@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo2240: (2016-04-02 )
LKVDSLSKKIDGKLLLDKITFEVKPGEIIGIVGRNGVGKTTLFRTIMGFYIPDAGDVYLDEPLSKNHQLKQKLFMLQDNLNCWDGYKIPTIKKFYQKTYPLFDGDKFDNLMKQVNLAKDVKFQNYSKGMKGLFGLVLALSIGAEFILLDEPMEGLDIIAQKKIMGILLEEVEKRKLGIIISSHRLADLDPIADYIHILQDNHIEESYHLESLREQAVKIQIAFENKKIPHFLLENGKVINKYGRVYTILFRDMNTELYAAIKKEKPIFMDELAVTLEDLFIYHLEEQGGEKL
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10-.----.----..-....20........30........40........50....--....------60-----.------..-.----.---------------.---..-----.-----70-...-......80---.-........----90........-100------.----.---..---....110.....------.--.-------------120--.-------------.......130.......140.......150.......160.......170...---...--.180.......190.-......200-.-......210...--....220.......230...-------....240.......250....-.....260.......270.......-----280.......290----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LKV
D
S
L
S
K
KID-G----
K
----
L
L
-
L
D
K
I
T
F
E
VKPG
E
I
I
G
I
VGRNGV
G
K
T
T
L
F
R
T
I
M
G
FYIPDAG--DVYL------D------E------PL-S----K---------------
N
---
H
Q
-----
L
-----
K
--
Q
K
L
-
F
M
L
QDNL----N-CWDGYKIP----
T
I
K
K
F
Y
Q
KTY-P-L------F----D---
G
D
---
K
F
D
N
L
M
K
Q
V
N
L
A
------K--D-------------V
K
---
F
-------------
Q
N
Y
S
K
G
M
K
G
L
F
G
L
V
L
A
L
S
IG
A
E
F
I
L
LDEPME
G
L
D
I
I
A
Q
K
K
I
M
G
I
L
L
E
E
V
E
KRK---
L
G
I
--
I
I
SSHRLA
D
L
D
P
I
A
D
-
Y
I
H
I
L
QDNH-I-
E
E
S
Y
H
L
E
S
L
R
EQ--
A
V
K
I
Q
I
A
FENKKI
P
H
F
L
LEN-------
G
K
V
I
N
KYG
R
V
Y
T
I
L
F
--RDM
N
-
T
E
L
Y
A
A
I
KKEKP
I
F
M
D
E
L
A
V
T
L
E
D
L
-----
F
I
Y
H
L
E
E
QGGEKL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
92.26
27%
-98
- C1 -
1VPL
2
?
A:
[18-247]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
K
D
L
R
K
R
I
G
-
K
----
K
----
E
I
-
L
K
G
I
S
F
E
I
E
E
G
E
I
F
G
L
I
G
P
N
G
A
G
K
T
T
T
L
R
I
I
S
T
L
I
K
P
S
S
G
I
V
T
V
F
G
------
K
------
N
------
V
V
-
E
----
E
---------------
P
---
H
E
-----
V
-----
R
--
K
L
I
-
S
Y
L
P
E
E
A
----
G
-
A
Y
R
N
M
Q
G
I
----
E
Y
L
R
F
V
A
G
F
Y
-
A
-
S
------
S
----
S
---
S
E
---
I
E
E
M
V
E
R
A
T
E
I
A
GLGEKI
K
--
D
--------------
R
---
V
-------------
S
T
Y
S
K
G
M
V
R
K
L
L
I
A
R
A
L
M
V
N
P
R
L
A
I
L
D
E
P
T
S
G
L
D
V
L
N
A
R
E
V
R
K
I
-
L
K
Q
A
S
Q
E
G
---
L
T
I
--
L
V
S
S
H
N
M
L
E
V
E
F
L
C
D
-
R
I
A
L
I
H
N
G
T
-
I
-
V
E
T
G
T
V
E
E
L
K
E
R
Y
K
A
Q
N
I
E
E
V
F
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
48
HHSearch
88.57
23%
-113
- C1 -
3FVQ
3
FBPC_NEIG1
A:
[5-235]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
H
I
G
H
L
S
K
S
F
Q
-
N
----
T
----
P
V
-
L
N
D
I
S
L
S
L
D
P
G
E
I
L
F
I
I
G
A
S
G
C
G
K
T
T
L
L
R
C
L
A
G
F
E
Q
P
D
S
G
--
E
I
S
L
------
S
G-----
K
------
T
I
-
F
----
S
KN
T
N
-----------
L
---
P
V
-----
R
-----
E
--
R
R
L
-
G
Y
L
V
Q
E
G
----
V
-
L
F
P
H
L
T
V
Y
----
R
N
I
A
Y
G
L
G
N
G
-
K
-
G
RT
A
---
Q
----
E
---
R
Q
---
R
I
E
A
M
L
E
L
T
G
I
S
------
E
LA
G
-------------
R
Y
---
P
-------------
H
E
L
S
G
G
Q
Q
Q
R
A
A
L
A
R
A
L
A
P
D
P
E
L
I
L
L
D
E
P
F
S
A
L
D
E
Q
L
R
R
Q
I
R
E
D
M
I
A
A
L
R
A
N
G
---
K
S
A
--
V
F
V
S
H
D
R
E
E
A
L
Q
Y
A
D
-
R
I
A
V
M
K
Q
G
R
-
I
-
L
Q
T
A
S
P
H
E
L
Y
R
Q
--
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
42
Fugue
88.06
21%
-97
- C1 -
4F4C
3
PGP1_CAEEL
A:
[4-1306]
N
G
S
L
R
Q
S
L
R
T
L
D
S
F
SLA
P
E
D
V
L
K
T
A
I
K
T
V
E
D
Y
EGDNIDSNG
E
I
K
I
TRDEVV
N
K
V
S
I
P
Q
L
Y
RYTT
T
L
E
K
L
L
L
F
I
G
T
L
V
A
V
I
T
G
A
G
L
P
L
M
S
I
L
Q
G
K
V
S
Q
A
F
I
N
E
Q
I
V
I
N
N
N
G
S
T
F
LPTGQNYT
K
T
D
F
E
H
D
V
M
N
V
V
W
S
Y
A
A
M
T
V
G
M
W
A
A
G
Q
I
T
V
T
C
Y
L
Y
V
A
E
Q
M
N
N
R
L
R
R
E
F
V
K
S
I
L
R
QE
I
S
W
F
D
T
N
HSGT
L
A
T
K
L
F
D
N
L
E
R
V
K
E
G
T
GD
K
I
G
M
A
F
Q
Y
L
S
Q
F
I
T
G
F
I
V
A
F
T
H
S
W
Q
L
T
L
V
M
L
A
V
T
P
I
Q
A
L
C
G
F
A
I
A
K
S
M
S
T
F
A
I
R
E
T
L
R
Y
A
K
A
G
K
V
V
E
E
T
I
S
S
I
R
T
V
V
S
L
NG
L
R
Y
E
L
E
R
Y
S
T
A
V
E
E
A
K
K
A
G
V
L
K
G
L
F
L
G
I
S
F
G
A
M
Q
A
S
N
F
I
S
F
A
L
A
F
Y
I
G
V
G
W
V
H
D
GSLN
F
G
D
M
L
T
T
F
S
S
V
M
M
G
S
M
A
L
G
L
A
G
P
Q
L
A
V
L
G
T
A
Q
G
A
A
S
G
I
Y
E
V
LDRKPVIDSS
S
K
A
G
R
KDMKIK
G
D
I
T
V
E
N
V
H
F
T
Y
P
S
R
P
---
D
----
V
----
P
I
-
L
R
G
M
N
L
R
V
N
A
G
Q
T
V
A
L
V
G
S
S
G
C
G
K
S
T
I
I
S
L
L
L
R
Y
Y
D
V
L
K
G
--
K
I
T
I
------
D
------
G
------
V
D
-
V
----
R
---------------
D
IN
L
E
F
-----
L
-----
R
--
K
N
V
-
A
V
V
S
Q
E
P
----
A
-
L
F
N
----
C
----
T
I
E
E
N
I
S
L
G
K
-
E
-
G
------
I
----
T
---
R
E
---
E
M
V
A
A
C
K
M
A
N
A
E
------
K
--
F
-------------
I
K
---
T
L
PNGYNTLVGDR
G
T
Q
L
S
G
G
Q
K
Q
R
I
A
I
A
R
A
L
V
R
N
P
K
I
L
L
L
D
E
A
T
S
A
L
D
A
-
E
S
E
G
I
V
Q
Q
A
L
D
K
A
A
K
G
R
---
T
T
I
--
I
I
A
-
H
R
L
S
T
I
R
N
A
D
L
-
I
I
S
C
K
N
G
Q
V
-
V
-
E
V
G
D
H
R
A
L
M
A
Q
Q
------------------------------------
G
L
Y
Y
D
L
V
T
--
A
Q
T
F
-
T
D
A
V
D
S
A
A
E
G
E
R
I
G
K
D
A
L
S
R
L
K
Q
E
L
----------
E
E
N
N
A
Q
K
T
N
L
F
E
I
L
Y
H
A
RPH
A
L
S
L
F
I
G
M
S
T
A
T
I
G
G
F
I
Y
P
T
Y
S
V
F
F
T
S
F
M
N
V
F
AGNPADFL
S
Q
G
H
F
W
A
L
M
F
L
V
L
A
A
A
Q
G
I
C
S
F
L
M
T
F
F
M
G
I
A
S
E
S
L
T
R
D
L
R
N
K
L
F
R
N
V
L
S
QHIGFFDSPQNA
S
G
K
I
S
T
R
L
A
T
D
V
P
N
L
R
T
A
I
D
F
R
F
S
T
V
I
T
T
L
V
S
M
V
A
G
I
G
L
A
F
F
Y
G
W
Q
M
A
L
L
I
I
A
I
L
P
I
V
A
F
G
Q
Y
L
R
G
RRFTGKNVKSA
S
E
F
A
D
S
G
K
I
A
I
E
A
I
E
N
V
R
T
V
Q
A
L
AR
E
D
T
F
Y
E
N
F
C
E
K
L
D
I
P
H
K
E
A
I
K
E
A
F
I
Q
G
L
S
Y
G
C
A
S
S
V
L
Y
L
L
N
T
C
A
Y
R
M
G
L
A
L
I
I
TDPPTMQ
P
M
R
V
L
R
V
M
Y
A
I
T
I
S
T
S
TLGFAT
S
Y
F
P
E
Y
A
K
A
T
F
A
G
G
I
I
F
G
M
L
R
KISKIDSLSLAGEKKKLYGK
V
I
F
K
N
V
R
F
A
Y
PERPEIEILK
G
L
S
F
S
V
E
PG
Q
T
L
A
L
V
G
P
S
GCGKST
V
V
A
L
L
E
RFYDTL
G
G
E
I
F
I
DGSEIKTLN
P
E
H
T
R
S
Q
I
A
I
V
S
Q
E
P
T
L
F
DCS
I
A
E
N
I
I
YGLDPSSVT
M
A
Q
V
E
E
A
A
R
L
A
NI
H
N
F
I
A
E
LPEGFETRVGDRGTQLS
G
G
Q
K
Q
R
I
A
I
A
R
A
L
V
R
NPK
I
L
L
L
D
EATSALDT
E
S
E
K
V
V
Q
E
A
L
D
R
A
R
EG
R
T
C
I
V
I
A
HRLNTVMNAD
C
I
A
V
V
S
NGTII
E
K
G
T
H
T
Q
L
M
S
E
K
36
Fugue
87.86
20%
-103
- C1 -
3B60
2
MSBA_SALTY
A:
[10-581]
--------------------------------------------------------------------------------W
Q
T
F
R
R
L
W
P
T
I
A
PFK
A
G
L
I
V
A
G
I
A
L
I
L
N
A
A
S
D
T
F
M
L
S
L
LKPLLDDGFGKTDRSVLLW
M
P
L
V
V
I
G
L
M
I
L
R
G
I
T
S
Y
I
S
S
Y
C
I
S
W
V
S
G
K
V
V
M
T
M
R
R
R
L
F
G
H
M
M
G
MPVAFFDKQS
T
G
T
L
L
S
R
I
T
Y
D
S
E
Q
V
A
S
S
S
S
G
A
L
I
T
V
V
R
E
G
A
S
I
I
G
L
F
I
M
M
FYYS
W
Q
L
S
I
I
L
V
V
L
A
P
I
V
S
I
A
I
R
V
V
S
K
R
F
R
S
I
S
K
N
M
Q
N
T
M
G
Q
V
T
T
S
A
E
Q
M
L
K
G
H
KEVLIFGG
Q
E
V
E
T
K
R
F
D
K
V
S
N
K
M
R
L
Q
G
M
K
M
V
S
A
S
S
I
S
D
P
I
I
Q
L
I
A
S
L
A
L
A
F
V
L
Y
A
A
S
FPSVMDSLT
A
G
T
I
T
V
V
F
S
S
M
I
A
L
M
R
P
L
K
S
L
T
N
V
N
A
Q
F
Q
R
G
M
A
A
C
Q
T
L
F
A
I
L
D
SEQEK
D
E
G
K
RVIDRATGD
L
E
F
R
N
V
T
F
T
Y
P
G
R
-
E
----
V
----
P
A
-
L
R
N
I
N
L
K
I
P
A
G
K
T
V
A
L
V
G
R
S
G
S
G
K
S
T
I
A
S
L
I
T
R
F
Y
D
I
D
E
G
--
H
I
L
M
------
D
------
G
------
H
D
-
L
----
R
---------------
E
YT
L
A
S
-----
L
-----
R
--
N
Q
V
-
A
L
V
S
Q
N
V
----
H
-
L
F
N
D
--------
T
V
A
N
N
I
A
Y
A
R
-
T
E
E
------
Y
----
S
---
R
E
---
Q
I
E
E
A
A
R
M
A
Y
A
M
------
D
--
F
-------------
I
N
---
K
M
DNGLD
T
I
I
G
ENG
V
L
L
S
G
G
Q
R
Q
R
I
A
I
A
R
A
L
L
R
D
S
P
I
L
I
L
D
E
A
T
S
A
L
D
T
E
S
E
R
A
I
Q
A
A
L
D
E
L
Q
K
N
R
-----
T
S
--
L
V
I
A
H
R
L
S
T
I
E
Q
-
A
D
-
E
I
V
V
V
E
D
G
I
-
I
-
V
E
R
G
T
H
S
E
L
L
A
Q
--
H
------------------------------
G
V
Y
A
Q
L
H
K
M
Q
F
--
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
63
HHSearch
87.02
22%
-98
- C1 -
3NH6
2
A:
[54-279]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
E
F
E
N
V
H
F
S
Y
A
D
G
----
R
----
E
T
-
L
Q
D
V
S
F
T
V
M
P
G
Q
T
L
A
L
V
G
P
S
G
A
G
K
S
T
I
L
R
L
L
F
R
F
Y
D
I
S
S
G
--
C
I
R
I
------
D
G-----
Q
------
D
I
-
S
----
Q
VT-------------
Q
---
A
S
-----
L
-----
R
--
S
H
I
-
G
V
V
P
Q
D
T
----
V
-
L
F
N
-
D
T
I
A
----
D
N
I
R
Y
G
R
V
T
A
-
G
-----------------
N
D
---
E
V
E
A
A
A
Q
A
A
G
I
H
------
D
--
A
I
M
A
FPEGYR
T
Q
V
G
E
R
---
G
-------------
L
K
L
S
G
G
E
K
Q
R
V
A
I
A
R
T
I
L
K
A
P
G
I
I
L
L
D
E
A
T
S
A
L
D
T
S
N
E
R
A
I
Q
A
S
L
A
K
V
C
--
A
N
---
R
T
T
--
I
V
V
A
H
R
L
S
T
V
V
-
N
A
D
-
Q
I
L
V
I
K
D
G
C
-
I
-
V
E
R
G
R
H
E
A
L
L
S
R
--
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
86.38
28%
-83
- C1 -
3B5J
1
A:
[14-229]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
P
D
-
S
----
P
----
V
I
-
L
D
N
I
N
L
S
I
K
Q
G
E
V
I
G
I
V
G
R
A
G
S
G
K
S
T
L
T
K
L
I
Q
R
F
Y
I
P
E
N
G
--
Q
V
L
I
------
D
------
G
HDL---
A
L
-
A
----
D
---------------
P
---
N
W
-----
L
-----
R
--
R
Q
V
G
V
V
L
Q
D
N
V
LLNR
S
-
I
I
D
N
I
S
L
A
NPGM
S
V
E
K
V
I
Y
A
A
K
-
L
-
A
------
G
----
A
---
H
D
---
F
I
S
E
L
R
E
G
Y
N
T
I
------
V
--
G
-------------
E
Q
---
G
-------------
A
G
L
S
G
G
Q
R
Q
R
I
A
I
A
R
A
L
V
N
N
P
K
I
L
I
F
D
E
A
T
S
A
L
D
Y
E
S
E
H
V
I
M
R
N
M
H
K
I
C
K
G
R
T
-----
V
--
I
I
I
A
H
R
L
S
T
V
K
N
-
A
D
-
R
I
I
V
M
E
K
G
K
-
I
V
E
Q
G
K
H
K
E
L
L
S
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
58
HHSearch
86.05
24%
-114
- C1 -
3GFO
1
ECFA3_CLOP1
A:
[8-235]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
V
E
E
L
N
Y
N
Y
S
-
D
G---
T
----
H
A
-
L
K
G
I
N
M
N
I
K
R
G
E
V
T
A
I
L
G
G
N
G
V
G
K
S
T
L
F
Q
N
F
N
G
I
L
K
P
S
S
G
--
R
I
L
F
------
D
N-----
K
------
P
I
-
D
----
Y
S
R
K
G
-----------
I
---
M
K
-----
L
-----
R
--
E
S
I
-
G
I
V
F
Q
D
P
----
D
N
Q
L
F
S
A
S
V
Y
----
Q
D
V
S
F
G
A
V
N
M
-
K
-
L
------
P
E
D
E
-
I
---
R
K
---
R
V
D
N
A
L
K
R
T
G
I
E
------
H
LK
D
-------------
K
P
---
T
-------------
H
C
L
S
F
G
Q
K
K
R
V
A
I
A
G
V
L
V
M
E
P
K
V
L
I
L
D
E
P
T
A
G
L
D
P
M
G
V
S
E
I
M
K
L
L
V
E
M
Q
K
E
L
G
---
I
T
I
--
I
I
A
T
H
D
I
D
I
V
P
L
Y
C
D
-
N
V
F
V
M
K
E
G
R
-
V
-
I
L
Q
G
N
P
K
E
V
F
A
E
--
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
86.01
28%
-85
- C1 -
2PMK
1
A:
[14-229]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
P
D
-
S
----
P
----
V
I
-
L
D
N
I
N
L
S
I
K
Q
G
E
V
I
G
I
V
G
R
S
G
S
G
K
S
T
L
T
K
L
I
Q
R
F
Y
I
P
E
N
G
--
Q
V
L
I
------
D
------
G
HDL---
A
L
-
A
----
D
---------------
P
---
N
W
-----
L
-----
R
--
R
Q
V
G
V
V
L
Q
D
N
V
LLNR
S
-
I
I
D
N
I
S
L
A
NPGM
S
V
E
K
V
I
Y
A
A
K
-
L
-
A
------
G
----
A
---
H
D
---
F
I
S
E
L
R
E
G
Y
N
T
I
------
V
--
G
-------------
E
Q
---
G
-------------
A
G
L
S
G
G
Q
R
Q
R
I
A
I
A
R
A
L
V
N
N
P
K
I
L
I
F
D
E
A
T
S
A
L
D
Y
E
S
E
H
V
I
M
R
N
M
H
K
I
C
K
G
R
T
-----
V
--
I
I
I
A
H
R
L
S
T
V
K
N
-
A
D
-
R
I
I
V
M
E
K
G
K
-
I
V
E
Q
G
K
H
K
E
L
L
S
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
61
HHSearch
85.97
20%
-107
- C1 -
1B0U
4
HISP_SALTY
A:
[7-244]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
H
V
I
D
L
H
K
R
Y
G
-
G
----
H
----
E
V
-
L
K
G
V
S
L
Q
A
R
A
G
D
V
I
S
I
I
G
S
S
G
S
G
K
S
T
F
L
R
C
I
N
F
L
E
K
P
S
E
G
--
A
I
I
V
------
N
G-----
Q
------
N
I
-
N
----
L
V
R
D
KDGQLKVAD
K
N
Q
L
---
R
L
-----
L
-----
R
--
T
R
L
-
T
M
V
F
Q
H
F
----
N
-
L
W
S
H
M
T
V
L
----
E
N
V
M
E
A
P
I
Q
V
L
G
-
L
S
K
H
---
D
----
A
---
R
E
---
R
A
L
K
Y
L
A
K
V
G
I
D
------
E
--
R
AQG----------
K
Y
---
P
-------------
V
H
L
S
G
G
Q
Q
Q
R
V
S
I
A
R
A
L
A
M
E
P
D
V
L
L
F
D
E
P
T
S
A
L
D
P
E
L
V
G
E
V
L
R
I
M
Q
Q
L
A
-
E
E
G
---
K
T
M
--
V
V
V
T
H
E
M
G
F
A
R
H
V
S
S
-
H
V
I
F
L
H
Q
G
K
-
I
-
E
E
E
G
D
P
E
Q
V
F
G
N
--
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
85.69
28%
-83
- C1 -
2FGK
2
HLYBP_ECOLX
A:
[18-233]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
P
D
-
S
----
P
----
V
I
-
L
D
N
I
N
L
S
I
K
Q
G
E
V
I
G
I
V
G
R
S
G
S
G
K
S
T
L
T
K
L
I
Q
R
F
Y
I
P
E
N
G
--
Q
V
L
I
------
D
------
G
HDL---
A
L
-
A
----
D
---------------
P
---
N
W
-----
L
-----
R
--
R
Q
V
G
V
V
L
Q
D
N
V
LLNR
S
-
I
I
D
N
I
S
L
A
NPGM
S
V
E
K
V
I
Y
A
A
K
-
L
-
A
------
G
----
A
---
H
D
---
F
I
S
E
L
R
E
G
Y
N
T
I
------
V
--
G
-------------
E
Q
---
G
-------------
A
G
L
S
G
G
Q
R
Q
R
I
A
I
A
R
A
L
V
N
N
P
K
I
L
I
F
D
Q
A
T
S
A
L
D
Y
E
S
E
H
V
I
M
R
N
M
H
K
I
C
K
G
R
T
-----
V
--
I
I
I
A
H
R
L
S
T
V
K
N
-
A
D
-
R
I
I
V
M
E
K
G
K
-
I
V
E
Q
G
K
H
K
E
L
L
S
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
85.26
28%
-83
- C1 -
2FFB
1
A:
[18-233]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
P
D
-
S
----
P
----
V
I
-
L
D
N
I
N
L
S
I
K
Q
G
E
V
I
G
I
V
G
R
S
G
S
G
K
S
T
L
T
K
L
I
Q
R
F
Y
I
P
E
N
G
--
Q
V
L
I
------
D
------
G
HDL---
A
L
-
A
----
D
---------------
P
---
N
W
-----
L
-----
R
--
R
Q
V
G
V
V
L
Q
D
N
V
LLNR
S
-
I
I
D
N
I
S
L
A
NPGM
S
V
E
K
V
I
Y
A
A
K
-
L
-
A
------
G
----
A
---
H
D
---
F
I
S
E
L
R
E
G
Y
N
T
I
------
V
--
G
-------------
E
Q
---
G
-------------
A
G
L
S
G
G
Q
R
Q
R
I
A
I
A
R
A
L
V
N
N
P
K
I
L
I
F
D
Q
A
T
S
A
L
D
Y
E
S
E
H
V
I
M
R
N
M
H
K
I
C
K
G
R
T
-----
V
--
I
I
I
A
H
R
L
S
T
V
K
N
-
A
D
-
R
I
I
V
M
E
K
G
K
-
I
V
E
Q
G
K
H
K
E
L
L
S
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
84.92
25%
-96
- C1 -
4P33
7
LPTB_ECOLI
A:
[3-230]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
A
K
N
L
A
K
A
Y
K
-
G
----
R
----
R
V
-
V
E
D
V
S
L
T
V
N
S
G
E
I
V
G
L
L
G
P
N
G
A
G
K
T
T
T
F
Y
M
V
V
G
I
V
P
R
D
A
G
--
N
I
I
I
------
D
------
D
DDISLL
P
L
-
H
----
A
---------------
R
---
A
R
R
G
I
G
Y
L
-----
P
--
Q
E
A
-
S
I
F
R
-
R
L
----
S
-
V
Y
D
--
N
L
M
----
A
V
L
Q
I
R
D
D
L
S
-
A
-
E
------
Q
----
R
---
E
D
---
R
A
N
E
L
M
E
E
F
H
I
E
HL----
R
--
D
-------------
S
M
---
G
-------------
Q
S
L
S
G
G
E
R
R
R
V
E
I
A
R
A
L
A
A
N
P
K
F
I
L
L
D
Q
P
F
A
G
V
D
P
I
S
V
I
D
I
K
R
I
-
I
E
H
L
R
D
S
G
---
L
G
V
--
L
I
T
D
H
N
V
R
E
T
L
A
V
C
E
-
R
A
Y
I
V
S
Q
G
H
L
I
-
A
H
G
T
P
T
E
I
L
Q
D
E
--
H
V
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
84.90
28%
-85
- C1 -
2FF7
1
A:
[18-233]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
P
D
-
S
----
P
----
V
I
-
L
D
N
I
N
L
S
I
K
Q
G
E
V
I
G
I
V
G
R
S
G
S
G
K
S
T
L
T
K
L
I
Q
R
F
Y
I
P
E
N
G
--
Q
V
L
I
------
D
------
G
HDL---
A
L
-
A
----
D
---------------
P
---
N
W
-----
L
-----
R
--
R
Q
V
G
V
V
L
Q
D
N
V
LLNR
S
-
I
I
D
N
I
S
L
A
NPGM
S
V
E
K
V
I
Y
A
A
K
-
L
-
A
------
G
----
A
---
H
D
---
F
I
S
E
L
R
E
G
Y
N
T
I
------
V
--
G
-------------
E
Q
---
G
-------------
A
G
L
S
G
G
Q
R
Q
R
I
A
I
A
R
A
L
V
N
N
P
K
I
L
I
F
D
E
A
T
S
A
L
D
Y
E
S
E
H
V
I
M
R
N
M
H
K
I
C
K
G
R
T
-----
V
--
I
I
I
A
H
R
L
S
T
V
K
N
-
A
D
-
R
I
I
V
M
E
K
G
K
-
I
V
E
Q
G
K
H
K
E
L
L
S
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
84.87
28%
-82
- C1 -
1MT0
1
A:
[12-227]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
P
D
-
S
----
P
----
V
I
-
L
D
N
I
N
L
S
I
K
Q
G
E
V
I
G
I
V
G
R
S
G
S
G
K
S
T
L
T
K
L
I
Q
R
F
Y
I
P
E
N
G
--
Q
V
L
I
------
D
------
G
HDL---
A
L
-
A
----
D
---------------
P
---
N
W
-----
L
-----
R
--
R
Q
V
G
V
V
L
Q
D
N
V
LLNR
S
-
I
I
D
N
I
S
L
A
NPGM
S
V
E
K
V
I
Y
A
A
K
-
L
-
A
------
G
----
A
---
H
D
---
F
I
S
E
L
R
E
G
Y
N
T
I
------
V
--
G
-------------
E
Q
---
G
-------------
A
G
L
S
G
G
Q
R
Q
R
I
A
I
A
R
A
L
V
N
N
P
K
I
L
I
F
D
E
A
T
S
A
L
D
Y
E
S
E
H
V
I
M
R
N
M
H
K
I
C
K
G
R
T
-----
V
--
I
I
I
A
H
R
L
S
T
V
K
N
-
A
D
-
R
I
I
V
M
E
K
G
K
-
I
V
E
Q
G
K
H
K
E
L
L
S
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
84.33
25%
-115
- C1 -
4RVC
-
?
A:
[4-224]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
V
K
D
L
S
G
G
Y
T
-
A
----
Q
----
N
V
-
L
E
D
V
T
F
V
V
D
R
G
E
M
V
A
L
I
G
L
N
G
A
G
K
S
T
T
I
K
H
I
I
G
L
M
E
P
R
R
G
--
A
I
S
I
NGYRLA
D
------
G
------
P
E
-
T
----
Y
---------------
R
---
R
Q
-----
F
-----
A
Y
I
P
E
T
-
P
V
L
Y
E
E
L
----
T
-
L
E
E
H
L
R
L
A
----
A
M
------
A
Y
-
G
-
L
------
S
----
E
---
A
E
Y
E
R
R
L
P
P
L
L
R
E
F
R
L
E
------
R
--
R
-------------
L
S
---
S
FP-----------
A
H
F
S
K
G
M
K
Q
K
V
M
I
V
C
A
F
L
L
E
P
P
L
Y
I
I
D
E
P
F
L
G
L
D
P
L
A
----
I
H
A
L
L
E
R
M
N
E
Q
K
A
K
G
A
G
I
--
L
L
S
T
H
I
L
A
T
A
E
R
Y
C
D
-
S
F
V
I
L
H
N
G
R
-
V
-
K
A
K
G
T
L
D
D
I
R
R
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
52
HHSearch
83.84
20%
-112
- C1 -
3TUI
1
METN_ECOLI
C:
[25-254]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
K
L
S
N
I
T
K
V
F
H
-
Q
GTRT
I
----
Q
A
-
L
N
N
V
S
L
H
V
P
A
G
Q
I
Y
G
V
I
G
A
S
G
A
G
K
S
T
L
I
R
C
V
N
L
L
E
R
P
T
E
G
--
S
V
L
V
------
D
G-----
Q
------
E
L
-
T
----
T
LSESE----------
L
---
T
K
-----
A
-----
R
--
R
Q
I
-
G
M
I
F
Q
H
F
----
N
-
L
L
S
S
R
T
V
F
----
G
N
V
A
L
P
L
E
L
D
-
N
-
T
------
P
----
K
DEV
K
R
---
R
V
T
E
L
L
S
L
V
G
L
G
------
D
KH
D
-------------
S
Y
---
P
-------------
S
N
L
S
G
G
Q
K
Q
R
V
A
I
A
R
A
L
A
S
N
P
K
V
L
L
C
D
Q
A
T
S
A
L
D
P
A
T
T
R
S
I
L
E
L
L
K
D
I
N
R
R
L
G
---
L
T
I
--
L
L
I
T
H
E
M
D
V
V
K
R
I
C
D
-
C
V
A
V
I
S
N
G
E
-
L
-
I
E
Q
D
T
V
S
E
V
F
S
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
83.80
17%
-105
- C1 -
3TUZ
3
METN_ECOLI
H:
[23-362]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HM
I
K
L
S
N
I
T
K
V
F
H
-
Q
GTRT
I
----
Q
A
-
L
N
N
V
S
L
H
V
P
A
G
Q
I
Y
G
V
I
G
A
S
G
A
G
K
S
T
L
I
R
C
V
N
L
L
E
R
P
T
E
G
--
S
V
L
V
------
D
GQELTT
L
------
S
E
-
S
----
E
---------------
L
---
T
K
-----
A
-----
R
--
R
Q
I
-
G
M
I
F
Q
H
F
----
N
-
L
L
S
S
---
R
----
T
V
F
G
N
V
A
L
P
L
-
E
-
L
DNTPKD
E
----
V
---
K
R
---
R
V
T
E
L
L
S
L
V
G
L
G
DK----
H
--
D
-------------
S
Y
---
P
-------------
S
N
L
S
G
G
Q
K
Q
R
V
A
I
A
R
A
L
A
S
N
P
K
V
L
L
C
D
Q
A
T
S
A
L
D
P
A
T
T
R
S
I
L
E
L
L
K
D
I
N
R
R
L
G
---
L
T
I
--
L
L
I
T
H
E
M
D
V
V
K
R
I
C
D
-
C
V
A
V
I
S
N
G
E
-
L
-
I
E
Q
D
T
V
S
E
V
F
S
H
--
P
K
T
P
L
A
Q
K
F
I
Q
S
T
L
H
L
D
I
P
E
DYQERLQ
A
E
P
F
T
D
C
V
P
M
L
R
L
E
F
TG
Q
S
V
D
-
A
P
L
L
S
E
T
A
R
R
F
N
V
N
N
N
I
I
S
A
Q
M
D
Y
A
GGVKF
G
I
M
L
T
E
M
H
G
T
Q
Q
D
TQAAIAWLQEHHVKVEV-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
83.66
28%
-102
- C1 -
1OXT
-
?
A:
[16-238]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
----
K
----
V
V
A
L
D
N
V
N
I
N
I
E
N
G
E
R
F
G
I
L
G
P
S
G
A
G
K
T
T
F
M
R
I
I
A
G
L
D
V
P
S
T
G
--
E
L
Y
F
------
D
------
D
------
R
L
V
A
----
S
---------------
N
---
G
K
-----
L
IVPPE
D
--
R
K
I
-
G
M
V
---
F
----
Q
-
T
W
A
L
Y
--
P
----
N
L
T
A
F
E
N
I
A
F
-
P
-
L
TNMK--
M
----
S
---
K
E
---
E
I
R
K
R
V
E
E
V
A
K
I
------
L
--
D
-------------
I
H
---
H
VLNHFP-------
R
E
L
S
G
G
Q
Q
Q
R
V
A
L
A
R
A
L
V
K
D
P
S
L
L
L
L
D
E
P
F
S
N
L
D
A
R
M
R
D
S
A
R
A
-
L
V
K
E
V
Q
S
R
----
L
G
V
T
L
L
V
V
S
H
D
P
A
D
I
F
A
I
A
D
-
R
V
G
V
L
V
K
G
K
-
L
-
V
Q
V
G
K
P
E
D
L
Y
D
N
--
P
V
S
I
Q
V
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
60
HHSearch
83.42
18%
-105
- C1 -
2OLJ
4
?
A:
[25-249]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
V
H
Q
L
K
K
S
F
G
-
S
----
L
----
E
V
-
L
K
G
I
N
V
H
I
R
E
G
E
V
V
V
V
I
G
P
S
G
S
G
K
S
T
F
L
R
C
L
N
L
L
E
D
F
D
E
G
--
E
I
I
I
------
D
G-----
I
------
N
L
-
K
AKDT
N
---------------
L
---
N
K
-----
V
-----
R
--
E
E
V
-
G
M
V
F
Q
R
F
----
N
-
L
F
P
H
M
T
V
L
----
N
N
I
T
L
A
P
M
K
V
-
R
-
K
------
W
P
R
E
K
A
---
E
A
---
K
A
M
E
L
L
D
K
V
G
L
K
------
D
KA
H
-------------
A
Y
---
P
-------------
D
S
L
S
G
G
Q
A
Q
R
V
A
I
A
R
A
L
A
M
E
P
K
I
M
L
F
D
E
P
T
S
A
L
D
P
E
M
V
G
E
V
L
S
V
M
K
Q
L
A
-
N
E
G
---
M
T
M
--
V
V
V
T
H
E
M
G
F
A
R
E
V
G
D
-
R
V
L
F
M
D
G
G
Y
-
I
-
I
E
E
G
K
P
E
D
L
F
D
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
83.28
24%
-105
- C1 -
2PJZ
5
?
A:
[1-261]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
I
Q
L
K
N
V
G
I
T
L
S
-
G
----
K
GY
E
R
F
S
-
L
E
N
I
N
L
E
V
-
N
G
E
K
V
I
I
L
G
P
N
G
S
G
K
T
T
L
L
R
A
I
S
G
L
L
-
P
Y
S
G
--
N
I
F
I
------
N
G-----
M
------
E
V
-
R
----
K
---------------
I
---
R
N
-----
Y
-----
I
--
R
Y
S
-
T
N
L
P
E
A
Y
----
E
---
I
G
V
T
V
N
----
D
I
V
Y
L
Y
E
E
L
K
-
G
-
L
-----------
D
---
R
D
---
L
F
L
E
M
L
K
A
L
K
L
G
------
E
--
E
-------------
I
L
RRK
L
-------------
Y
K
L
S
A
G
Q
S
V
L
V
R
T
S
L
A
L
A
S
Q
P
E
I
V
G
L
D
E
P
F
E
N
V
D
----
A
A
R
R
H
V
I
S
R
Y
I
K
E
Y
G
---
K
E
G
--
I
L
V
T
H
E
L
D
M
L
N
L
Y
K
E
Y
K
A
Y
F
L
V
G
N
R
-
L
-
Q
G
P
I
S
V
S
E
L
L
E
S
--
S
I
V
E
G
E
R
--
N
D
A
L
L
V
L
D
I
M
D
-------
K
K
V
S
I
V
K
G
D
L
G
M
K
F
G
--
A
L
G
S
L
N
R
I
Y
G
I
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------