@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo1623: (2016-03-26 )
MKKTPFIISGIGLLGFIFFMTGVMTGAKWIQRFDHYWNSVIRVGITDTKTTVISYLTDIGGVATICILTAIIIIVFVFMRKVDTAIWFGSIVLIGGALIPSIIKNIVQRPRPTYKLIEQGGFSFPSGHSTGSTVFYGMLAFLLILYVSRSWLRFTIGILALGIVIFVMYSRVYLGVHFPSDVVAGFLIGNAALFSGIGCYFIWNEKLALWANKFKKA
Atome Classification :
(20 SA)
-------------------.........10..-......20....-....30........----------------40......-..50.....----------...--60........70.....-------...80--------....------------.....90-------.........100.-------.-..-.--..110...---------.---------------------------...-120--........-130.......140.....-..----------150------------------------------------...---......160.-.....-.170---------.......----------..------180.......190----..-.....-200.......210.....----------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------MKKT
P
F
I
I
S
G
I
G
L
-
L
G
F
I
F
F
M
T
G
V
M
T
-
G
A
K
W
I
Q
R
F
D
H
Y
W
N
S
----------------
V
I
R
VGITD-
T
K
T
T
V
I
S
Y
L
----------
T
DI--G
G
V
A
T
I
C
I
L
T
A
I
I
I
I
V
F
-------
V
F
M
R
---------
K
V
D
T
------------
A
I
WF
G
S
--------
I
V
LI
G
G
A
L
I
P
S
I
I
-------
K
-
N
I
-
V
--QRPR
P
T
Y
K
---------
L
---------------------------
I
E
Q-GG---FSFPSGHS-T
G
S
T
V
F
Y
G
M
L
A
F
L
L
I
L
Y
V
-S
R
----------
S
--------------------------------------
W
L
R
---
F
T
I
G
I
L
A
L
G
I
-
V
I
F
V
M
-
Y
S
-----------
R
V
Y
L
G
V
H----------F
P
------
S
D
V
V
A
G
F
L
IG
N
A
A
----
L
F-SG
I
G
C
-
Y
F
I
WN
E
K
L
A
L
W
A
N
K
FKKA----------------------------------------------------------
29
Fugue
77.60
18%
-143
- C3 -
4LEU
-
PP266_ARATH
A:
[71-252]
----------------KLI
G
K
E
A
L
F
V
I
L
G
L
K
R
-
L
-------------
K
E
D
D
E
K
L
D
K
F
I
K
T
----------------
H
V
F
R
L
L
K
L
-
D
M
L
A
V
I
G
E
L
----------
E
R
Q
--
E
E
-------
T
A
L
A
I
K
M
F
-------
E
V
I
Q
---------
K
Q
E
---------------
W
Y
Q
P
--------
D
V
F
M
Y
K
D
L
I
V
S
L
A
-------
K
S
K
R
-
M
--
D
E
A
M
A
L
W
E
---------
K
---------------------------
M
K
K
-
E
N
---
L
-
F
P
D
---------------
S
Q
T
Y
T
E
V
-
I
R
----------
G
--------------------------------------
F
L
R
---
D
G
C
P
A
D
A
M
N
V
-
Y
E
D
M
L
-
K
S
-----------
P
D
P
P
E
-
E
----------
L
P
------
F
R
V
L
L
K
G
L
L
P
H
P
L
----
L
R
-
N
K
V
K
K
-
D
F
E
E
L
F
P
E
K
H
A
Y
D
P
P
E
E
-----------------------------------------------------------
28
Fugue
73.06
18%
-135
- C6 -
4PX7
2
?
A:
[1-258]
---------------GR
S
I
A
R
R
T
A
V
G
A
A
L
L
L
V
M
P
V
A
V
W
I
S
G
W
R
W
Q
-
P
G
S
W
L
L
K
A
A
F
W
V
T
E
----------------
T
V
T
Q
P
W
G
V
I
T
H
L
I
L
F
G
W
F
----------
L
W
C
L
R
F
R
I
K
A
A
F
V
L
F
A
I
L
A
A
A
I
-------
L
V
G
Q
---------
G
V
K
S
W
IKDKVQEPR
P
F
V
I
W
L
E
K
T
H
HMP
V
D
K
F
Y
T
L
K
R
A
E
R
G
N
L
V
-------
K
-
E
Q
-
L
--
A
E
P
Q
Y
L
R
S
---------
H
---------------------------
W
Q
K
E
T
G
---
F
A
F
P
S
G
H
T
M
F
--
A
A
S
W
A
L
L
A
V
G
L
L
W
P
R
-
R
R
----------
T
--------------------------------------
L
T
I
---
A
I
L
L
V
W
A
T
G
V
M
G
------
S
-----------
R
L
L
L
G
M
H
----------
W
P
------
R
D
L
V
V
A
T
L
I
S
W
A
L
----
V
A
-
V
A
T
W
L
-
A
Q
R
I
C
G
P
L
T
P
P
E
E
N
R
E
I
A
Q
R
E
Q
E
S
L
EHH------------------------------------------------
27
Fugue
71.03
14%
-121
- C6 -
1D2T
1
?
A:
[7-230]
--------------GNDTT
T
K
P
D
L
Y
Y
L
K
N
S
E
A
-
I
N
S
L
A
L
L
P
P
P
P
A
-
V
G
S
I
A
F
L
N
D
Q
A
M
Y
E
----------------
Q
G
R
L
L
R
N
T
-
E
R
G
K
L
A
A
E
D
----------
A
N
L
--
S
S
G
G
V
A
N
A
F
S
G
A
F
G
S
P
I
-------
T
E
K
D
---------
A
P
A
L
------------
H
K
L
L
T
N
--------
M
I
E
D
A
G
D
L
A
T
R
S
A
-------
K
-
D
H
-
Y
--
M
R
I
R
P
F
A
F
Y
GVSTCNTQ
D
---------------------------
K
L
S
-
K
N
---
G
S
Y
P
S
G
H
T
-
S
I
G
W
A
T
A
L
V
L
A
E
I
N
--------------------------------------------------------------
P
Q
R
Q
N
E
I
L
K
R
-
G
Y
E
L
G
-
Q
S
-----------
R
V
I
C
G
Y
H
----------
W
Q
------
S
D
V
D
A
A
R
V
V
G
S
A
V
----
V
A
-
T
L
H
T
N
-
P
A
F
Q
Q
Q
L
Q
K
A
K
A
E
F
A
Q
H
Q
K---------------------------------------------------------
35
Fugue
68.04
15%
-151
* C4 *
3C24
4
?
A:
[6-285]
----------------KND
V
G
P
K
T
V
A
I
L
G
A
G
------------
G
K
M
G
A
R
I
T
R
K
I
H
D
---
S
----------------
A
H
H
L
A
A
I
E
-
I
A
P
E
G
R
D
R
L
Q
G
M
G
I
P
L
T
D
G
D
G
W
--
I
D
E
A
D
V
V
V
L
A
L
P
D
N
I
I
E
-------
K
V
A
E
---------
D
I
V
P
------------
R
V
R
P
G
T
--------
I
V
L
I
L
D
A
A
A
P
Y
A
----------
G
V
M
P
--
E
R
A
D
I
T
Y
F
---------
I
---------------------------
G
H
P
-
C
H
PPL
F
N
D
E
T
D
P
A
-
A
R
T
D
Y
H
G
G
I
A
K
Q
A
I
V
C
A
L
M
Q
G
----------
P
--------------------------------------
E
--------
E
H
Y
A
I
G
A
-
D
I
C
E
T
M
W
S
-----------
P
V
T
R
T
H
R
----------
V
T
------
T
E
Q
L
A
I
L
E
P
G
L
S
E
M---
V
A
M
P
F
V
E
T
M
V
H
A
V
D
E
C
A
D
R
Y
G
I
D
R
Q
A
A
L
D
F
M
I
G
H
L
N
V
E
I
A
M
W
F
GYSPKVAALRL
M
E
F
A
K
D
I
VVKEDWREALN
P
A
K
V
K
Q
A
A
E
L
I
A
G
22
HHSearch
63.05
20%
-73
- C6 -
1QI9
4
PRXV_ASCNO
A:
[391-513]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
P
N
N
-------
E
-
V
T
-
Y
--
L
L
P
Q
A
I
Q
E
-------------------------------------
G
S
P
-
T
H
---
P
S
Y
P
S
G
H
A
-
T
Q
N
G
A
F
A
T
V
L
K
A
L
I
G
L
D
R
-
G
G
DCYPD
P
V
Y
P
D
D
DGL
K
L
I
D
F
R
-----------------------------
G
S
C
---
L
T
F
E
G
E
I
N
K
L
-
A
V
N
V
A
-
F
G
-----------
R
Q
M
L
G
I
H
----------
Y
R
------
F
D
G
I
Q
G
L
L
L
G
E
T
I
----
T
V
-
R
T
L
H
Q
--
E
L
M
T
F
----------------------------------------------------------------------
31
Fugue
62.43
9%
-162
- C4 -
3GAA
-
?
A:
[4-246]
MIMVNKKAS
E
S
Q
V
M
ELEKR
N
Y
N
N
P
V
V
L
C
G
F
A
G
-
S
T
P
T
G
V
L
A
A
S
Y
I
-
V
E
T
L
G
M
H
Q
V
A
H
L
I
S
QHIPPVAVFVGG
K
L
R
H
P
F
R
I
Y
A
N
N
-
S
N
T
V
L
V
-
A
M
----------
C
E
V
--
P
I
S
S
A
H
I
Y
E
I
S
N
T
L
M
N
W
-------
I
D
Q
V
---------
G
A
S
E
------------
I
V
I
M
E
G
--------
S
P
A
N
G
---
I
P
E
E
R
-------
P
-
V
F
-
A
--
V
A
E
K
P
K
L
D
---------
K
---------------------------
F
K
K
-
A
G
---
I
Q
P
A
D
S
A
I
-
I
A
-----
G
M
G
G
G
I
L
N
E
C
L
-
V
R
---------------------------------------------------------------
K
I
-
T
G
L
S
F
-
I
T
-----------
P
T
S
V
--
D
----------
I
P
------
D
P
G
A
V
L
S
I
I
E
A
I
N
----
K
A
-
Y
N
L
K
----
I
K
T
D
L
L
E
E
Q
V
K
A
L
D
E
Q
I
K
K
I
E
E
Q
Y
K
E
L
Q
E
K
QKE-----------------------------------------
23
HHSearch
57.36
19%
-55
- C6 -
3BB0
1
PRXC_CURIN
A:
[340-513]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
--------
A
C
T
-
D
A
G
I
F
S
W
K
E
-------
K
-
W
E
-
F
--
E
F
W
R
P
L
S
G
---------
V
R
D
DGRPDHGDPFWLTLGAPATNTNDIP
F
K
P
-
P
F
---
P
A
Y
P
S
G
H
A
-
T
F
G
G
A
V
F
Q
M
V
R
R
Y
Y
N
G
R
V
-
G
T
W
K
DDEP----
D
NIAIDMMISEELNGVNRDLRQPYDPTAPIEDQPGIVR
T
R
I
V
---
R
-
H
F
D
S
A
W
E
L
-
M
F
E
N
A
-
I
S
-----------
R
I
F
L
G
V
H
----------
W
R
------
F
D
A
A
A
A
R
D
I
L
I
P
T
----
T
T
-----------------------------------------------------------------------------------
21
HHSearch
56.77
25%
-69
- C6 -
1D2T
1
?
A:
[109-214]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
T
R
S
A
-------
K
-
D
H
-
Y
--
M
R
I
R
P
F
A
F
Y
GVSTCNTQ
D
---------------------------
K
L
S
-
K
N
---
G
S
Y
P
S
G
H
T
-
S
I
G
W
A
T
A
L
V
L
A
E
I
N
P
Q
R
Q
--------------------------------------------------------------
N
E
I
L
K
R
-
G
Y
E
L
G
-
Q
S
-----------
R
V
I
C
G
Y
H
----------
W
Q
------
S
D
V
D
A
A
R
V
V
G
S
A
V
----
V
A
-
T
L
H
T
N
--
P
A
F
------------------------------------------------------------------------
36
Fugue
54.75
12%
-166
- C2 -
1TKI
-
TITIN_HUMAN
A:
[18-338]
---------------KELY
E
K
Y
M
I
A
E
D
L
G
R
G
E
-
F
G
I
V
H
R
C
V
E
T
S
S
-
K
K
T
Y
M
A
K
F
V
K
V
K
G
T
----------------
D
Q
V
L
V
K
K
E
-
I
S
I
L
N
I
A
R
H
----------
R
N
I
--
L
H
L
H
E
S
F
E
S
M
E
E
L
V
M
I
F
E
FISGLD
I
F
E
R
I
N
T
SA
F
E
L
N
E
R
E
I
------------
V
S
Y
V
H
Q
--------
V
C
E
A
L
Q
F
L
H
S
H
N
I
GHFDIRP
E
-
N
I
-
I
YQ
T
R
R
S
S
T
I
K
---------
I
---------------------------
I
E
F
-
G
----
Q
A
R
Q
L
K
P
G
-
D
N
F
R
L
L
F
T
A
P
E
Y
Y
A
P
E
V
H
-
Q
H
----------
D
--------------------------------------
V
V
S
---
T
A
T
D
M
W
S
L
G
T
-
L
V
Y
V
L
-
L
S
GINPFLAET
N
Q
Q
I
I
E
N
I
M
N
AEYTFDEEA
F
K
EIS
I
E
A
M
D
F
V
D
R
L
L
V
K
E
R
K
SRMT
A
S
-
E
A
L
Q
H
-
P
W
L
K
Q
K
I
E
R
V
S
T
K
V
I
R
T
L
K
H
R
R
Y
Y
H
T
L
IKKDLNMVVSAARISCGGAIRSQKG
V
S
V
A
K
V
K
V
A
SI-------------
11
PsiBlast_PDB
52.44
40%
-114
- C5 -
5AVW
1
?
A:
[301-337]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
G
V
A
V
F
L
G
V
S
F
F
I
L
S
L
I
L
-
G
Y
----------
S
--------------------------------------
W
L
E
A
V
I
F
L
I
G
I
I
V
A
N
V
---------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
52.14
40%
-114
- C5 -
5AVX
1
?
A:
[301-337]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
G
V
A
V
F
L
G
V
S
F
F
I
L
S
L
I
L
-
G
Y
----------
S
--------------------------------------
W
L
E
A
V
I
F
L
I
G
I
I
V
A
N
V
---------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
52.12
40%
-114
- C5 -
5AW5
1
?
A:
[301-337]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
G
V
A
V
F
L
G
V
S
F
F
I
L
S
L
I
L
-
G
Y
----------
S
--------------------------------------
W
L
E
A
V
I
F
L
I
G
I
I
V
A
N
V
---------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
52.12
40%
-114
- C5 -
5AW4
1
?
A:
[301-337]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
G
V
A
V
F
L
G
V
S
F
F
I
L
S
L
I
L
-
G
Y
----------
S
--------------------------------------
W
L
E
A
V
I
F
L
I
G
I
I
V
A
N
V
---------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
52.12
40%
-114
* C5 *
5AW1
1
?
A:
[301-337]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
G
V
A
V
F
L
G
V
S
F
F
I
L
S
L
I
L
-
G
Y
----------
S
--------------------------------------
W
L
E
A
V
I
F
L
I
G
I
I
V
A
N
V
---------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
52.12
40%
-114
- C5 -
5AVY
1
?
A:
[301-337]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
G
V
A
V
F
L
G
V
S
F
F
I
L
S
L
I
L
-
G
Y
----------
S
--------------------------------------
W
L
E
A
V
I
F
L
I
G
I
I
V
A
N
V
---------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
52.12
40%
-114
- C5 -
5AVV
1
?
A:
[301-337]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
G
V
A
V
F
L
G
V
S
F
F
I
L
S
L
I
L
-
G
Y
----------
S
--------------------------------------
W
L
E
A
V
I
F
L
I
G
I
I
V
A
N
V
---------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
52.12
40%
-114
- C5 -
5AVR
1
?
A:
[301-337]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
G
V
A
V
F
L
G
V
S
F
F
I
L
S
L
I
L
-
G
Y
----------
S
--------------------------------------
W
L
E
A
V
I
F
L
I
G
I
I
V
A
N
V
---------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
51.92
40%
-114
- C5 -
5AVQ
1
?
A:
[301-337]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
G
V
A
V
F
L
G
V
S
F
F
I
L
S
L
I
L
-
G
Y
----------
S
--------------------------------------
W
L
E
A
V
I
F
L
I
G
I
I
V
A
N
V
---------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
51.90
40%
-114
- C5 -
5AW3
1
?
A:
[301-337]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
G
V
A
V
F
L
G
V
S
F
F
I
L
S
L
I
L
-
G
Y
----------
S
--------------------------------------
W
L
E
A
V
I
F
L
I
G
I
I
V
A
N
V
---------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
51.90
40%
-114
- C5 -
5AW2
1
?
A:
[301-337]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
G
V
A
V
F
L
G
V
S
F
F
I
L
S
L
I
L
-
G
Y
----------
S
--------------------------------------
W
L
E
A
V
I
F
L
I
G
I
I
V
A
N
V
---------------------------------------------------------------------------------------------------------------------------------------------------