@TOME V2.3
(Nov 2016)

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Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
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Values color: [ Good | Correct | Middling | Bad ]Sequence color : MutatedHelixStrandConserved

Query sequence : Lmo1401: (2016-03-24 )
MKILFIGDVVGSIGRDAITEYLPQLKKKYKPTITVINGENAASGRGITEKIYKDFLELGANAVTLGNHTWDNRDIFEFIDEAKYLVRPANFPDDTTPGTGMVFVKSNQHEIAVINMQGRTFLADLDDPFRKMDYLIEEAKKRTNIIFVDFHAETTSEKEAMGWYLDGRVTAVVGTHTHVQTSDNRILPEGTAYLTDTGMTGPYDAILGMEKEAVIRRFKTALPTRFEVPKTGRAVLSGCLITLDESTGKAQKIDRILINEDHPFSFD

Atome Classification :

(20 SA) ------------------------------.........10.----------------.......20.......----.30........40.....----.----------..----50......-..60........70.--..--.....80....-.....90---...--.---.-----..-----.100..-----....----.110.......120.---------.--------.---------..--...130.......140..-.......150.....---------.------------.160...-.--...170.......180...---------------.--.----------..190.......200-.-......210.......220--..--...------....230.......240....--...250.......260.....----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome) (Ident) (Tito) (Num) (Ligand) (Uniprot) ------------------------------MKILFIGDVVGS----------------IGRDAITEYLPQLKKK----YKPTITVINGENAASGRG----I----------TE----KIYKDFLE-LGANAVTLGNHTWDN--RD--IFEFID-EAKY-LVRPANF---PDD--T---T-----PG-----TGMVFV-----KSNQ----HEIAVINMQGRTF-L---------A--------D---------LD--DPFRKMDYLIEEAK--KR-TNIIFVDFHAETTSE---------K------------EAMGWYL-D--GRVTAVVGTHTHVQTSDNR---------------I--L----------PEGTAYLTDTGMTGP-Y-DAILGMEKEAVIRRFKT----AL--PTR------FEVPKTGRAVLSGCLITLDES--TGKAQKIDRILINEDHPFSFD----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17 PsiBlast_CBE 99.4966%-106 - C2 -4B2O YMDB_BACSU C:[1-262] ------------------------------MRILFIGDVVGS----------------PGRDMVKEYVPKLKTK----YKPHFTIINGENAAHGKG----L----------TE----KIYHSLIQ-SGADAITMGNHTWDK--KE--IFDFID-DVPN-LVRPANF---PEG--T---------PG-----KGITYV-----KANG----KELAVINLQGRTF-L---------P--------P---------LD--DPFLKADELIAEAA--KR-TPYIFIDFHAEATSE---------K------------LALGWYT-D--GRASAVVGTHTHVQTADNR---------------I--L----------PKGTAYITDVGMTGP-Y-DGILGMDRETIIKRFKT----NL--PVR------FTVAE-GKTTLSGVVIDIDDQ--TKKAVKIERILINDDHMF-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16 PsiBlast_CBE 99.4766%-105 - C2 -4B2O YMDB_BACSU D:[1-262] ------------------------------MRILFIGDVVGS----------------PGRDMVKEYVPKLKTK----YKPHFTIINGENAAHGKG----L----------TE----KIYHSLIQ-SGADAITMGNHTWDK--KE--IFDFID-DVPN-LVRPANF---PEG--T---------PG-----KGITYV-----KANG----KELAVINLQGRTF-L---------P--------P---------LD--DPFLKADELIAEAA--KR-TPYIFIDFHAEATSE---------K------------LALGWYT-D--GRASAVVGTHTHVQTADNR---------------I--L----------PKGTAYITDVGMTGP-Y-DGILGMDRETIIKRFKT----NL--PVR------FTVAE-GKTTLSGVVIDIDDQ--TKKAVKIERILINDDHMF-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18 PsiBlast_CBE 99.3166%-106 - C2 -4B2O YMDB_BACSU B:[1-262] ------------------------------MRILFIGDVVGS----------------PGRDMVKEYVPKLKTK----YKPHFTIINGENAAHGKG----L----------TE----KIYHSLIQ-SGADAITMGNHTWDK--KE--IFDFID-DVPN-LVRPANF---PEG--T---------PG-----KGITYV-----KANG----KELAVINLQGRTF-L---------P--------P---------LD--DPFLKADELIAEAA--KR-TPYIFIDFHAEATSE---------K------------LALGWYT-D--GRASAVVGTHTHVQTADNR---------------I--L----------PKGTAYITDVGMTGP-Y-DGILGMDRETIIKRFKT----NL--PVR------FTVAE-GKTTLSGVVIDIDDQ--TKKAVKIERILINDDHMF-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 PsiBlast_PDB 99.1766%-106 - C2 -4B2O YMDB_BACSU A:[1-262] ------------------------------MRILFIGDVVGS----------------PGRDMVKEYVPKLKTK----YKPHFTIINGENAAHGKG----L----------TE----KIYHSLIQ-SGADAITMGNHTWDK--KE--IFDFID-DVPN-LVRPANF---PEG--T---------PG-----KGITYV-----KANG----KELAVINLQGRTF-L---------P--------P---------LD--DPFLKADELIAEAA--KR-TPYIFIDFHAEATSE---------K------------LALGWYT-D--GRASAVVGTHTHVQTADNR---------------I--L----------PKGTAYITDVGMTGP-Y-DGILGMDRETIIKRFKT----NL--PVR------FTVAE-GKTTLSGVVIDIDDQ--TKKAVKIERILINDDHMF-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2 PsiBlast_PDB 87.1545% -91 - C2 -1T70 - ? A:[1-255] ------------------------------MRVLFIGDVFGQ----------------PGRRVLQNHLPTIRPQ----FD--FVIVNMENSAGGFG----M----------HR----DAARGALE-AGAGCLTLGNHAWHH--KD--IYPMLS-EDTYPIVRPLNY---ADP--G---T-----PG-----VGWRTF-----DVNG----EKLTVVNLLGRVF-M---------E--------A---------VD--NPFRTMDALLE--R--DD-LGTVFVDFHAEATSE---------K------------EAMGWHL-A--GRVAAVIGTHTHVPTADTR---------------I--L----------KGGTAYQTDAGFTGP-H-DSIIGSAIEGPLQRFLT----ER--PHR------YGVAE-GRAELNG--VALHFE--GGKATAAERYRFIED----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22 HHSearch 86.6445% -95 - C2 -1T70 - ? A:[1-255] ------------------------------MRVLFIGDVFGQ----------------PGRRVLQNHLPTIRPQ------FDFVIVNMENSAGGFG----M----------HR----DAARGALE-AGAGCLTLGNHAWHH--KD--IYPMLSEDTYP-IVRPLNY---ADP--G---T-----PG-----VGWRTF-----DVNG----EKLTVVNLLGRVF-M---------E--------A---------VD--NPFRTMDALLERD----D-LGTVFVDFHAEATSE---------K------------EAMGWHL-A--GRVAAVIGTHTHVPTADTR---------------I--L----------KGGTAYQTDAGFTGP-H-DSIIGSAIEGPLQRFLT----ER--PHR------YGVAEGR-AELNGVALHFE----GGKATAAERYRFIED----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24 HHSearch 86.5741% -90 - C2 -1T71 Y349_MYCPN A:[5-272] ------------------------------IKFIFLGDVYGK----------------AGRNIIKNNLAQLKSK----YQADLVIVNAENTTHGKG----L----------SL----KHYEFLKE-AGVNYITMGNHTWFQ--KLD-LAVVIN--KKD-LVRPLNL---DTSFAFH--N-----LG-----QGSLVF-----EFNK----AKIRITNLLGTSVPL---------PF-------K---------TT--NPFKVLKELILKR----D-CDLHIVDFHAETTSE---------K------------NAFCMAF-D--GYVTTIFGTHTHVPSADLR---------------I--T----------PKGSAYITDVGMCGP-GFGSVIGANPEQSIRLFCA----GS--REH------FEVSKCG-AQLNGVFFEVDVN--TKKVIKTEAIRIVEDDPRY------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5 PsiBlast_PDB 85.9139% -88 - C2 -1T71 Y349_MYCPN A:[5-270] ------------------------------IKFIFLGDVYGK----------------AGRNIIKNNLAQLKSK----YQADLVIVNAENTTHGKG----L----------SL----KHYEFLKE-AGVNYITMGNHTWFQ--KL--DLAVVI-NKKD-LVRPLNL-----D--T---SFAFHNLG-----QGSLVF-----EFNK----AKIRITNLLGTSV-P---------L--------P---------FKTTNPFKVLKELI--LK--RD-CDLHIVDFHAETTSE---------K------------NAFCMAF-D--GYVTTIFGTHTHVPSADLR---------------I--T----------PKGSAYITDVGMCGPGF-GSVIGANPEQSIRLFCA----GS--REH------FEVSKCG-AQLNGVFFEVDVN--TKKVIKTEAIRIVEDDP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23 HHSearch 84.9338% -97 - C2 -2Z06 ? A:[1-251] ------------------------------MRVLFIGDVMAE----------------PGLRAVGLHLPDIRD------RYDLVIANGENAARGKG----L----------DR----RSYRLLRE-AGVDLVSLGNHAWDH--KE--VYALLE--SEP-VVRPLNY---PPG------T-----PG-----KGFWRL-----EVGG----ESLLFVQVMGRIF-M---------D--------P---------LD--DPFRALDRLLE--E--EK-ADYVLVEVHAEATSE---------K------------MALAHYLDG--R-ASAVLGTHTHVPTLDAT---------------R--L----------PKGTLYQTDVGMTGT-Y-HSIIGGEVETFLARFLT----GR--PQP------FRAAQGK-ARFHATELVFE----GGRPVAISPYVWEE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3 PsiBlast_PDB 80.9243%-102 - C2 -2Z06 ? A:[1-220] ------------------------------MRVLFIGDVMAE----------------PGLRAVGLHLPDIRDR----YD--LVIANGENAARGKG----L----------DR----RSYRLLRE-AGVDLVSLGNHAWDH--KE--VYALL--ESEP-VVRPLNY---PPG--T---------PG-----KGFWRL-----EVGG----ESLLFVQVMGRIF-M---------D--------P---------LD--DPFRALDRLLEEEK-----ADYVLVEVHAEATSE---------K------------MALAHYL-D--GRASAVLGTHTHVPTLDAT---------------R--L----------PKGTLYQTDVGMTGT-Y-HSIIGGEVETFLARFLT----GR--PQP------F-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21 PsiBlast_CBE 80.5943%-100 - C2 -2Z06 ? B:[1-220] ------------------------------MRVLFIGDVMAE----------------PGLRAVGLHLPDIRDR----YD--LVIANGENAARGKG----L----------DR----RSYRLLRE-AGVDLVSLGNHAWDH--KE--VYALL--ESEP-VVRPLNY---PPG--T---------PG-----KGFWRL-----EVGG----ESLLFVQVMGRIF-M---------D--------P---------LD--DPFRALDRLLEEEK-----ADYVLVEVHAEATSE---------K------------MALAHYL-D--GRASAVLGTHTHVPTLDAT---------------R--L----------PKGTLYQTDVGMTGT-Y-HSIIGGEVETFLARFLT----GR--PQP------F-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20 PsiBlast_CBE 80.5643%-101 - C2 -2Z06 ? C:[1-220] ------------------------------MRVLFIGDVMAE----------------PGLRAVGLHLPDIRDR----YD--LVIANGENAARGKG----L----------DR----RSYRLLRE-AGVDLVSLGNHAWDH--KE--VYALL--ESEP-VVRPLNY---PPG--T---------PG-----KGFWRL-----EVGG----ESLLFVQVMGRIF-M---------D--------P---------LD--DPFRALDRLLEEEK-----ADYVLVEVHAEATSE---------K------------MALAHYL-D--GRASAVLGTHTHVPTLDAT---------------R--L----------PKGTLYQTDVGMTGT-Y-HSIIGGEVETFLARFLT----GR--PQP------F-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
42 Fugue 79.5436% -70 - C2 -1T71 Y349_MYCPN A:[1-281] --------------------------MMNSIKFIFLGDVYGK----------------AGRNIIKNNLAQLKSK----YQADLVIVNAENTTHGKG----L----------SL----KHYEFLKE-AGVNYITMGNHTWFQ--KL--DLAVVI-NKKD-LVRPLNLDTSFAF--H---N-----LG-----QGSLVF-----EFNK----AKIRITNLLGTSV-P---------L--------P---------FK--TTNPFKVLKELILK--RD-CDLHIVDFHAETTSE---------K------------NAFCMAF-D--GYVTTIFGTHTHVPSADLR---------------I--T----------PKGSAYITDVGMCGPGF-GSVIGANPEQSIRLFCA----GS--REH------FE-VSKCGAQLNGVFFEVDVN--TKKVIKTEAIRIVEDDPRYLKQDYFNLI---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19 PsiBlast_CBE 79.4043% -97 - C2 -2Z06 ? D:[1-220] ------------------------------MRVLFIGDVMAE----------------PGLRAVGLHLPDIRDR----YD--LVIANGENAARGKG----L----------DR----RSYRLLRE-AGVDLVSLGNHAWDH--KE--VYALL--ESEP-VVRPLNY---PPG--T---------PG-----KGFWRL-----EVGG----ESLLFVQVMGRIF-M---------D--------P---------LD--DPFRALDRLLEEEK-----ADYVLVEVHAEATSE---------K------------MALAHYL-D--GRASAVLGTHTHVPTLDAT---------------R--L----------PKGTLYQTDVGMTGT-Y-HSIIGGEVETFLARFLT----GR--PQP------F-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29 HHSearch 63.2219% -85 - C2 -3IVE ? A:[7-269] ------------------------------VTIIYTNDLHAHVEPYKVPWIADGKRDIGGWANITTLVKQEKAK----NKATWFFDAGDYFTGPYISSLTK----------GK----AIIDIMNT-MPFDAVTIGNHEFDH--GWDNTLLQLS-QAKF-PIVQGNI---FYQNSSKS-F-----WD-----KPYTII-----EKDG----VKIGVIGLHGVFA-FNDTVSAATRV--------GIE-------AR--DEIKWLQRYIDELK--GK-VDLTVALIHEGVPAR---------QSSMDVRRALDKDIQTASQV-K--G-LDILITGHAHVGTPEPI-----------------------------KVGNTLILSTDSGGI-D-VGKLVLDYKEK-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25 HHSearch 58.9617% -91 - C2 -2Z1A ? A:[30-291] ------------------------------LTLVHTNDTHAHLEPVELTLSGEKTPV-GGVARRVALFDRVWAR----AKNPLFLDAGDVFQGTLYFNQYR----------GL----ADRYFMHR-LRYRAMALGNHEFDL--GPGPLADFLK-GARF-KVVSANV---DASREPRLKG-----LF-----APYAVV-----VVGG----ERVGIIGLTTPDT-R---------EISNPGP--TVA-------FL--DPYESAQKAVYELLA-KG-VNKIVVLSHLGYGED----------------------LKLARRL-V--G-VQVIVGGHSHTLLGSFPHKELSPAGPYPTV--VKNP----------EGKDVLVVQAWEWGK-V-VGLLEVTFDAK-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4 PsiBlast_PDB 57.2743% -5 - C2 -2CV9 - ? A:[2-220] -------------------------------RVLFIGDVMAE----------------PGLRAVGLHLPDIRDR----YD--LVIANGENAARGKG----L----------DR----RSYRLLRE-AGVDLVSLGNHAWDH--KE--VYALL--ESEP-VVRPLNY---PPG--T---------PG-----KGFWRL-----EVGG----ESLLFVQVMGRIF-M---------D--------P---------LD--DPFRALDRLLEEEK-----ADYVLVEVHAEATSE---------K------------MALAHYL-D--GRASAVLGTHTHVPTLDAT---------------R--L----------PKGTLYQTDVGMTGT-Y-HSIIGGEVETFLARFLT----GR--PQP------F-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30 HHSearch 56.4518% -74 * C2 *1HP1 USHA_ECOLI A:[9-280] ------------------------------ITVLHTNDHHGHFWRNEYGE--------YGLAAQKTLVDGIRKEVAAEGGSVLLLSGGDINTGVPESDLQD----------AE----PDFRGMNL-VGYDAMAIGNHEFDN--PLTVLRQQEK-WAKF-PLLSANI---YQKSTGE--R-----LF-----KPWALF-----KRQD----LKIAVIGLTTDDT-A---------KIGNPEYFTDIE-------FR--KPADEAKLVIQELQQTEK-PDIIIAATHMGHYDNGEHGSNAPGD------------VEMARAL-PAGS-LAMIVGGHSQDPVCMAAENKKQVDYVPGTPCKP--D----------QQNGIWIVQAHEWGK-Y-VGRADFEFRNG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27 HHSearch 53.8717% -69 - C2 -3JYF ? A:[9-332] ------------------------------LRIMETTDLHSNMMDFDYYKDAATEK--FGLVRTASLIEQARAE----VKNSVLVDNGDVIQGSPLGD--YMAAKGLKEGDVH----PVYKAMNT-LNYAVGNLGNHEFNY--GLDFLHKALA-GAKF-PYVNANI---IDAKTGK--P-----MF-----TPYLIQDTRVVDSDGQIHTLRIGYIGFVPPQI-M---------TWDKANLNGKVT-------VN--DITETARKYIPEMRA-KG-ADVVVVVAHSGLSAD---------PYQAMAENS----VYYLSQV-P--G-VDAIMFGHAHAVFPGKD---------------F--ANIKGADIAKGTLNGVPAVMPGMWGD-H-LGVVDLVLNNDSGKWQVTQSKAEARPIYDAVAKKSLAAED--GKLVSVLKADHDA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44 Fugue 53.3417% -74 - C2 -3ZTV 5NTD_HAEIN A:[8-573] HKAVELSILHINDHHSYLEPHETRINLNGQQTKVDIG----------------------GFSAVNAKLNKLRKK----YKNPLVLHAG-DAITGTL----Y----------FTLFGGSADAAVMNAGNFHYFTLGNHEFDAGNEG--LLKLLE-PLKI-PVLSANV---IPD--K---S-----SILYNKWKPYDIF-----TVDG----EKIAIIGLDTVNK-T---------V--------NSSSPGKDVKFY--DEIATAQIMANALK--QQGINKIILLSHAGSEKN---------I------------EIAQK-V-N--D-IDVIVTGDSH------Y---------------L--Y----------GNDELRSLKLPVIYE-Y----------PLEFKNPN----GE--PVF------VMEGWAYSAVVGDLGVKFSPEGIASITRKIPHVLMSSHKLQVKNSEGKWAELTGDERKKALDTLKSMKSISLDDHDAKTDKLIAKYKSEKDRLAQEIVGVITGSAMPGGSANRIPNKAGSNPEGSIATRFIAETMYNELKTVDLTIQNAGGVRADILPGNVTFNDAYTFLPFGNTLYTYKMEGSLVKQVLEDAMQFALVDGSTGAFPYGAGIRYEANETPNAEGKRLVSVEVLNKTQQWEPIDDNKRYLVGTNAYVAGGKDGYKTFGKLFNDPKYEGVDTYLPDAESFIKFMKKHPHFEAYTSSNVKFNAST