@TOME V2.3
(Nov 2016)

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3D Common Core:

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Complexes Modeling
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Values color: [ Good | Correct | Middling | Bad ]Sequence color : MutatedHelixStrandConserved

Query sequence : Lmo1462: (2016-03-25 )
MSEPFKSGFVAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTDESQIIFIDTPGIHKPKHKLGDFMVKIALNTFQEVDLIYFVIDASTGFGRGDEFIIEKLKNVQTPVFLLINKIDLIAPEDLFKLIEQYRDLMDFDEIIPISALQGNNVPNLLEQTNANLEIGPMYYPKDQITDHPERFIISELIREQVLQLTREEVPHSVAVVIEGIEKNPKTEKLTINATIIVERSTQKGIIIGKQGQMLKQIGMRARKEIERLLGSKVFLEIWVKVQKNWRDKEHYLQDYGFDREEY

Atome Classification :

(26 SA) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........-10........20........30........40........50-.-.......60...-----.-.-..-.-70-.-----...--.....---80........90........100.......-110..--.--.....120.......-130-.--.----......-140.---..-...--.150.......160.......170.......180.-......190.......200.......210.......---220..-.....230.......240.......250.......260.......270.......280.......290.......300
(Atome) (Ident) (Tito) (Num) (Ligand) (Uniprot) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSEPFKSGF-VAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYT-T-DESQIIFIDTPG-----I-H-KP-K-H--K-----LGD--FMVKI---ALNTFQEVDLIYFVIDASTGFGRGDEFIIE-K-LKN--V--QTPVFLLINKIDLIA-P-E-D--L----FKLIEQ-YRDL---MD-FDE--IIPISALQGNNVPNLLEQTNANLEIGPMYYPKDQI-TDHPERFIISELIREQVLQLTREEVPHSVAVVIEGI---EKNPK-TEKLTINATIIVERSTQKGIIIGKQGQMLKQIGMRARKEIERLLGSKVFLEIWVKVQKNWRDKEHYLQDYGFDREEY
63 HHSearch 96.0648%-119 - C2 -3IEV ERA_AQUAE A:[7-307] --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HMKVGY-VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKN-IPNEAQIIFLDTPG-----I-Y-EP-K-KSDV-----LGH--SMVEI---AKQSLEEADVILFMIDATEGWRPRDEEIYQNF-IKP--L--NKPVIVVINKIDKIG-P-A-KN-V----LPLIDE-IHKK---HPELTE--IVPISALKGANLDELVKTILKYLPEGEPLFPEDMI-TDLPLRLLAAEIVREKAMMLTREEVPTSIAVKINEI---KPGDANPNMLVIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYLELWVKVVPDWRRRPEYVRLFGYA----
2 PsiBlast_PDB 95.5247%-126 - C2 -3R9W ERA_AQUAE A:[7-305] ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKVGY-VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPG-----I-Y-EP-K-K--SDV---LGH--SMVEI---AKQSLEEADVILFMIDATEGWRPRDEEIYQ-NFIKP--L--NKPVIVVINKIDKIG-PAK-N--V----LPLIDEIHKKH---PE-LTE--IVPISALKGANLDELVKTILKYLPEGEPLFPEDMI-TDLPLRLLAAEIVREKAMMLTREEVPTSIAVKINEIKPGDANPN-M--LVIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYLELWVKVVPDWRRRPEYVRLFGY-----
1 PsiBlast_PDB 95.0747%-123 - C2 -3IEV ERA_AQUAE A:[8-306] ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKVGY-VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPG-----I-Y-EP-K-K--SDV---LGH--SMVEI---AKQSLEEADVILFMIDATEGWRPRDEEIYQ-NFIKP--L--NKPVIVVINKIDKIG-PAK-N--V----LPLIDEIHKKH---PE-LTE--IVPISALKGANLDELVKTILKYLPEGEPLFPEDMI-TDLPLRLLAAEIVREKAMMLTREEVPTSIAVKINEIKPGDANPN-M--LVIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYLELWVKVVPDWRRRPEYVRLFGY-----
3 PsiBlast_PDB 94.4847%-120 - C2 -3R9X ERA_AQUAE A:[7-305] ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKVGY-VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPG-----I-Y-EP-K-K--SDV---LGH--SMVEI---AKQSLEEADVILFMIDATEGWRPRDEEIYQ-NFIKP--L--NKPVIVVINKIDKIG-PAK-N--V----LPLIDEIHKKH---PE-LTE--IVPISALKGANLDELVKTILKYLPEGEPLFPEDMI-TDLPLRLLAAEIVREKAMMLTREEVPTSIAVKINEIKPGDANPN-M--LVIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYLELWVKVVPDWRRRPEYVRLFGY-----
22 PsiBlast_CBE 88.2640%-121 - C2 -1EGA ERA_ECOLI B:[8-296] -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGF-IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHT-E-GAYQAIYVDTPG-----L-HMEE-K-R--A-----INR--LMNKA---ASSSIGDVELVIFVVEG-TRWTPDDEMVLN-K-LRE--G--KAPVILAVNKVDNVQ-E-KAD--L----LPHLQF-LASQ---MN-FLD--IVPISAETGLNVDTIAAIVRKHLPEATHHFPEDYI-TDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERF---VSNER-G-GYDINGLILVEREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDERALRSLG------
6 PsiBlast_PDB 88.2140%-121 - C2 -3IEU ERA_ECOLI A:[8-296] -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGF-IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHT-E-GAYQAIYVDTPG-----L-HMEE-K-R--A-----INR--LMNKA---ASSSIGDVELVIFVVEG-TRWTPDDEMVLN-K-LRE--G--KAPVILAVNKVDNVQ-E-KAD--L----LPHLQF-LASQ---MN-FLD--IVPISAETGLNVDTIAAIVRKHLPEATHHFPEDYI-TDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERF---VSNER-G-GYDINGLILVEREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDERALRSLG------
21 PsiBlast_CBE 87.9040%-121 - C2 -3IEU ERA_ECOLI B:[8-296] -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGF-IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHT-E-GAYQAIYVDTPG-----L-HMEE-K-R--A-----INR--LMNKA---ASSSIGDVELVIFVVEG-TRWTPDDEMVLN-K-LRE--G--KAPVILAVNKVDNVQ-E-KAD--L----LPHLQF-LASQ---MN-FLD--IVPISAETGLNVDTIAAIVRKHLPEATHHFPEDYI-TDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERF---VSNER-G-GYDINGLILVEREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDERALRSLG------
62 HHSearch 87.3638%-101 - C2 -1WF3 ERA_THET8 A:[3-298] -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EKTYSGF-VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILT-E-GRRQIVFVDTPG-----L-H-KP-M-D--A-----LGE--FMDQE---VYEALADVNAVVWVVDLRHPPTPEDELVAR-A-LKPLVG--KVPILLVGNKLDAAK-Y-P-E--------EAMKA-YHEL---LP-EAE--PRMLSALDERQVAELKADLLALMPEGPFFYPEDYAKSDQTFGEWVAEILREEAMKRLWHEVPYAVATKVEEV---AERE--NGVLYIKAILYVERPSQKAIVIGEGGRKIKEIGQATRKQLEALLGKKVYLDLEVKVYPDWRKDPEALRELGYRS---
8 PsiBlast_PDB 86.8238%-108 - C2 -1WF3 ERA_THET8 A:[3-296] -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EKTYSGF-VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILT-E-GRRQIVFVDTPG-----L-H-KP-M-D--A-----LGE--FMDQE---VYEALADVNAVVWVVDLRHPPTPEDELVAR-A-LKP--LVGKVPILLVGNKLDAAKYP-E-E--A----MK---A-YHEL---LP-EAE--PRMLSALDERQVAELKADLLALMPEGPFFYPEDYAKSDQTFGEWVAEILREEAMKRLWHEVPYAVATKVEEV---AER-E-NGVLYIKAILYVERPSQKAIVIGEGGRKIKEIGQATRKQLEALLGKKVYLDLEVKVYPDWRKDPEALRELGY-----
4 PsiBlast_PDB 86.0840%-118 - C2 -1EGA ERA_ECOLI A:[8-295] -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGF-IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHT-E-GAYQAIYVDTPG-----L-HMEE-K-R--A-----INR--LMNKA---ASSSIGDVELVIFVVEG-TRWTPDDEMVLN-K-LRE--G--KAPVILAVNKVDNVQ-E-KAD--L----LPHLQF-LASQ---MN-FLD--IVPISAETGLNVDTIAAIVRKHLPEATHHFPEDYI-TDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERF---VSNER-G-GYDINGLILVEREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDERALRSL-------
61 HHSearch 85.2639%-114 - C2 -1EGA ERA_ECOLI A:[4-295] -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DKSYCGF-IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHT-E-GAYQAIYVDTPG-----L-H-ME-EKR--A-----INR--LMNKA---ASSSIGDVELVIFVVEGTR-WTPDDEMVLN-K-LRE--G--KAPVILAVNKVDNVQ-E-K-AD-L----LPHLQF-LASQ---MN-FLD--IVPISAETGLNVDTIAAIVRKHLPEATHHFPEDYI-TDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERF---VSNE--RGGYDINGLILVEREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDERALRSL-------
51 Fugue 66.3538%-106 - C2 -1EGA ERA_ECOLI A:[4-182] -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DKSYCGF-IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHT-E-GAYQAIYVDTPG-----LHM-EE-K-R--A-----INR--LMNKA---ASSSIGDVELVIFVVEGTR-WTPDDEMVLN-K-LRE--G--KAPVILAVNKVDNVQEK-A-D--L----LPHLQF-LASQ---MN-FLD--IVPISAETGLNVDTIAAIVRKHLPEATHHFPE------------------------------------------------------------------------------------------------------------------------------
53 Fugue 58.8423% -91 - C2 -1XZP MNME_THEMA A:[27-482] SSVDKLMDTIVAVATPPGKGAIAILRLSGPDSWKIVQKHLRTRSKIVPRKAIHGWIHENGEDVDEVVVVFYKSPKSYTGEDMVEVMCHGGPLVVKKLLDLFLKSGARMAEPGEFTKRAFLNGKMDLTSAEAVRDLIEAKSETSLKLSLRNLKGGLRDFVDSLRRELIEVLAEIRVELDYPDEIETNTGEVVTRLERIKEKLTEELKKADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIV-I-RGILFRIVDTAG-----V-R-SETN-D--L-----VER--LGIER---TLQEIEKADIVLFVLDASSPLDEEDRKILE-R-IKN------KRYLVVINKVDVVE-K-I-N--E----EEIKNK-LGTD-------RH--MVKISALKGEGLEKLEESIYRET---------QEI-FERGSDSLITNLRQKQLLENVKGHLEDAIKSLKEG---------------------------------MPVDMASIDLERALNLLDEVTGRSFREDLLDTIFSNFCVGK-------------
20 PsiBlast_PDB 58.7328%-119 - C2 -3PQC ENGB_THEMA A:[21-186] --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PLK-GE-VAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRS--INFYL-V-N-SKYYFVDLPGYGYAKV-S-KK-E-R--M-----LWK--RLVED---YFKNRWSLQMVFLLVDGRIPPQDSDLMMVE-W-MKS--L--NIPFTIVLTKMDKVK-M-S-E--R----AKKLEE-HRKV---FSKYGEYTIIPTSSVTGEGISELLD---------------------------------------------------------------------------------------------------------------------------------------------
11 PsiBlast_PDB 58.5332% -99 - C2 -1MKY DER_THEMA A:[4-182] ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VLIVGRPNVGKSTLFNKLVK--------------DPVQDTVE-W-YGKTFKLVDTCG-----VFD-NP-Q-D--I-----ISQ--KMKEV---TLNMIREADLVLFVVDGKRGITKEDESLAD-F-LRK--S--TVDTILVANKAENLR-E-F-E--R----EVKPEL-YS-----LG-FGE--PIPVSAEHNINLDTMLETIIKKLE--------------------------------------------------------------------------------------------------------------------------------------
14 PsiBlast_PDB 58.1534%-142 - C2 -4DCV - DER_BACSU A:[26-183] ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VAIVGRPNVGKSTIFNRIAGERIS-----------RIYSSAE-W-LNYDFNLIDTGG--------------------------P-FLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAK-I-LYR--T--KKPVVLAVNKL--------------------YDF-YS-----LG-FGE--PYPISGTHGLGLGDLLD---------------------------------------------------------------------------------------------------------------------------------------------
66 HHSearch 58.0027%-118 - C2 -1MKY DER_THEMA A:[178-355] ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TDAIK-VAIVGRPNVGKSTLFNAILNKERALVSPIP------VDDEVF-I-DGRKYVFVDTAG-----L------------------EK--YSNYR---VVDSIEKADVVVIVLDATQGITRQDQRMAG-L-MER--R--GRASVVVFNKWDLVV-H-R-EKRY----DEFTKL-FREKLYFID-YSP--LIFTSADKGWNIDRMIDAMNLAYAS-------------------------------------------------------------------------------------------------------------------------------------
75 HHSearch 57.7128% -96 - C2 -2DYK ? A:[2-160] ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HK-VVIVGRPNVGKSSLFNRLLKKRS-----------DLKEGVVE-T-DRGRFLLVDTGG-----L-W-SG-D-K--------WEK--KIQEK---VDRALEDAEVVLFAVDGRAELTQADYEVAE-Y-LRR--K--GKPVILVATKVDDPK-H-E-L--Y----LG--PL-Y--G---LG-FGD--PIPTSSEHARGLEELLEAIWERL---------------------------------------------------------------------------------------------------------------------------------------
19 PsiBlast_PDB 57.4528%-101 - C2 -2DYK ? A:[4-154] ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VVIVGRPNVGKSSLFNRLLKKRS-----------DLKEGVVE-T-DRGRFLLVDTGG-----L-W-SG-D-K--W-----EKK--IQEKV---D-RALEDAEVVLFAVDGRAELTQADYEVAE-Y-LRR--K--GKPVILVATKVD--D-P-K-H--E----LYLGPL-YG-----LG-FGD--PIPTSSEHARGLEELLE---------------------------------------------------------------------------------------------------------------------------------------------
76 HHSearch 57.2627% -95 - C2 -3PQC ENGB_THEMA A:[19-193] -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPPLKGE-VAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFY----L-VNSKYYFVDLPG-----Y-G-YA-K-V--SKKERMLWK--RLVED---YFKNRWSLQMVFLLVDGRIPPQDSDLMMVE-W-MKS--L--NIPFTIVLTKMDKVK-M-S-E--RAKKLEEHRKV-FS-K---YG-EYT--IIPTSSVTGEGISELLDLISTLLK--------------------------------------------------------------------------------------------------------------------------------------
23 PsiBlast_CBE 57.0834%-138 - C2 -4KYU DER_BACSU B:[6-157] ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VAIVGRPNVGKSTIFNRIA-----------------IYSSAE-W--NYDFNLIDTGG-----I-----------D-----IGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAK-I-LYR--T--KKPVVLAVNKLD--N-T-E-M--R----ANIYDF-YS-----LG-FGE--PYPISGTHGLGLGDLLD---------------------------------------------------------------------------------------------------------------------------------------------
13 PsiBlast_PDB 56.6634%-141 - C2 -4DCU DER_BACSU A:[26-183] ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VAIVGRPNVGKSTIFNRIAGERIS-----------RIYSSAE-W-LNYDFNLIDTGG--------------------------P-FLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAK-I-LYR--T--KKPVVLAVNKL--------------------YDF-YS-----LG-FGE--PYPISGTHGLGLGDLLD---------------------------------------------------------------------------------------------------------------------------------------------
15 PsiBlast_PDB 56.2434%-145 - C2 -2HJG DER_BACSU A:[6-166] ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VAIVGRPNVGKSTIFNRIAGERIS-----------RIYSSAE-W-LNYDFNLID-----------------------------P-FLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAK-I-LYR--T--KKPVVLAVNKLD--N--------------NIYDF-YS-----LG-FGE--PYPISGTHGLGLGDLLD---------------------------------------------------------------------------------------------------------------------------------------------
70 HHSearch 55.2130%-115 - C2 -3GEH MNME_NOSS1 A:[222-385] ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RTGLK-VAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLV-V-GGIPVQVLD-----------------------------------------QAANTADLVLLTIDAATGWTTGDQEIYE-Q-V----K--HRPLILVMNKIDLVE-K-Q-L--I----TS-----LEYP---EN-ITQ--IVHTAAAQKQGIDSLETAILEIVQTG------------------------------------------------------------------------------------------------------------------------------------
16 PsiBlast_PDB 55.1334%-113 - C2 -4KYU DER_BACSU A:[6-157] ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VAIVGRPNVGKSTIFNRIAGERI----------RDRIYSSAE-W-LNYDFNLIDTGG-----I-----------D-----IGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAK-I-LYR--T--KKPVVLAVNKLD--N-T-E-M--R----ANIYDF-YS-----LG-FGE--PYPISGTHGLGLGDLLD---------------------------------------------------------------------------------------------------------------------------------------------
10 PsiBlast_PDB 51.8037%-126 - C2 -3GEH MNME_NOSS1 A:[219-343] -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ELLRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLV-V-GGIPVQVLD-----------------------------------------QAANTADLVLLTIDAATGWTTGDQEIYE-Q-VKH------RPLILVMNKIDLV--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------