@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo2051: (2016-03-31 )
MRKEWKKITAIVLLIIIIAGFFIPVPYYISKPGGTEELAPLVTVDNHPNKKDGSLSLVTIAMGKANIYTYMTAKFLPYHELEKDSEIKYENESDEEYNVRQMQMMNESKNNAIQVAYKAAGQEVKVTYDGVYVLSVKDDVPAADVLHAGDLITEIDGNAFKSSQEFIDYIHSKKVGDTVKINYKHGDKNEQADIKLTAIDKKGTPGIGITLVDDEKITADPTVKIDSEKIGGPSAGLMFSLEIYSRFQKNDLTDGKKIAGTGTIDPDGTVGRIGGIDQKVVAADKSGAKIFFAPNDPITEEMKKSDPSIESNYDTAVKTAKDIDTNMKIVPVKTFQDAVDYLKKLQ
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------.........10.....------------...20........30........-------40....---------------------....50........60..-------......70......-..80..---------......90........100.......110.......120.......130.......140..-.------------------....150.......160.......170.......180..--.....190.......200.--....-....210.......220......----.230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.....
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------M
R
K
E
W
K
K
I
T
A
I
V
L
L
I
I
------------
I
I
A
G
F
FIPV
P
Y
Y
ISKPG
G
T
E
EL
A
-------
P
L
V
T
VD---------------------NHPNKKDG
S
L
S
L
V
T
I
AMG-------K
A
N
I
Y
T
Y
M
T
A
KFL
P
-
Y
H
ELEK---------DSEIKYENESDEEY
N
V
R
Q
M
Q
M
M
NESKN
N
A
I
Q
V
A
Y
KAAG
Q
E
V
K
V
T
YD
G
V
Y
V
L
S
VKDDV
P
A
A
D
-
V
------------------
L
HAGD
L
I
T
EIDGNAFK
S
S
Q
E
F
I
D
Y
I
H
SKKVG
D
T
V
K
I
N
Y
K--HGDKNEQA
D
I
K
L
T
A
ID--K--KGTP-
G
I
G
I
T
L
VDDEKITADP
T
V
K
IDSE----KIGGPSA
G
L
M
F
S
L
E
I
Y
S
R
F
QKNDLTDG
K
K
I
AGTGTIDPDGTVGRIGGID
Q
K
V
V
AADKSG
A
K
I
F
FAPND
P
I
T
E
E
M
KKSDPSIESNYD
T
A
VKTAKDIDTN
M
K
I
V
P
V
K
T
F
Q
D
A
V
D
Y
-
L
K
KLQ
1
PsiBlast_PDB
88.32
98%
-102
- C4 -
3I18
1
?
A:
[2-96]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
K
V
T
Y
D
G
V
Y
V
M
S
V
K
D
D
V
P
A
A
D
-
V
------------------
L
H
A
G
D
L
I
T
E
I
D
G
N
A
F
K
S
S
Q
E
F
I
D
Y
I
H
S
K
K
V
G
D
T
V
K
I
N
Y
K
--
H
G
D
K
N
E
Q
A
D
I
K
L
T
A
I
D
--
K
--
K
G
T
P
-
G
I
G
I
T
L
V
D
D
-----------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
82.84
87%
-100
- C4 -
3I18
1
?
A:
[6-96]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
D
G
V
Y
V
M
S
V
K
D
D
V
P
A
A
D
-
V
------------------
L
H
A
G
D
L
I
T
E
I
D
G
N
A
F
K
S
S
Q
E
F
I
D
Y
I
H
S
K
K
V
G
D
T
V
K
I
N
Y
K
--
H
G
D
K
-
N
E
-
Q
A
D
I
K
L
T
A
ID
K
--
K
G
T
P
-
G
I
G
I
T
L
V
D
D
-----------------------------------------------------------------------------------------------------------------------------------------
43
Fugue
78.60
82%
-81
- C4 -
2KJK
-
?
A:
[1-100]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
K
V
T
Y
D
G
V
Y
V
L
S
V
K
E
D
V
P
A
A
G
-
I
------------------
L
H
A
G
D
L
I
T
E
I
D
G
Q
S
F
K
S
S
Q
E
F
I
D
Y
I
H
S
K
K
V
G
D
T
V
K
I
K
Y
K
--
H
G
N
K
N
E
E
A
S
I
K
L
T
A
I
D
--
K
--
K
G
T
P
-
G
I
G
I
T
L
V
D
D
L
E
H
H
H
H
H
H
---------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
78.14
90%
-82
- C4 -
2KJK
-
?
A:
[2-92]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
K
V
T
Y
D
G
V
Y
V
L
S
V
K
E
D
V
P
A
A
G
-
I
------------------
L
H
A
G
D
L
I
T
E
I
D
G
Q
S
F
K
S
S
Q
E
F
I
D
Y
I
H
S
K
K
V
G
D
T
V
K
I
K
Y
K
--
H
G
N
K
N
E
E
A
S
I
K
L
T
A
I
D
--
K
--
K
G
T
P
-
G
I
G
I
T
L
V
D
D
-----------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
73.08
88%
-91
- C4 -
3I1E
-
?
A:
[2-82]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
G
V
Y
V
L
S
V
K
E
D
V
P
A
A
G
-
I
------------------
L
H
A
G
D
L
I
T
E
I
D
G
Q
S
F
K
S
S
Q
E
F
I
D
Y
I
H
S
K
K
V
G
D
T
V
K
I
K
Y
K
--
H
G
N
K
N
E
E
A
S
I
K
L
T
A
I
D
--
K
--
K
G
T
P
-
G
I
G
I
----------------------------------------------------------------------------------------------------------------------------------------------
49
Fugue
63.17
17%
-41
- C3 -
3M6A
1
LON1_BACSU
A:
[7-531]
TGEVQ
T
L
T
E
K
I
E
EAGMPDHVK
E
T
A
L
K
E
L
N
R
YEKIPSSS
A
E
S
S
V
IRN
Y
I
D
W
L
V
A
LPWTDETD
D
K
L
D
LKE
A
G
R
L
L
D
E
E
HHGL
E
K
V
K
E
R
I
L
E
Y
L
A
V
Q
K
L
T
K
S
L
K
G
P
I
L
C
L
A
G
PPGVG
K
T
S
L
A
K
S
I
A
K
S
L
G
R
K
F
V
R
I
S
L
G
G
R
I
I
Q
G
M
K
K
A
GKLN
P
V
F
L
L
D
EIDKMSAMLEVLDPEQNS
S
F
S
D
H
Y
I
E
E
T
F
D
L
S
K
V
L
F
I
A
T
A
N
NLATI
P
G
P
L
R
D
R
M
E
I
I
N
I
A
G
Y
T
E
I
E
K
L
E
I
V
K
DH
L
L
P
K
Q
I
K
E
H
G
L
K
K
S
N
L
Q
L
R
D
Q
A
I
L
D
I
I
R
Y
Y
T
R
E
A
G
V
R
S
L
E
R
Q
L
A
A
I
C
R
K
A
A
K
A
I
V
A
E
E
R
K
R
I
T
-
V
T
EKNLQDFIGKRIFRYGQ
A
E
T
E
D
Q
V
G
V
V
T
G
L
A
Y
T
T
V
G
G
D
T
L
S
I
E
V
S
L
S
P
G
K
G
K
L
I
L
T
G
K
L
G
D
V
M
R
E
S
A
Q
A
A
F
S
Y
V
--
R
--
S
K
T
E
-
E
L
G
I
E
P
D
F
H
E
K
Y
D
I
H
I
H
V
P
E
G
A
V
----
P
K
D
G
P
A
A
G
I
T
M
A
T
A
L
V
S
A
L
T
G
R
A
V
S
--
R
E
V
G
M
T
G
E
I
T
L
R
G
R
V
L
P
I
G
G
L
K
E
K
A
L
G
A
H
R
A
G
L
T
T
I
I
A
P
-----
K
D
N
E
K
D
I
E
D
I
P
----------
E
S
V
R
E
G
L
T
F
I
L
A
S
H
L
D
E
V
L
E
H
-
A
--
L
V
46
Fugue
57.64
19%
-16
* C3 *
1RR9
-
LON_ECOLI
A:
[10-191]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
V
G
Q
V
T
G
L
A
W
T
E
V
G
G
D
L
L
T
I
E
T
A
C
V
P
G
K
G
K
-
L
T
Y
T
G
S
--
L
G
E
V
M
Q
E
S
I
Q
A
A
L
T
V
V
--
R
--
A
R
A
E
-
K
L
G
I
N
P
D
F
Y
E
K
R
D
I
H
V
H
V
P
E
G
A
T
----
P
K
D
G
P
A
A
G
I
A
M
C
T
A
L
V
S
C
L
T
G
N
P
V
R
A
D
--
V
A
M
T
G
E
I
T
L
R
G
Q
V
L
P
I
G
G
L
K
E
K
L
L
A
A
H
R
G
G
I
K
T
V
L
I
P
---------------
F
E
N
K
R
D
L
E
E
I
P
D
N
V
I
A
D
L
D
I
H
P
V
K
R
I
E
E
V
L
T
L
A
L
Q
N
E
P
29
HHSearch
53.78
25%
-70
- C4 -
3WKM
-
Y1964_AQUAE
A:
[95-178]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
K
P
V
V
G
G
V
K
K
G
S
P
A
D
Q
V
G
------------------
I
K
P
G
D
L
I
L
E
V
N
G
K
K
I
N
T
W
Y
E
L
V
E
E
V
R
K
S
-
Q
G
K
A
I
K
L
K
I
L
--
R
N
G
K
-
M
I
-
E
K
E
L
I
P
A
K
--
D
PK
T
G
T
Y
-
F
I
G
L
F
P
K
-------------------------------------------------------------------------------------------------------------------------------------------
41
HHSearch
53.69
14%
-65
- C4 -
3PV2
-
?
A:
[374-432]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
G
V
Q
V
V
G
A
S
E
N
S
A
G
W
R
A
G
------------------
I
R
P
G
D
I
I
I
S
A
N
K
K
P
V
T
D
V
K
S
L
Q
T
I
A
Q
E
K
--
K
K
E
L
L
V
Q
V
L
--
R
G
P
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
53.43
36%
-52
- C4 -
2KL1
-
?
A:
[6-87]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
V
Y
V
M
S
V
L
P
N
M
P
A
A
G
-
R
------------------
L
E
A
G
D
R
I
A
A
I
D
G
Q
P
I
N
T
S
E
Q
I
V
S
Y
V
R
E
K
Q
A
G
D
R
V
R
V
T
F
I
--
R
D
R
K
Q
H
E
A
E
L
V
L
K
P
F
P
--
H
--
H
P
N
Q
I
G
L
G
V
T
---------------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
50.30
24%
-65
- C4 -
2HGA
-
?
A:
[23-107]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
P
D
G
V
Q
I
D
S
V
V
P
G
S
P
A
S
K
-
V
------------------
L
T
P
G
L
V
I
E
S
I
N
G
M
P
T
S
N
L
T
T
Y
S
A
A
L
K
T
I
S
V
G
E
V
I
N
I
T
T
D
--
Q
G
T
F
----
H
L
K
T
G
R
N
P
--
N
N
-
S
S
R
A
-
Y
M
G
I
R
T
S
N
H
-----------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
50.28
27%
-56
- C4 -
3STJ
1
DEGQ_ECOLI
A:
[263-330]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
G
A
F
V
S
E
V
L
P
G
S
G
S
A
K
A
G
------------------
V
K
A
G
D
I
I
T
S
L
N
G
K
P
L
N
S
F
A
E
L
R
S
R
I
A
T
T
E
P
G
T
K
V
K
L
G
L
L
--
R
N
G
K
-
P
L
-
E
V
E
V
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
50.25
25%
-63
- C3 -
3WU4
-
?
A:
[90-188]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
K
D
G
P
A
A
G
I
A
M
C
T
A
L
V
S
C
L
T
G
N
P
V
R
--
A
D
V
A
M
T
G
E
I
T
L
R
G
Q
V
L
P
I
G
G
L
K
E
K
L
L
A
A
H
R
G
G
I
K
T
V
L
I
P
F
E
N
K
---------------
R
D
L
E
E
I
P
D
N
V
I
A
D
L
D
I
H
P
V
K
R
I
E
E
V
L
T
L
-
A
L
Q
--
25
HHSearch
49.89
19%
-66
- C3 -
3M6A
-
LON1_BACSU
A:
[422-531]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
I
H
I
H
V
P
E
GAV
P
K
D
G
P
A
A
G
I
T
M
A
T
A
L
V
S
A
L
T
G
R
A
V
S
--
R
E
V
G
M
T
G
E
I
T
L
R
G
R
V
L
P
I
G
G
L
K
E
K
A
L
G
A
H
R
A
G
L
T
T
I
I
A
P
K
D
N
E
---------------
K
D
I
E
D
I
P
E
S
V
R
E
G
L
T
F
I
L
A
S
H
L
D
E
V
L
E
H
-
A
L
V
--
23
HHSearch
49.35
33%
-57
- C3 -
1XHK
-
LONB_METJA
A:
[92-186]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
I
D
G
D
S
A
T
A
A
V
C
L
A
I
I
S
A
L
L
D
I
P
L
K
--
Q
D
F
A
I
T
G
S
L
D
L
S
G
N
V
L
A
I
G
G
V
N
E
K
I
E
A
A
K
R
Y
G
F
K
R
V
I
I
P
E
A
N
M
---------------
I
D
V
I
E
-----
T
E
G
I
E
I
I
P
V
K
T
L
D
E
I
V
P
L
-
V
F
D
L
-
36
HHSearch
47.72
37%
-38
- C4 -
2KL1
-
?
A:
[5-71]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
G
V
Y
V
M
S
V
L
P
N
M
P
A
A
G
-
R
------------------
L
E
A
G
D
R
I
A
A
I
D
G
Q
P
I
N
T
S
E
Q
I
V
S
Y
V
R
E
K
Q
A
G
D
R
V
R
V
T
F
I
--
R
D
R
K
-
Q
H
-
E
A
E
L
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
47.58
23%
-67
- C3 -
1Z0W
2
A:
[90-187]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
V
E
G
D
S
A
S
I
S
I
A
T
A
V
I
S
A
I
E
G
I
P
V
D
--
Q
S
V
A
M
T
G
S
L
S
V
K
G
E
V
L
P
V
G
G
V
T
Q
K
I
E
A
A
I
Q
A
G
L
K
K
V
I
I
P
K
D
N
I
---------------
D
D
V
L
-
L
D
A
E
H
E
G
K
I
E
V
I
P
V
S
R
I
N
E
V
L
E
H
-
V
L
E
--
8
PsiBlast_PDB
47.25
29%
-53
- C3 -
1XHK
-
LONB_METJA
A:
[92-180]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
I
D
G
D
S
A
T
A
A
V
C
L
A
I
I
S
A
L
L
--
D
I
P
L
K
Q
D
F
A
I
T
G
S
L
D
L
S
G
N
V
L
A
I
G
G
V
N
E
K
I
E
A
A
K
R
Y
G
F
K
R
V
I
I
P
---------------
E
A
N
M
I
D
V
I
E
T
-----
E
G
I
E
I
I
P
V
K
T
L
D
E
I
V
--------
26
HHSearch
47.08
23%
-61
- C3 -
3K1J
1
?
A:
[480-578]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
----
G
V
E
G
D
A
A
S
I
S
V
A
T
A
V
I
S
A
L
E
G
I
P
I
R
--
Q
D
V
A
M
T
G
S
L
S
V
R
G
E
V
L
P
I
G
G
A
T
P
A
I
E
A
A
I
E
A
G
I
K
M
V
I
I
P
K
S
N
E
---------------
K
D
V
F
-
L
S
K
D
K
A
E
K
I
Q
I
F
P
V
E
T
I
D
E
V
L
E
I
-
A
L
E
--
21
HHSearch
47.04
20%
-64
- C3 -
2X36
-
LONM_HUMAN
A:
[837-948]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
S
H
I
H
L
H
V
P
EGAT
P
K
D
G
P
S
A
G
C
T
I
V
T
A
L
L
S
L
A
M
G
R
P
V
R
--
Q
N
L
A
M
T
G
E
V
S
L
T
G
K
I
L
P
V
G
G
I
K
E
K
T
I
A
A
K
R
A
G
V
T
C
I
V
L
P
A
E
N
K
---------------
K
D
F
Y
D
L
A
A
F
I
T
E
G
L
E
V
H
F
V
E
H
Y
R
E
I
F
D
I
-
A
F
P
--