@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo1382: (2016-03-24 )
MTKWNVYLTKGEYEPWWFFEEWETSIQEDFSFSDKEAAFLKYQELAEALLSNYPKHQTKKDCLLAAWNEEEVEYCEDCEDDIQTFHGLILFFEGEVYQPTPEEKETIFKRVLTFA
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------.......------..10....---....20--........-------30........40---.--------.------......--50----------.....---------------....60..--------------...-----.----..70........80--------------..-...------..--------------..90----......----..-.100........110...------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------MTK
W
N
V
Y
------
L
TKGEYEP---
W
W
F
F
E
E
--
W
E
T
S
I
Q
ED-------FSFSD
K
E
A
A
F
L
K
---
Y
--------
Q
------
E
L
A
E
A
L
--
L
-----------SNYPK---------------HQTKKD
C
L
--------------
L
AA-----W----
N
E
E
E
V
E
Y
C
E
D
C
E
D
---------------
D
I
-
Q
T
F
------
H
G
--------------
L
I
L
-----
F
F
EGEV----YQ-PT-
P
E
E
K
E
T
I
F
K
R
V
LTFA------------------------------------------------------------------------------------------------------------------------------------------------
48
Fugue
82.63
16%
-32
* C2 *
2EIA
-
GAG_EIAVY
A:
[17-146]
--------------------------------------------------------------------------------------------------------------
P
---
R
G
-
Y
T
T
--
W
V
N
T
I
Q
T
N
-------
G
L
L
N
E
A
S
Q
N
L
F
G
---
I
--------
L
S
VDCT
S
E
E
M
N
A
F
--
L
-----------
D
V
V
P
G
---------------
Q
A
G
Q
K
Q
I
L
--------------
L
D
A
-----
I
----
D
K
I
A
D
D
W
D
N
R
H
P
L
PNAPLVAPPQGPIPM
T
A
-
R
F
I
------
R
G
--------------
L
G
V
-----
P
R
E
R
Q
M
----
E
P
---A
F
D
Q
F
R
Q
T
Y
R
Q
W
I
I
E
A
M
S
E
G
I
K
V
M
IG--------------------------------------------------------------------------------------------------------------------------------------
43
Fugue
66.47
12%
-59
- C2 -
2B18
1
CODY_BACSU
A:
[10-164]
------------------------------------------------------------------------------------MA
L
L
Q
K
T
R
I
I
N
S
M
------
L
Q
A
A
A
G
K
P
VN
F
K
E
M
A
E
T
--
L
R
D
V
I
D
S
N
-------
I
F
V
V
S
R
R
G
K
L
L
G
---
Y
S
I
NQQIEN
D
------
R
M
K
K
M
L
--
E
-----------
D
R
Q
F
P
---------------
E
E
Y
T
K
N
L
F
NVPETSSNLDINSE
Y
T
A
-----
F
----
P
V
E
N
R
D
L
F
Q
A
G
L
T
---------------
T
I
-
V
P
I
I
G
GGER
L
G
--------------
T
L
I
-----
L
S
R
L
Q
------
D
-
Q
F
-
N
D
D
D
L
I
L
A
E
Y
G
A
T
V
V
G
M
E
I
L-------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
64.61
23%
26
- C3 -
2I53
2
CCNK_HUMAN
A:
[47-138]
-----------------------------------------------------------------------------------------------------------------------------------------
F
I
F
D
V
G
T
R
L
G
L
H
---
Y
--------
D
------
T
L
A
T
G
I
--
I
Y
F
H
R
F
Y
M
F
H
SF
K
Q
F
P
R
---------------
Y
V
T
G
A
C
C
L
--------------
F
L
A
-----
G
----
K
V
E
E
T
P
--
K
K
C
K
D
---------------
I
I
-
K
T
A
------
R
S
--------------
L
L
N
-----
D
V
Q
F
G
Q
----
F
G
-
D
D
-
P
K
E
E
V
M
V
L
E
R
I
L
---------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
63.18
31%
-81
- C3 -
1VFF
-
?
A:
[49-100]
---------------------------------------------------------------------------------------------
W
E
L
Y
R
D
D
I
Q
L
M
T
S
L
G
Y
N
A
---
Y
R
F
S
I
E
--
W
S
R
L
F
P
E
E
-------
N
K
F
N
--
E
D
A
F
M
K
---
Y
--------
R
------
E
I
I
D
L
L
--
L
-----------
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
45
Fugue
62.75
16%
-31
- C2 -
1DDB
-
BID_MOUSE
A:
[1-195]
-------------------------------M
D
S
E
V
S
N
G
S
G
L
G
AK
H
I
T
D
L
L
V
F
G
F
L
Q
S
SGCT
R
Q
E
L
E
V
L
G
RELPV
Q
A
Y
W
E
A
D
L
E
D
E
L
Q
T
D
G
S
Q
A
S
R
S
------
F
N
Q
G
R
I
E
P
---
D
S
E
S
Q
E
E
I
I
H
N
I
A
R
H
L
-------
A
Q
I
G
D
E
M
D
H
N
I
Q
PTL
V
--------
R
------
Q
L
A
A
Q
F
--
M
-----------
N
G
S
L
S
---------------
E
E
D
K
R
N
C
L
--------------
A
K
A
-----
L
----
D
E
V
K
T
A
F
P
R
D
M
E
N
---------------
D
--
K
A
M
------
L
I
--------------
M
T
M
-----
L
L
A
K
K
V
----
A
S
-
H
A
-
P
S
L
L
R
D
V
F
H
T
T
V
N
F
I
N
Q
N
LFS
Y
V
R
N
L
V
R
N
E
MD-------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
62.71
30%
-5
- C3 -
3LJU
-
ADAP1_HUMAN
X:
[66-121]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
I
P
Q
---------------
V
S
K
V
K
S
V
R
--------------
L
D
A
-----
W
----
E
E
A
Q
V
E
F
M
A
S
H
G
N
---------------
D
A
-
A
R
A
------
R
------------------------
F
E
S
K
V
PSFY
Y
R
-
P
T
-
P
S
D
------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
62.58
30%
-1
- C3 -
3MDB
-
ADAP1_HUMAN
C:
[68-136]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
I
P
Q
---------------
V
S
K
V
K
S
V
R
--------------
L
D
A
-----
W
----
E
E
A
Q
V
E
F
M
A
S
H
G
N
---------------
D
A
-
A
R
A
------
R
------------------------
F
E
S
K
V
PSF
Y
Y
R
-
P
T
-
P
S
D
------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
62.56
30%
-1
- C3 -
3FEH
1
ADAP1_HUMAN
A:
[66-122]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
I
P
Q
---------------
V
S
K
V
K
S
V
R
--------------
L
D
A
-----
W
----
E
E
A
Q
V
E
F
M
A
S
H
G
N
---------------
D
A
-
A
R
A
------
R
------------------------
F
E
S
K
V
PSF
Y
Y
R
-
P
T
-
P
S
D
------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
62.25
23%
25
- C3 -
4NST
-
CCNK_HUMAN
B:
[57-148]
-----------------------------------------------------------------------------------------------------------------------------------------
F
I
F
D
V
G
T
R
L
G
L
H
---
Y
--------
D
------
T
L
A
T
G
I
--
I
Y
F
H
R
F
Y
M
F
H
SF
K
Q
F
P
R
---------------
Y
V
T
G
A
C
C
L
--------------
F
L
A
-----
G
----
K
V
E
E
T
P
--
K
K
C
K
D
---------------
I
I
-
K
T
A
------
R
S
--------------
L
L
N
-----
D
V
Q
F
G
Q
----
F
G
-
D
D
-
P
K
E
E
V
M
V
L
E
R
I
L
---------------------------------------------------------------------------------------------------------------------------------------------------
47
Fugue
62.10
16%
-42
- C5 -
4ONQ
1
?
A:
[7-353]
RLPKPMIGFGVPTEPLPAMV
R
R
T
L
PSQAVGPP
F
F
Y
Y
E
N
VALAP
K
G
V
W
D
T
I
S
S
S
L
YD
I
E
P
E
F
V
D
SKYFCA
A
A
R
K
R
G
Y
I
H
NLPVENRFPLFP
L
A
P
R
T
I
H
------
E
A
L
P
L
S
K
K
---
W
W
P
S
W
D
--
P
R
T
K
L
N
----------
C
L
Q
T
A
I
G
S
A
Q
L
---
T
--------
N
------
R
I
R
K
A
V
ED
F
-----------
D
G
E
P
P
---------------
M
R
V
Q
K
F
V
L
D
Q
------------
C
R
K
-----
W
----
N
-------------------------------------------------------
L
V
W
-----
V
G
R
N
K
V
----
A
P
-
L
E
-
P
D
E
V
E
M
L
L
G
----
F
P
KNHTRGGGIS
R
T
D
R
Y
K
S
L
G
N
SFQ
V
D
T
V
A
Y
H
L
SVLKDLFPG
G
I
N
V
LSLFSGIG
G
G
E
V
A
L
Y
R
L
GIPLN
T
V
V
S
V
E
KS
E
V
N
R
D
I
V
R
S
W
W
E
Q
T
NQR
G
N
L
I
H
F
NDVQQLN
G
D
R
L
E
Q
L
I
E
S
FGGFD
L
V
I
G
G
SPS
L
F
S
S
Y
V
R
I
L
D
L
V
K
S
I
M
S
15
PsiBlast_PDB
61.84
30%
12
- C3 -
3FM8
2
ADAP1_HUMAN
C:
[68-137]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
I
P
Q
---------------
V
S
K
V
K
S
V
R
--------------
L
D
A
-----
W
----
E
E
A
Q
V
E
F
M
A
S
H
G
N
---------------
D
A
-
A
R
A
------
R
------------------------
F
E
S
K
V
PSF
Y
Y
R
-
P
T
-
P
S
D
------------------------------------------------------------------------------------------------------------------------------------------------------------
42
Fugue
59.49
14%
-48
- C4 -
1V74
1
A:
[1-107]
---------------------------------------------------------------------------------------------
L
N
D
P
------
L
D
S
G
R
F
S
R
---
K
Q
L
D
K
K
--
Y
K
H
A
--
G
D
-------
F
G
I
S
D
T
K
K
N
R
E
T
---
L
--------
T
------
K
F
R
D
A
I
--
E
-----------
E
H
L
S
D
---------------
K
D
T
V
E
K
G
T
--------------
Y
R
R
-----
E
----
K
G
S
K
V
Y
F
N
P
N
----------------------
T
M
------
N
V
--------------
V
I
I
K
SNGE
F
L
S
G
W
K
----
I
N
-
P
D
-
A
D
N
G
R
I
Y
L
E
T
G
E
L
--------------------------------------------------------------------------------------------------------------------------------------------------
46
Fugue
59.20
9%
-31
- C2 -
2O73
1
URAD_DANRE
A:
[2-166]
-----------------------------------------------------------------------------D
I
N
V
V
N
A
LA
Y
E
D
F
V
K
L
F
G
N
V
------
V
E
K
C
P
L
I
S
---
A
A
I
W
S
Y
--
R
P
F
K
D
L
A
D
-------
I
E
A
R
I
S
E
F
I
H
S
L
---
P
--------
D
------
S
G
K
E
G
I
--
L
-----------
R
C
H
P
D
LAG
R
D
L
Q
S
GTLT
P
E
S
Q
E
E
Q
S
Q
A
G
--------------
M
T
T
-----
L
----
D
S
A
E
I
V
H
M
Y
R
L
N
S
---------------
E
Y
-
K
E
R
------
F
G
FPFVICARLNN
K
A
D
I
V
R
-----
Q
L
S
E
R
L
----
K
N
-
R
R
-
T
A
E
L
E
C
A
I
E
E
V
K
K
I
C
S
L
R
L
H
S
I
V----------------------------------------------------------------------------------------------------------------------------------------
40
Fugue
58.36
23%
-26
- C5 -
2FOK
-
T2F1_PLAOK
A:
[287-386]
-------------------------------------------------------------------------------------------
V
P
K
R
V
Y
--------------------
W
E
M
--
L
A
T
N
L
-------------
T
D
K
E
Y
V
R
T
R
---
R
--------
A
------
L
I
L
E
I
L
--
I
-----------
K
A
G
S
L
---------------
K
I
E
Q
I
Q
D
N
--------------
L
K
K
-----
L
----
G
F
D
E
V
--
I
E
T
I
E
N
---------------
D
I
-
K
G
L
I
N
----
T
G
--------------
I
F
I
-----
E
I
K
G
R
F
----
Y
Q
L
K
D
-
H
I
L
Q
F
V
I
P
N
R
L
V
---------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
54.75
30%
-49
* C6 *
4UF0
3
UTY_HUMAN
A:
[360-418]
--------------------------------------------------------------------------------------------------------------------------------------------------------
F
--------
E
------
M
I
K
Y
C
L
--
L
-----------
K
I
L
K
Q
---------------
Y
Q
T
L
R
E
A
L
--------------
V
A
A
G
K
E
V
I
W
H
G
R
T
N
E
E
P
A
H
Y
C
S
I
C
E
-----------------
V
-
E
V
F
------
N
----------------
L
L
-----
F
V
T
N
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
53.76
26%
31
- C3 -
2TS1
-
SYY_GEOSE
A:
[239-319]
-----------------------------------------------------------------------------------------------
I
W
------
L
D
K
E
K
T
S
P
---
Y
E
F
Y
Q
F
--
W
I
N
T
D
D
R
D
V
I
R
Y
L
K
Y
F
T
F
L
S
K
E
E
I
E
A
L
---
E
--------
Q
------
E
L
R
E
A
------------------
P
E
---------------
K
R
A
A
Q
K
T
L
----------------------------
A
E
E
V
T
K
L
V
H
G
E
E
---------------
A
L
R
Q
A
I
------
R
I
--------------
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
51.64
26%
31
- C3 -
3TS1
-
SYY_GEOSE
A:
[239-319]
-----------------------------------------------------------------------------------------------
I
W
------
L
D
K
E
K
T
S
P
---
Y
E
F
Y
Q
F
--
W
I
N
T
D
D
R
D
V
I
R
Y
L
K
Y
F
T
F
L
S
K
E
E
I
E
A
L
---
E
--------
Q
------
E
L
R
E
A
------------------
P
E
---------------
K
R
A
A
Q
K
T
L
----------------------------
A
E
E
V
T
K
L
V
H
G
E
E
---------------
A
L
R
Q
A
I
------
R
I
--------------
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
49
Fugue
50.47
15%
-30
* C4 *
1C1Y
1
RAF1_HUMAN
B:
[1-77]
------------------------------------------------------------------------------------------
S
N
T
I
R
V
F
------
L
P
N
K
-----------
Q
R
--
T
V
V
N
V
R
N
G
-------
M
S
L
H
D
C
L
M
K
A
L
K
---
V
--------
R
------
G
L
Q
P
E
C
--
C
-----------
A
V
F
R
L
---------------
L
H
E
H
K
G
---------------------------------
K
K
A
R
L
D
W
N
T
---------------
D
A
-
A
S
L
------
I
G
--------------
E
E
L
-----
Q
V
D
F
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
49.87
26%
32
- C3 -
4CXA
-
CCNK_HUMAN
B:
[81-139]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
F
P
R
---------------
Y
V
T
G
A
C
C
L
--------------
F
L
A
-----
G
----
K
V
E
E
T
P
--
K
K
C
K
D
---------------
I
I
-
K
T
A
------
R
S
--------------
L
L
N
-----
D
V
Q
F
G
Q
----
F
G
-
D
D
-
P
K
E
E
V
M
V
L
E
R
I
L
---------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
48.32
26%
36
- C3 -
4UN0
-
CCNK_HUMAN
A:
[81-139]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
F
P
R
---------------
Y
V
T
G
A
C
C
L
--------------
F
L
A
-----
G
----
K
V
E
E
T
P
--
K
K
C
K
D
---------------
I
I
-
K
T
A
------
R
S
--------------
L
L
N
-----
D
V
Q
F
G
Q
----
F
G
-
D
D
-
P
K
E
E
V
M
V
L
E
R
I
L
---------------------------------------------------------------------------------------------------------------------------------------------------