@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo1307: (2016-03-23 )
VHNPNLFNTLKQNEYTLPKDPNTSNEIIDTMLSYLSSTDSELRDNIAYNIFSEWLVVQDNLTTEQKMRIYNYAVNKNNLLFKINIIDSDAVFQRSFLALIIALLLENNKVHNFLTDSEIRETLNLLIELLKNEKNTHSFIEEKGWAHCIAHTADALDELIYQRTISEIDVKKIMTTIAFFYKTNTKMLTGEEDERLSNILITALFEQKISNEEVKNWLISISETIPSYLPEIPLINIKQFTQTLLIKLTVLNYDVDFSLFPIVTRYIRKNDDNSTNKKAL
Atome Classification :
(20 SA)
--------------------------------------------------------.........10..-..-....20-------------.........30.---...--....40.-----.......-----50.......----.60........70-......-..80.-.....-..90........--100.-...-------------.-----..110-------....-....----.120.......130-----.......140--------.......150---------.........160-..-.....170..--------.....180........190.-.--.....200.......210---------------.........220.......230...-...----.240....-----------...250-..---...-..260-------.........270.......280-------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------VHN
P
N
L
F
N
T
L
KQN-EY-TLPKD--------------PNT
S
N
E
I
I
D
T
M
L
---
S
Y
L
--SST
D
S
E
L
-----
R
D
N
I
A
Y
N
-----
I
F
S
E
W
L
V
VQ----DNLT
T
E
Q
K
M
R
I
Y
N
-
Y
A
VNKN-
N
L
L
F
K
-
I
N
I
ID-S
D
A
V
F
Q
R
S
F
L
A
L
--
I
I
A
L
-
L
LE-------------N-----NKV---------HNFL-
T
D
S
E
----
I
R
E
T
L
N
L
L
I
E
L
L
KN-----EK
N
T
H
S
F
I
E
E--------KG
W
A
H
C
I
A
-----------
H
T
A
D
A
L
D
E
L
I
Y
Q
-
R
T
-
I
S
E
I
D
V
K
K
I
M
--------
T
T
I
A
F
F
Y
-KTNT
K
M
LTGE
E
D
-
E
--
R
L
S
N
I
L
I
T
A
L
F
E
Q
KI
S
-----------------
N
E
E
V
K
N
W
L
I
S
I
S
E
T
I
P
S
YLPEIPLI-
N
I
K
----
Q
F
T
Q
T
L
L
I
-----------
K
L
T
V
L
N-YD---VDF-
S
L
F
---------
P
I
V
T
R
Y
I
RKNDDNSTNKKAL---------------------------------------------------------------------
72
Fugue
65.51
16%
-67
* C9 *
3FGA
1
2A5G_HUMAN
B:
[1-403]
PPAD
Q
E
K
L
F
I
Q
K
L
R
Q
C
C
V
L
F
D
FVSDPLSD
L
K
W
K
E
V
K
R
A
A
L
S
E
M
V
E
Y
I
T
HNRNVITE
P
I
Y
P
E
V
V
H
M
F
A
V
N
-
M
F
R
T
L
P
P
S
--------------
S
N
P
T
G
A
E
F
D
P
E
E
---
D
E
P
--
T
L
E
A
A
W
P
-----
H
L
Q
L
V
Y
E
-----
F
F
L
R
F
L
E
---------
S
P
D
F
Q
P
N
I
A
K
-
K
Y
I
D
Q
K
-
F
V
L
Q
L
-
L
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-
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D
P
R
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R
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F
L
K
T
--
T
L
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R
-
I
Y
G
K
F
LGL
R
A
Y
I
R
K
Q
I
N
-----
N
I
F
---------
Y
R
F
I
-
Y
E
T
E
HHNG
I
A
E
L
L
E
I
L
G
S
I
I
N
G
FALPL
K
E
E
H
K
I
F
L
L
K
VLLPLHKV
K
S
L
S
V
Y
H
P
-----------
Q
L
A
Y
C
V
V
Q
F
L
E
K
D
S
T
-
L
T
E
P
V
V
M
A
L
L
K
Y
WPKTH
S
P
K
E
V
M
F
L
-
N
E
L
E
E
I
L
D
V
I
E
P
-
S
--
E
F
V
K
I
M
E
P
L
F
R
Q
L
A
K
C
V
S
SPH
F
Q
V
A
E
R
A
L
Y
YWN
N
E
Y
I
M
S
L
I
S
D
N
A
A
K
I
L
P
I
M
F
P
S
L
Y
R
-
N
S
K
THWN
K
T
I
H
G
L
I
Y
-----------
N
A
L
K
L
F
-
M
E
---
M
N
Q
-
K
L
F
---------
D
D
C
T
Q
Q
F
K
A
E
K
L
K
E
K
L
K
M
K
E
R
E
E
A
W
V
K
IENL----------------------------------------------------------
74
Fugue
60.19
21%
-16
- C1 -
1AER
1
TOXA_PSEAE
A:
[1-211]
----------------------------------------------------AFLG
D
G
G
D
V
S
F
S
T
R
G
T
Q
-
N
W
-
T
V
E
R
L
--------------
L
Q
A
H
R
Q
L
E
E
R
G
Y
---
V
F
V
G
Y
H
G
T
F
L
E
A
-----
A
Q
S
I
V
F
G
GVRAA
I
W
R
G
F
Y
I
A
G
----
D
------
P
A
L
A
Y
G
-
Y
A
Q
D
Q
------------
E
-
P
D
A
R
-
G
R
I
R
N
G
A
--
L
L
R
V
-
Y
V
P
-------------
R
-----
S
S
L
---------
P
G
F
Y
-
R
T
S
L
----
T
L
A
A
----------------------------------------
P
-----------
E
A
A
G
E
V
E
R
L
I
G
H
-
P
L
-
P
L
R
L
D
--------------------------
A
I
T
G
P
E
E
-
E
GG
R
L
E
T
I
L
G
W
P
L
A
E
R
-------------------------------
T
V
V
I
P
S
A
I
P
T
D
P
-------------------------------
R
N
V
G
-
G
D
---
L
D
P
-
S
S
I
---------
P
D
K
E
Q
A
I
S
A
L
P
D
Y
A
S
Q
P
G
K
P
PR-------------------------------------------------------------------
73
Fugue
54.52
18%
-29
- C2 -
2WZP
-
?
R:
[1-375]
--------------------------------------------------------
M
L
E
A
N
V
Y
D
N
F
N
P
N
-
Y
Y
-
N
I
S
D
F
SMPNGKKEKRGLPI
P
K
A
R
C
Q
V
I
N
Y
E
L
WET
G
Y
L
--
Y
T
S
S
A
T
L
TVSVE
V
G
D
I
V
Q
I
-----
L
F
P
E
V
V
P
I
E
----
E
A
L
G
K
K
K
K
L
N
L
D
M
V
Y
L
V
T
D
V
-
D
E
--------
S
-
N
K
A
T
L
K
N
Y
F
W
A
M
--
I
------
E
-------------
S
-----
L
D
V
---------
P
N
A
I
-
T
K
T
T
----
N
F
A
I
I
D
Y
L
I
D
P
N
K
N
-----
N
L
M
S
Y
G
Y
F
-----------
F
N
S
S
I
F
A
-----------
G
K
A
T
I
N
R
K
--
A
E
-
T
S
-
S
A
H
D
V
A
K
R
I
F
--------
S
K
V
Q
F
Q
P
-
T
T
T
I
Q
H
A
P
S
E
T
D
-
P
--
R
---
N
L
L
F
I
N
F
A
S
R
N
W
-----------------
N
R
K
R
I
T
T
R
V
D
I
K
Q
S
V
T
M
D
T
E
T
I
V
E
R
-
S
A
Y
----
N
F
A
V
V
F
V
K
NKATDDYTDPP
K
M
Y
I
A
K
-
N
N
GDV
I
D
Y
-
S
T
Y
HGDGTDLPD
V
R
T
A
K
T
L
F
Y
D
R
D
D
H
G
N
P
P
E
L
STIKVEISPSTIVTRLIFNQNELLPLYVNDLVDIWYEGKLYSGYIADRVKTEFNDRLIFVESGDKPNVI
60
HHSearch
50.56
13%
-67
- C8 -
1QGR
-
IMB1_HUMAN
A:
[3-141]
---------------------------------------------------------------------------------------------------
L
I
T
I
L
---
E
K
T
--
V
S
P
D
R
L
E
-----
L
E
A
-
A
Q
K
-----
F
L
E
R
A
A
V
E
N
----
L
---
P
T
F
L
V
E
L
S
R
--------------
V
L
A
N
P
-
G
N
S
Q
V
A
R
V
A
A
G
L
--
Q
I
K
N
-
S
L
T
-------------
S
-----
K
D
P
D
I
K
A
Q
Y
Q
Q
R
W
L
A
I
-
D
A
N
A
----
R
R
E
V
K
N
Y
V
L
H
T
L
G
T
-----
E
T
Y
R
P
-------------
S
S
------------------
A
S
Q
C
V
A
G
I
A
C
A
-
E
--
I
P
V
N
Q
W
P
E
L
I
--------
P
Q
L
V
A
N
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
70
Fugue
50.36
14%
-41
- C9 -
4DVG
-
?
B:
[8-312]
--------------------------------------------------------
E
V
V
Q
Q
K
F
A
I
V
A
K
E
M
K
I
-
D
N
P
E
L
--------------
I
T
-----
I
P
N
Q
W
---
K
L
V
--
Q
E
Y
E
K
K
Q
-----
K
K
D
I
R
I
Q
-----
L
N
A
Q
K
T
G
N
W
----
R
N
A
I
T
D
P
K
Y
L
A
D
L
-
L
K
T
R
D
D
M
D
L
L
N
E
M
V
V
V
F
R
S
S
S
V
S
F
I
K
T
F
V
S
V
G
G
L
A
N
L
M
A
I
Y
-------------
K
-----
K
K
I
E
AE------
N
S
N
T
-
A
I
D
E
----
E
R
K
C
C
E
V
L
R
Y
V
F
A
E
-----
E
D
A
T
V
A
L
I
E
I
--------
D
G
G
V
E
L
L
L
K
G
M
N
SKRIT
P
D
N
Q
L
D
I
L
L
E
I
T
L
T
-
S
S
M
V
E
H
P
S
Q
E
G
L
Y
--------
L
G
G
D
V
C
V
M
N
A
F
S
N
L
V
S
E
G
V
D
M
K
--
K
F
--
L
S
F
F
S
L
F
S
K
S
K
S
-----------------
E
K
F
K
H
A
S
L
V
L
I
N
N
L
I
D
Q
--
P
E
L
E
H
R
M
D
V
R
----
N
S
F
I
E
I
G
L
-----------
V
N
E
L
E
N
M
K
N
---
T
E
W
M
K
I
D
---------
K
I
K
D
S
I
N
D
F
F
D
S
W
E
E
D
K
K
E
V
E
S
R
F
D
D
L--------------------------------------------------------------
69
Fugue
48.11
23%
-66
- C6 -
2FOK
-
T2F1_PLAOK
A:
[287-386]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
P
K
R
-
V
Y
W
E
M
-
L
A
T
N
L
-
T
D
K
E
Y
V
R
T
R
R
A
L
--
I
L
E
I
-
L
I
K
-------------
A
G
S
L
K
I
E
Q
I
---------
Q
D
N
L
-
K
K
L
G
----
F
D
E
V
I
E
T
I
E
N
D
I
K
G
-----
L
I
N
T
G
I
F
I
E
I
--------
K
G
R
F
Y
Q
L
K
-----------
D
--
H
I
L
Q
F
V
I
P
N
-
R
L
-
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
76
Fugue
47.49
9%
-46
- C9 -
2DB0
-
?
A:
[9-247]
----------------------------------------------------------
D
I
R
E
A
L
A
N
G
E
H
-
L
E
-
K
I
L
I
M
--------------
A
K
Y
D
E
S
V
L
K
K
L
I
---
E
L
L
--
D
D
D
L
W
T
V
-----
V
K
N
-
A
I
S
-----
I
I
M
V
I
A
K
T
R
----
E
D
L
Y
E
P
M
L
K
K
L
F
S
-
L
L
K
K
-------------
S
-
E
A
I
P
L
T
Q
E
I
A
K
A
--
F
G
Q
M
-
A
K
E
-------------
K
-----------------------
P
E
L
----
V
K
S
M
I
P
V
L
F
A
N
Y
R
I
-----
G
D
-------------------
E
K
T
K
I
-----------
N
V
S
Y
A
L
E
E
I
A
K
A
-----
N
P
M
L
M
A
S
I
V
--------
R
D
F
M
S
M
--------
L
S
S
K
N
R
-
E
--
D
K
L
T
A
L
N
F
I
E
A
M
G
E
N
S
-----------------
F
K
Y
V
N
P
F
L
P
R
I
I
N
L
L
H
D
-----
G
D
E
-
I
V
R
----
A
S
A
V
E
A
L
V
-----------
H
L
A
T
L
N
-
D
K
---
L
R
K
-
V
V
I
---------
K
R
L
E
E
L
N
D
T
S
S
L
V
N
K
T
V
K
E
G
I
S
R
L
L
L
L--------------------------------------------------------------
57
HHSearch
47.45
16%
-56
- C8 -
1IBR
-
IMB1_HUMAN
B:
[3-106]
---------------------------------------------------------------------------------------------------
L
I
T
I
L
---
E
K
T
--
V
S
P
D
R
L
E
-----
L
E
A
-
A
Q
K
-----
F
L
E
R
A
A
V
E
N
----
L
---
P
T
F
L
V
E
L
S
R
-
V
L
------------
A
-
N
P
-
G
N
S
Q
V
A
R
V
A
A
G
L
--
Q
I
K
N
-
S
L
T
-------------
S
-----
K
D
P
D
I
K
A
Q
Y
Q
Q
R
W
L
A
I
-
D
A
N
A
----
R
R
E
V
K
N
Y
V
L
Q
T
L
G
T
-----
E
T
Y
R
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
63
HHSearch
42.89
17%
-41
- C5 -
1LDD
-
APC2_YEAST
A:
[780-835]
----------------------------------------------------------------------------------------------
R
S
L
P
F
I
E
G
M
L
---
T
N
L
--
G
A
M
K
L
H
---------
K
I
H
S
-----
F
L
K
I
T
V
P
K
D
WGYN
R
-
I
T
L
Q
Q
L
E
G
Y
L
N
-
T
L
A
D
E
G
-
R
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
68
Fugue
39.87
19%
-46
- C8 -
1VF6
-
MPP5_MOUSE
C:
[120-170]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
D
P
D
--
V
E
D
L
-
F
S
S
-------------
L
-----
K
H
I
---------
Q
H
T
L
-
V
D
S
Q
----
S
Q
E
D
I
S
L
L
L
Q
L
V
Q
N
-----
R
D
F
Q
N
A
F
K
I
H
--------
N
A
V
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
39.66
26%
-25
- C10 -
3KUL
4
EPHA8_HUMAN
A:
[111-181]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
I
I
R
-
L
E
G
V
V
T
R
G
R
L
A
M
--
I
V
T
E
-
Y
M
E
-------------
N
-----
G
S
L
---------
D
T
F
L
-
R
T
H
D
----
G
Q
F
T
I
M
Q
L
V
G
M
L
R
G
-----
V
G
A
G
M
R
Y
L
S
D
--------
L
G
Y
V
H
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
48
PsiBlast_CBE
39.62
34%
3
- C10 -
2OFV
1
?
B:
[89-156]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
I
T
E
-
Y
M
E
-------------
N
-----
G
S
L
---------
V
D
F
L
K
T
P
S
G
----
I
K
L
T
I
N
K
L
L
D
M
A
A
Q
-----
I
A
E
G
M
A
F
I
E
E
--------
R
N
Y
I
H
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
65
HHSearch
38.96
26%
-34
- C8 -
1WSA
-
ASPG_WOLSU
A:
[61-103]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
E
M
-
T
G
K
V
----
W
L
K
L
A
K
R
V
N
E
L
L
A
------
Q
K
E
T
E
A
V
I
----------------
I
T
-----------
H
G
T
D
T
M
E
E
T
A
F
F
-
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
66
HHSearch
38.73
21%
-16
* C8 *
2WLT
1
ASPG_HELPJ
A:
[62-104]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
Q
D
M
-
N
E
E
I
----
W
F
K
L
A
Q
R
A
Q
E
L
L
D
------
D
S
R
I
Q
G
V
V
----------------
I
T
-----------
H
G
T
D
T
L
E
E
S
A
Y
F
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
38.11
23%
-38
- C10 -
3FY2
-
A:
[105-181]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
I
I
R
-
L
E
G
V
V
T
K
S
K
P
V
M
--
I
V
T
E
-
Y
M
E
-------------
N
-----
G
S
L
---------
D
S
F
L
-
R
K
H
D
----
A
Q
F
T
V
I
Q
L
V
G
M
L
R
G
-----
I
A
S
G
M
K
Y
L
S
D
--------
M
G
Y
V
H
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
38.08
23%
-36
- C10 -
3FXX
1
A:
[105-179]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
I
I
R
-
L
E
G
V
V
T
K
S
K
P
V
M
--
I
V
T
E
-
Y
M
E
-------------
N
-----
G
S
L
---------
D
S
F
L
-
R
K
H
D
----
A
Q
F
T
V
I
Q
L
V
G
M
L
R
G
-----
I
A
S
G
M
K
Y
L
S
D
--------
M
G
Y
V
H
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
37.96
23%
-40
- C10 -
4GK4
1
A:
[95-178]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
I
I
R
-
L
E
G
V
V
T
K
S
K
P
V
M
--
I
V
T
E
-
Y
M
E
-------------
N
-----
G
S
L
---------
D
S
F
L
-
R
K
H
D
----
A
Q
F
T
V
I
Q
L
V
G
M
L
R
G
-----
I
A
S
G
M
K
Y
L
S
D
--------
M
G
Y
V
H
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
37.79
23%
-33
- C10 -
4GK3
1
A:
[95-178]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
I
I
R
-
L
E
G
V
V
T
K
S
K
P
V
M
--
I
V
T
E
-
Y
M
E
-------------
N
-----
G
S
L
---------
D
S
F
L
-
R
K
H
D
----
A
Q
F
T
V
I
Q
L
V
G
M
L
R
G
-----
I
A
S
G
M
K
Y
L
S
D
--------
M
G
Y
V
H
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
37.62
23%
-36
- C10 -
2QOC
1
A:
[78-152]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
I
I
R
-
L
E
G
V
V
T
K
S
K
P
V
M
--
I
V
T
E
-
Y
M
E
-------------
N
-----
G
S
L
---------
D
S
F
L
-
R
K
H
D
----
A
Q
F
T
V
I
Q
L
V
G
M
L
R
G
-----
I
A
S
G
M
K
Y
L
S
D
--------
M
G
Y
V
H
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
37.62
23%
-41
- C10 -
4P5Q
1
A:
[95-179]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
I
I
R
-
L
E
G
V
V
T
K
S
K
P
V
M
--
I
V
T
E
-
Y
M
E
-------------
N
-----
G
S
L
---------
D
S
F
L
-
R
K
H
D
----
A
Q
F
T
V
I
Q
L
V
G
M
L
R
G
-----
I
A
S
G
M
K
Y
L
S
D
--------
M
G
Y
V
H
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------