Y
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
57.97
21%
-25
- C3 -
3OIO
2
?
A:
[6-108]
-
Q
P
K
L
T
E
A
V
S
-
L
M
E
A
N
I
E
E
P
L
S
T
D
D
I
A
Y
Y
V
G
V
S
R
R
Q
L
E
R
L
F
K
Q
Y
L
----------
G
T
------------
V
P
S
K
Y
Y
L
E
L
R
L
N
R
A
-------
R
Q
L
L
-
Q
--
Q
--
T
S
K
S
I
V
Q
I
-
G
L
A
C
G
F
S
S
G
P
----
H
F
S
S
T
Y
R
N
H
F
N
I
T
P
R
E
E
R
A
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
57.93
24%
-33
- C3 -
1D5Y
2
ROB_ECOLI
A:
[3-111]
--
G
I
I
R
D
L
L
I
W
L
E
G
H
L
D
Q
-
P
L
S
L
D
N
V
A
A
K
A
G
Y
S
K
W
H
L
Q
R
M
F
K
D
V
T
----------
G
H
------------
A
I
G
A
Y
I
R
A
R
R
L
S
K
S
-------
A
V
A
L
R
L
--
T
--
A
R
P
-
I
L
D
I
-
A
L
Q
Y
R
F
D
S
Q
Q
----
T
F
T
R
A
F
K
K
Q
F
A
Q
T
P
A
L
Y
R
R
S
P
E
W
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
57.91
20%
-38
- C3 -
3OIO
2
?
A:
[7-110]
--
P
K
L
T
E
A
V
S
L
M
E
A
N
I
E
E
-
P
L
S
T
D
D
I
A
Y
Y
V
G
V
S
R
R
Q
L
E
R
L
F
K
Q
Y
L
----------
G
T
------------
V
P
S
K
Y
Y
L
E
L
R
L
N
R
A
-------
R
Q
L
L
Q
Q
--
T
--
S
K
S
-
I
V
Q
I
-
G
L
A
C
G
F
S
S
G
P
----
H
F
S
S
T
Y
R
N
H
F
N
I
T
P
R
E
E
R
A
Q
R
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
57.61
29%
-25
- C3 -
1BL0
2
MARA_ECOLI
A:
[11-120]
--
I
T
I
H
S
I
L
D
W
I
E
D
N
L
E
S
-
P
L
S
L
E
K
V
S
E
R
S
G
Y
S
K
W
H
L
Q
R
M
F
K
K
E
T
----------
G
H
------------
S
L
G
Q
Y
I
R
S
R
K
M
T
E
I
-------
A
Q
K
L
K
E
--
S
--
N
E
P
-
I
L
Y
L
-
A
E
R
Y
G
F
E
S
Q
Q
----
T
L
T
R
T
F
K
N
Y
F
D
V
P
P
H
K
Y
R
M
T
N
M
Q
G
E
S
R
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
55.00
25%
-20
- C3 -
3W6V
2
?
A:
[58-133]
-----------------------
E
T
L
A
A
R
A
Y
M
S
R
R
T
F
D
R
R
F
R
S
L
T
----------
G
S
------------
A
P
L
Q
W
L
I
T
Q
R
V
L
Q
A
-------
Q
R
L
L
-
E
T-
S
--
D
Y
S
-
V
D
E
V
-
A
G
R
C
G
F
R
S
P
V
----
A
L
R
G
H
F
R
R
Q
L
G
S
S
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
52.97
28%
-14
- C3 -
1D5Y
2
ROB_ECOLI
A:
[13-106]
-------------
E
G
H
L
D
Q
P
L
S
L
D
N
V
A
A
K
A
G
Y
S
K
W
H
L
Q
R
M
F
K
D
V
T
----------
G
H
------------
A
I
G
A
Y
I
R
A
R
R
L
S
K
S
-------
A
V
A
L
-
R
--
L
--
T
A
R
P
I
L
D
I
-
A
L
Q
Y
R
F
D
S
Q
Q
----
T
F
T
R
A
F
K
K
Q
F
A
Q
T
P
A
L
Y
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
51.36
16%
-32
- C3 -
3GBG
1
TCPN_VIBC3
A:
[169-273]
--
D
A
M
E
K
I
S
C
L
V
K
S
D
I
T
R
-
N
W
R
W
A
D
I
C
G
E
L
R
T
N
R
M
I
L
K
K
E
L
E
-
S
R
----------
G
V
------------
K
F
R
E
L
I
N
S
I
R
I
S
Y
S
-------
I
S
L
M
K
T
--
G
--
E
F
K
-
I
K
Q
I
-
A
Y
Q
S
G
F
A
S
V
S
----
Y
F
S
T
V
F
K
S
T
M
N
V
A
P
S
E
Y
L
F
M
L
T
G
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
49.08
22%
-13
- C3 -
4FE7
-
XYLR_ECOLI
A:
[325-404]
-----------------------
D
Q
V
L
D
A
V
G
I
S
R
S
N
L
E
K
R
F
K
E
E
V
----------
G
E
------------
T
I
H
A
M
I
H
A
E
K
L
E
K
A
R
------
S
L
L
I
-
S
--
T
--
T
L
S
-
I
N
E
I
-
S
Q
M
C
G
Y
P
S
L
Q
----
Y
F
Y
S
V
F
K
K
A
Y
D
T
T
P
K
E
Y
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
39
Fugue
40.10
31%
15
- C3 -
1BL0
2
MARA_ECOLI
A:
[63-124]
-----------------------------------------------------------------------------
R
K
M
T
E
I
-------
A
Q
K
L
-
K
--
E
S-
N
E
P
-
I
L
Y
L
-
A
E
R
Y
G
F
E
S
Q
Q
----
T
L
T
R
T
F
K
N
Y
F
D
V
P
P
H
K
Y
R
M
T
N
M
Q
G
E
S
R
F
L
H
P
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------