@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo1469: (2016-03-25 )
MSKTVVRKNESLEDALRRFKRTVSKSGTLQESRKREFYEKPSVKRKKKSEAARKRKF
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------......-...---10........20-.....-....30.-----.......40........50......-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSKTVV-RKN---
E
S
L
E
D
A
L
R
R
F
K
--
R
T
VSK-SG
T
L
Q
E
S
-----
R
K
R
E
F
Y
EKPSV
K
R
K
K
K
S
E
A
A
RKRKF-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
78.74
26%
-7
- C2 -
5AJ3
-
?
U:
[8-64]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
A
R
T
V
M
-
V
Q
E
---
G
N
V
E
G
A
Y
R
T
L
N
--
R
I
L
T
M
-
D
G
L
I
E
D
I
-----
K
R
R
R
Y
Y
E
K
P
C
R
R
R
Q
R
E
S
Y
E
T
C
R
R
I
Y
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
69.72
55%
28
- C2 -
4A2I
-
RS21_ECOLI
U:
[5-53]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
-
R
E
N
---
E
P
F
D
V
A
L
R
R
F
K
--
R
S
C
E
K
-
A
G
V
L
A
E
V
-----
R
R
R
E
F
Y
E
K
P
T
T
E
R
K
R
A
K
A
S
A
V
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
66.59
52%
22
- C2 -
4ADV
-
RS21_ECOLI
U:
[3-53]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
K
V
-
R
E
N
---
E
P
F
D
V
A
L
R
R
F
K
--
R
S
C
E
K
-
A
G
V
L
A
E
V
-----
R
R
R
E
F
Y
E
K
P
T
T
E
R
K
R
A
K
A
S
A
V
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
60.03
26%
21
- C2 -
3J6V
-
RT21_BOVIN
U:
[8-64]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
A
R
T
V
M
-
V
Q
E
---
G
N
V
E
G
A
Y
R
T
L
N
--
R
I
L
T
M
-
D
G
L
I
E
D
I
-----
K
R
R
R
Y
Y
E
K
P
C
R
R
R
Q
R
E
S
Y
E
T
C
R
R
I
Y
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
57.57
26%
21
- C2 -
3J6V
-
RT21_BOVIN
U:
[1-87]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAKHLKF
I
A
R
T
V
M
-
V
Q
E
---
G
N
V
E
G
A
Y
R
T
L
N
--
R
I
L
T
M
-
D
G
L
I
E
D
I
-----
K
R
R
R
Y
Y
E
K
P
C
R
R
R
Q
R
E
S
Y
E
T
C
R
R
I
Y
NMEMARKINFLMRKNRADPWQGC--------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
56.85
22%
46
- C2 -
2KL8
-
?
A:
[1-85]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
E
M
D
I
R
F
R
G
D
D
L
---
E
A
F
E
K
A
L
K
E
M
I
--
R
Q
A
R
K
F
A
G
T
V
T
Y
T
L
D
GN
D
L
E
I
R
I
T
G
V
P
E
Q
V
R
K
E
L
A
K
E
A
E
R
L
A
K
E
F
N
I
T
V
T
Y
T
I
RLEHHHHHH------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
56.27
55%
52
- C2 -
2YKR
-
RS21_ECOLI
U:
[5-53]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
-
R
E
N
---
E
P
F
D
V
A
L
R
R
F
K
--
R
S
C
E
K
-
A
G
V
L
A
E
V
-----
R
R
R
E
F
Y
E
K
P
T
T
E
R
K
R
A
K
A
S
A
V
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
56.18
19%
42
- C2 -
2JHN
8
?
A:
[1-295]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
W
R
I
E
L
KHAVN
W
E
L
K
M
K
F
FVLPELPTP
D
V
V
E
SG
V
W
R
R
A
I
V
L
DG
R
A
V
A
V
M
A
Y
P
ESER
T
I
V
V
E
G
NFENRE
W
E
A
V
R
R
K
L
V
E
Y
L
GLQNP
E
E
L
Y
R
F
M
D
G
D
E
K
L
R
M
L
K
N
R
F
YGF
G
R
A
G
L
MSMS
V
F
E
G
I
A
K
A
I
I
-
Q
Q
Q
---
I
S
F
V
V
A
E
K
L
A
A
--
K
I
V
G
R
-
F
G
D
E
V
E
W
-----
N
G
L
K
F
Y
G
F
P
T
Q
E
A
I
L
K
A
G
V
E
G
L
R
E
C
GLS
R
R
K
A
E
L
I
V
E
I
A
K
EENLEELKEWG
E
E
E
A
Y
E
Y
L
T
SFKGIG
R
W
T
A
E
L
V
L
S
IALGKNVFPADD
L
G
V
R
R
A
V
S
R
L
YFNGEIQS
A
E
K
V
R
E
I
A
R
E
RFGRF
A
R
D
I
L
F
Y
L
F
L
Y
D
R
F
FSKELV------------------------------------------------------------
6
HHSearch
54.78
53%
52
- C2 -
2YKR
-
RS21_ECOLI
U:
[3-53]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
K
V
-
R
E
N
---
E
P
F
D
V
A
L
R
R
F
K
--
R
S
C
E
K
-
A
G
V
L
A
E
V
-----
R
R
R
E
F
Y
E
K
P
T
T
E
R
K
R
A
K
A
S
A
V
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
54.63
15%
-5
- C1 -
1L1L
-
RTPR_LACLE
A:
[4-724]
E
I
S
L
S
A
E
F
I
D
R
V
K
A
S
VKPHWGKLG
W
V
T
Y
K
R
T
Y
A
R
W
L
PEKG
R
S
E
N
W
D
E
T
V
K
R
V
V
E
G
N
I
N
L
D
P
R
L
Q
D
SPS
L
E
L
K
Q
S
L
T
E
E
A
E
R
L
Y
K
L
I
Y
G
LGATPS
G
R
N
L
W
ISGT
D
Y
Q
R
R
T
GDSLNN
C
W
F
V
A
IRPQKYGDSKIVPSYLGKQEKAVS
M
P
F
S
F
L
F
D
E
L
M
K
G
G
G
V
G
F
S
VA
R
S
N
I
S
Q
IPRVDFA
I
D
L
Q
L
V
V
D
ETSES
Y
D
A
S
V
K
V
G
A
V
G
KNE
L
V
Q
D
AD
S
I
Y
Y
R
L
P
DT
R
E
G
W
V
L
A
N
A
L
L
I
D
L
H
F
AQTNPDRKQ
K
L
I
L
D
LSDIRPYGAEIHGFGGTASGP
M
P
L
I
S
M
L
L
D
V
N
E
V
L
N
N
K
AG
G
R
L
T
A
V
D
A
A
D
I
C
N
L
I
G
K
A
V
V
AGNA
E
L
A
L
G
S
NDD
Q
D
F
I
S
MKQD
Q
E
K
L
M
H
HRWA
S
N
N
S
V
A
V
D
SAFSGY
Q
P
I
A
A
G
I
R
E
NG
E
P
G
I
V
N
L
D
L
S
K
N
Y
GRIVDGYQAGIDGDVEGTNPCGEISLANG
E
P
C
N
L
F
E
V
F
P
L
I
A
E
E
Q
GWD
L
Q
E
V
F
A
L
A
A
R
Y
A
K
R
V
T
F
SPYDW
E
I
S
R
E
I
I
Q
K
N
RRIGI
S
M
S
G
I
Q
D
W
L
L
T
R
L
GNRVVT
G
F
K
D
D
F
D
PETHE
A
I
K
V
P
V
Y
D
K
R
A
I
K
M
V
D
Q
L
Y
K
A
V
V
K
A
D
Q
D
Y
S
K
T
L
GCNESIK
H
T
T
V
K
PS
G
T
V
A
K
L
A
GASEGMHFHYGAYLI
Q
R
I
R
F
Q
DSDPL
L
P
A
L
K
A
C
G
Y
R
T
E
ADIYTEN
T
T
C
V
E
F
P
I
K
A
VGADNPNFASAGTVS
I
A
E
Q
F
A
T
Q
A
F
L
Q
T
YWSD
N
A
V
S
C
T
I
T
-
F
Q
D
---
S
E
G
D
Q
V
E
S
L
L
R
Q
Y
R
F
I
T
K
-
S
T
S
L
L
P
Y
-----
F
G
G
S
L
Q
Q
A
P
K
E
P
I
D
K
E
T
Y
E
K
R
S
Q
E
I
TGN
V
E
E
V
F
S
Q
L
N
S
D
V
KDLE------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
51.27
11%
-16
- C2 -
1Q9U
4
?
A:
[5-30]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
H
Y
T
V
-
D
V
S
---
T
G
M
N
E
T
I
E
R
L
E
--
E
S
L
K
Q
-
E
G
F
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
46.80
9%
-25
* C2 *
3HPW
-
C:
[10-31]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
N
Q
E
G
M
A
E
V
A
--
R
F
I
E
M
-
N
G
S
F
A
D
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
45.04
12%
-10
- C2 -
1HYN
-
B3AT_HUMAN
P:
[56-348]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KVYVELQELVMDEKNQELRWMEAARWVQLEENLGENGAWGRPHLSHLTFWSLLELRRV
F
T
K
G
T
V
-
L
L
D
LQE
T
S
L
A
G
V
A
N
Q
L
L
--
D
R
F
I
F
-
E
D
Q
I
R
P
Q
-----
D
R
E
E
L
L
R
A
L
L
L
K
H
S
H
A
G
E
L
E
A
L
G
G
V
KPAVLTRSGDPSQPLLPQHSSLETQLFCEQGDGGTEGHSPSGILEKIPPDSEATLVLVGRADFLEQPVLGFVRLQEAAELEAVELPVPIRFLFVLLGPEAPHIDYTQLGRAAATLMSERVFRIDAYMAQSRGELLHSLEGFLDCSLVLPPTDAPSEQALLSLVPVQRELLRRRYQ
11
HHSearch
44.26
10%
-8
- C2 -
3WZ4
3
?
A:
[42-71]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
G
W
D
Q
F
L
--
G
A
L
E
Q
-
S
N
N
L
D
A
V
-----
K
A
K
K
L
V
V
S
A
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
44.20
10%
7
- C2 -
3WZ3
-
?
A:
[42-71]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
E
G
F
A
G
Y
V
--
N
A
L
Q
A
-
S
N
I
L
E
T
I
-----
K
K
E
K
M
N
L
T
A
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
43.11
33%
-12
- C2 -
1WN4
-
A:
[7-27]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
N
---
H
L
L
E
E
A
L
V
A
F
A
--
K
K
G
N
L
-
G
G
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
41.75
26%
-2
- C2 -
1WN8
-
A:
[3-21]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
S
S
E
T
T
L
T
M
F
L
--
K
E
M
Q
L
-
K
G
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
41.63
12%
24
- C2 -
2JOB
-
?
A:
[71-96]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
---
G
V
A
G
K
T
A
K
D
F
V
--
R
K
A
F
Q
-
K
G
L
I
S
Q
Q
-----
E
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
39.29
8%
-16
- C2 -
3GA8
1
MQSA_ECOLI
A:
[53-69]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
A
F
M
A
Q
V
K
A
F
R
--
A
S
V
N
A
-
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
37.18
11%
5
- C2 -
1J3M
1
?
A:
[4-30]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
R
K
-
T
L
K
---
A
T
L
A
E
A
R
A
Q
V
E
--
A
A
L
K
E
-
E
G
F
G
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------