@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo1362: (2016-03-23 )
VATKKKTFEEAIAELETIVEALENGSASLEDSLDMYQKGIELTKLCQDKLQSAEKRMAKVVTDAGEEIPFEADGE
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10-----.--.......20.-..----.---.-...30..------......40------........50.......------.60.....-...70....------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VAT
K
K
K
T
F
E
E
A
-----
I
--
A
E
L
E
T
I
V
E
A
L
-EN----G---S-A
S
L
E
D
S
L
------
D
M
Y
Q
KG
I
E
------
L
T
K
L
C
Q
D
K
L
Q
S
A
E
K
R
M
A
------
K
V
V
TDAGE-EIPFEADGE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
69.83
14%
-52
- C1 -
1H7C
2
TBCA_HUMAN
A:
[23-84]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
V
M
Y
E
K
E
-----
A
--
K
Q
Q
E
E
K
I
E
K
M
-
R
A
E
DG-
E
---
N
-
Y
D
I
K
K
Q
A
------
E
I
L
Q
E
S
R
M
------
M
I
P
D
C
Q
R
R
L
E
A
A
Y
L
D
L
Q
------
R
I
L
E
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
63.31
25%
-37
- C1 -
3EDV
5
SPTB2_HUMAN
A:
[2-323]
--------------------------------------------------------------------------------------------------------------------------------------------S
H
M
R
H
R
L
F
Q
L
N
R
E
V
D
D
L
E
Q
W
I
A
E
R
E
V
V
A
G
SHELGQD
Y
E
H
V
T
M
L
Q
E
R
F
R
E
F
A
R
D
T
G
N
I
G
Q
E
R
V
D
T
V
N
H
L
A
D
E
L
I
N
S
GHSD
A
A
T
I
A
E
W
K
D
G
L
N
E
A
W
A
D
L
L
E
L
I
D
T
R
T
Q
I
L
A
A
S
Y
E
L
H
K
F
Y
H
D
A
K
E
I
F
G
R
I
Q
D
K
H
K
K
LPEELGRD
Q
N
T
V
E
T
L
Q
R
M
H
T
T
F
E
H
D
-----
I
--
Q
A
L
G
T
Q
V
R
Q
L
-
Q
E
----
D
---
A
-
A
R
L
Q
A
A
Y
AG
D
K
A
D
D
I
Q
K
R
E
N
E
------
V
L
E
A
W
K
S
L
L
D
A
C
E
S
R
R
V
------
R
L
V
-
D
T
G
D
-
K
F
R
F
F
S
M
V
R
D
L
M
L
W
M
E
D
V
I
R
Q
I
E
A
QEKPRD
V
S
S
V
E
L
L
M
N
N
H
Q
G
I
K
A
E
I
D
A
R
N
D
S
F
T
T
C
I
E
L
G
K
S
L
L
A
R
KHYA
S
E
E
I
K
E
K
L
L
Q
L
T
E
K
R
K
E
M
I
D
K
W
E
D
R
W
E
W
L
R
L--------------------------------------------------------------------------------------------------------------------
26
Fugue
62.49
38%
13
- C1 -
1VP7
-
EX7S_BORPA
A:
[13-80]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
R
P
L
P
Q
D
F
E
T
A
-----
L
--
A
E
L
E
S
L
V
S
-
A
M
E
N
----
G
---
T
-
L
P
L
E
Q
S
L
------
S
A
Y
R
R
G
V
E
------
L
A
R
V
C
Q
D
R
L
A
Q
A
E
Q
Q
V
K
------
V
L
E
G
D
L
L
R
-
P
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
59.59
13%
-20
- C1 -
2LW1
-
UUP_ECOLI
A:
[551-635]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KAETVKRS
S
S
K
L
S
Y
K
L
Q
R
E
-----
L
--
E
Q
L
P
Q
L
L
E
D
L
-
E
A
----
K
---
L
-
E
A
L
Q
T
Q
V
A
DA---
S
F
F
S
Q
P
H
E
------
Q
T
Q
K
V
L
A
D
M
A
A
A
E
Q
E
L
E
------
Q
A
F
E
R
W
E
Y
-
L
E
A
L
K
N
G
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
58.83
52%
6
- C1 -
1VP7
-
EX7S_BORPA
A:
[20-69]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
E
T
A
-----
L
--
A
E
L
E
S
L
V
S
A
M
-
E
N
----
G
---
T
-
L
P
L
E
Q
S
L
------
S
A
Y
R
R
G
V
E
------
L
A
R
V
C
Q
D
R
L
A
Q
A
E
Q
Q
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
56.99
44%
26
- C1 -
1VP7
-
EX7S_BORPA
A:
[14-75]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
P
L
P
Q
D
F
E
T
A
-----
L
--
A
E
L
E
S
L
V
S
A
M
-
E
N
----
G
---
T
-
L
P
L
E
Q
S
L
------
S
A
Y
R
R
G
V
E
------
L
A
R
V
C
Q
D
R
L
A
Q
A
E
Q
Q
V
K
------
V
L
E
G
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
54.86
17%
-16
- C1 -
3D8L
-
?
A:
[1-91]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAK
Q
L
S
T
A
R
K
F
K
M
I
TGKD
L
F
--
Q
Q
Q
K
A
M
D
T
E
L
-
K
K
----
E
---
D
-
G
E
I
T
D
L
M
------
E
F
V
Q
Y
G
L
Y
------
L
A
L
F
-
Q
D
N
I
V
K
A
K
S
D
F
S
------
D
F
R
S
S
-----
F
E
F
D
T
D
G
K
G
L
K
E
L
V
E
L
W
Q
K
E
I-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
54.30
23%
-49
- C1 -
1X9B
-
?
A:
[16-47]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
S
K
S
V
F
V
R
N
-----
L
--
N
E
L
E
A
L
A
V
R
L
-
G
K
----
S
Y
--
R
-
I
Q
L
D
Q
A
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
54.26
10%
-63
- C1 -
1QSD
-
TBCA_YEAST
A:
[21-82]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
Y
Y
Q
Q
E
-----
L
--
K
D
Q
E
A
H
V
A
K
L
-
K
E
DKSV
D
---
P
-
Y
D
L
K
K
Q
E
------
E
V
L
D
D
T
K
R
------
L
L
P
T
L
Y
E
K
I
R
E
F
K
E
D
L
E
------
Q
F
L
K
T
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
48.62
10%
-61
- C1 -
3MXZ
2
TBCA_ARATH
A:
[25-86]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
S
Y
E
K
E
-----
V
--
E
R
E
A
A
K
T
A
D
M
-
K
D
K
GA-
D
---
P
-
Y
D
L
K
Q
Q
E
------
N
V
L
G
E
S
R
M
------
M
I
P
D
C
H
K
R
L
E
S
A
L
A
D
L
K
------
S
T
L
A
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
44.43
12%
-42
- C1 -
4U0R
-
?
A:
[160-504]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S
I
D
I
L
Q
EKEG
H
L
D
F
V
I
I
P
H
Y
T
F
L
D
Y
Y
K
H
L
S
Y
N
S
I
Y
HKSSTYGK
Y
I
A
V
D
A
F
I
K
K
I
N
E
A
Y
D
K
V
K
S
K
C
N
D
I
-----
K
--
N
D
L
I
A
T
I
K
K
L
-
E
H
-------------
P
Y
F
K
------
K
M
M
D
E
Y
N
T
------
K
K
K
K
L
I
K
C
I
K
N
H
E
N
D
F
N
------
K
I
C
M
D
M
K
N
-
Y
G
T
N
L
F
E
Q
L
SCYNNNFCNT
N
G
I
R
Y
H
Y
D
E
YI
H
K
L
I
L
S
V
K
S
K
N
L
N
K
D
L
S
D
M
T
N
I
L
Q
Q
S
E
L
L
L
T
N
L
N
K
K
M
GS
Y
I
Y
I
D
T
I
K
F
I
H
K
E
M
K
H
I
F
N
R
I
E
Y
H
T
K
I
I
N
D
K
T
K
I
I
Q
D
K
I
K
L
N
IW
R
T
F
Q
K
D
E
L
L
K
R
I
L
D
M
S
N
E
Y
S
L
F
I
T
S
D
H
L
R
Q
M
L
Y
N
T
F
Y
S
K
E
K
H
L
N
N
I
F
H
H
L
I
Y
V
LQMK-------------------------------------------------
13
HHSearch
44.33
12%
-75
- C1 -
1PGY
-
A:
[10-43]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
I
A
R
L
-
M
S
----
L
---
G
-
L
S
I
E
E
A
T
------
E
F
Y
E
N
D
V
-------
T
Y
E
R
Y
--
L
E
I
L
K
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
43.09
46%
-34
- C1 -
3HE4
-
?
A:
[18-45]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
L
E
N
I
V
A
R
L
-
E
N
----
D
---
N
-
A
N
L
E
K
D
I
------
A
N
L
E
K
D
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
42.60
12%
-17
- C1 -
3U0C
-
IPAB_SHIFL
A:
[114-171]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
K
N
L
E
F
-----
S
--
D
K
I
N
T
L
L
S
E
T
-
E
G
----
L
---
T
-
R
D
Y
E
K
Q
I
------
N
K
L
K
N
A
D
S
------
K
I
K
D
L
E
N
K
I
N
Q
I
Q
T
R
L
S
------
E
L
D
P
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
41.35
6%
-36
- C1 -
2J9W
-
?
A:
[120-220]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HH
M
G
N
L
N
R
C
I
A
D
I
-----
V
--
S
L
F
I
T
V
M
D
K
L
-
R
L
----
E
IRA
M
-
D
E
I
Q
P
D
L
------
R
E
L
M
E
T
M
N
R
MSHLP
P
D
F
E
G
R
E
K
V
S
Q
W
L
Q
K
L
S
S
MSAS
D
E
L
D
D
S
Q
V
R
-
Q
M
L
F
D
L
E
S
A
Y
N
A
F
N
R
F
L
H---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
41.34
20%
-22
- C1 -
4R12
6
?
A:
[15-587]
YTTLYSSYPC
T
K
I
M
T
SD
G
Q
F
G
C
S
S
K
HG
G
N
S
G
I
LYLIDD
D
E
S
Y
N
N
Y
F
S
YSQQK
D
I
I
V
V
L
DTNYFN
S
T
S
V
L
N
LHNKSKIE
G
I
I
V
L
TDTKKT
Y
P
Y
S
PDSRYPNKIYGLYPNSNLEWNPNADGFTYFSFP
F
P
I
F
A
I
D
N
Q
T
S
V
A
I
R
N
V
S
K
H
N
RDGQYP
A
W
G
A
E
L
D
S
F
M
QGAIN
S
E
T
C
L
R
R
GFCEPV
G
G
Q
S
I
W
S
S
FSSKIDKE
K
E
I
I
L
V
MLPF
D
T
T
A
FFRDLSIGADQS
S
F
A
T
V
T
L
L
S
V
I
K
S
L
A
A
VDRSSWN
K
E
V
V
F
A
F
W
N
AERWGY
V
G
S
E
Y
F
I
N
D
L
L
N
F
Q
C
KTYNSDKSKCID
P
P
R
A
D
L
A
F
Q
T
Q
-----
I
NF
T
K
I
S
T
I
I
E
L
N
-
Q
I
----
G
---
R
-
A
Q
L
D
K
N
L
------
G
K
Y
S
L
Y
L
H
------
T
A
G
T
---
K
T
S
S
V
T
D
I
L
D
------
Q
V
A
S
S
Y
E
N
S
T
I
T
F
K
P
T
T
Q
TELPPS
S
S
M
S
F
L
K
K
TNK
I
P
V
V
V
I
T
DHDYKYSNPYYGYEQDDNENVLGST
L
N
D
I
V
Y
I
L
S
T
F
I
D
R
I
A
GGNNNITID
K
N
F
I
N
I
L
Y
P
C
F
T
SSITCFNILMKTYPLNEVPNFYSSVFGTSLT
T
T
L
S
P
Y
E
T
K
L
I
H
R
L
L
Y
S
I
T
QY
N
S
T
L
TNCTSDNDCPS
S
L
C
Y
SGQCVSSN
T
H
L
H
N
A
L
S
LG
F
D
F
D
TSKN
V
W
K
I
VNSS
Y
P
I
F
T
E
S
N
W
D
Y
T
A
L
K
V
F
K
I
18
HHSearch
41.11
25%
-23
- C1 -
2V6Y
-
?
A:
[6-45]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
E
D
M
A
-----
R
--
K
Y
A
I
L
A
V
K
A
D
-
K
E
----
G
------
K
V
E
D
A
I
------
T
Y
Y
K
K
A
I
E
------
V
L
S
Q
I
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
40.62
19%
-27
- C1 -
3EAB
-
SPAST_HUMAN
A:
[119-161]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
H
K
Q
A
-----
F
--
E
Y
I
S
I
A
L
R
I
D
-
E
D
----
E
---
K
A
G
Q
K
E
Q
A
V
------
E
W
Y
K
K
G
I
E
------
E
L
E
K
G
I
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
39.53
34%
-11
* C1 *
1COI
3
?
A:
[1-29]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
V
E
A
L
E
K
K
-----
V
--
A
A
L
E
S
K
V
Q
A
L
-
E
K
----
K
---
V
-
E
A
L
E
H
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
37.66
19%
-16
- C1 -
2DL1
-
SPG20_HUMAN
A:
[18-54]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
Y
K
K
A
-----
F
--
L
F
V
N
K
G
L
N
T
D
-
E
L
----
G
------
Q
K
E
E
A
K
------
N
Y
Y
K
Q
G
I
G
------
H
L
L
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------