@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo2303: (2016-04-02 )
MGQLFNLPQVEDINYIQTVRAVRKFFKDYLMLRVMAGSRKLPTMTTTYKLTPPNFSNEFHSKVEDAAIHNVDNVHAAQEAVKKYDAILNQLEHIHRKILFEKFIHNLQDITIMLDIPYEERQYKREKRKAVIELATTLGIEVLN
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10...---....---.20........30........40....----------....50-----.....--...60......------------..70........-80..----.....------.90.......-.100.........-110.......120.......130.......140..----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGQLFNLPQVED
I
N
---
Y
I
Q
T
---
V
R
A
V
R
K
F
F
K
D
Y
L
M
L
R
V
MAGSRKL
P
T
M
T
----------
T
T
Y
KLT-----PPNF
S
--
N
E
F
H
S
K
V
E
D
A
A------------IHNV
D
N
V
H
A
A
Q
E
-
A
V
K
K
----
Y
D
A
I
L
------
N
Q
L
E
H
I
H
R
K
I
-
L
F
--
E
K
F
I
H
NLQ
D
-
I
T
I
M
L
DIP
Y
E
E
R
Q
Y
K
R
E
K
R
K
A
V
I
E
L
A
T
T
L
G
I
EVLN----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
53
Fugue
68.77
18%
-57
- C3 -
4J1V
3
MOB1A_HUMAN
A:
[9-180]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
R
Q
A
V
M
L
P
E
G
E
D
L
N
E
W
I
A
V
N
T
---
V
D
F
F
N
Q
I
N
M
L
Y
G
T
I
T
E
F
C
T
E
A
S
C
P
V
M
S
AGPR
Y
E
Y
H
WA
D
P
I
K
C
S
-----
A
P
K
Y
I
--
D
Y
L
M
T
W
V
Q
D
Q
L
D
DETLFPSKIGV
P
F
P
K
N
F
M
S
V
A
K
T
-
I
L
K
R
----
L
F
R
V
Y
------
A
H
I
Y
H
Q
H
F
D
S
-
V
M
Q
L
Q
E
E
A
H
L
N
T
S
-
F
K
H
F
I
F
F
V
Q
E
F
N
L
I
D
R
R
E
L
A
P
L
Q
E
L
I
E
K
L
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
68.47
28%
-81
- C5 -
4KP1
3
LEUC_METJA
A:
[298-383]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
C
------------
P
H
N
V
D
N
V
K
Q
A
R
E
V
A
G
K
P
----
I
D
Q
V
F
I
G
SCTN
G
R
L
E
D
L
R
M
A
I
K
I
I
--
E
K
H
G
G
I
A
D
D
-
V
R
V
V
V
-
T
P
A
S
R
E
E
Y
L
K
A
L
K
E
G
I
I
E
K
F
L
K
Y
G
C
V
V
T
N
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
67.72
28%
-91
- C5 -
4NQY
-
LEUC_METJA
A:
[296-381]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
C
------------
P
H
N
V
D
N
V
K
Q
A
R
E
V
A
G
K
P
----
I
D
Q
V
F
I
G
SCTN
G
R
L
E
D
L
R
M
A
I
K
I
I
--
E
K
H
G
G
I
A
D
D
-
V
R
V
V
V
-
T
P
A
S
R
E
E
Y
L
K
A
L
K
E
G
I
I
E
K
F
L
K
Y
G
C
V
V
T
N
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
47
Fugue
66.10
24%
-53
- C4 -
4L5C
3
?
A:
[24-312]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------K
V
K
V
G
I
I
G
G
SGFDDPNLFKKV
G
V
R
Q
V
T
T
PFGKPS
D
T
L
V
E
G
F
VGD
V
A
C
V
V
L
P
R
H
G
K
G
H
L
I
P
P
-
S
E
V
N
---
Y
R
A
N
---
V
W
A
L
K
D
L
G
C
T
H
I
L
A
T
N
A
C
G
S
L
Q
-----------------
E
D
L
V
-----
P
G
D
F
V
VL
N
Q
F
M
D
K
T
W
G
-----------------------------------------------------
R
E
------
N
T
F
Y
G
S
K
P
D
S
L
K
G
V
L
H
M
P
M
A
E
-
P
F
C
E
R
T
R
Q
I
L
I
Q
A
A
R
N
K
S
I
N
V
Y
D
KKTMDKSACIHP
C
V
H
A
E
G
S
A
V
T
I
NGPRFST
R
C
E
S
F
I
H
K
A
M
GLD
I
V
N
M
TLVP
E
V
S
L
A
R
E
A
G
L
S
Y
A
S
I
A
I
V
TDFDCWKSEEEHVC
V
D
M
V
L
E
Q
F
R
K
S
V
V
H
V
R
E
I
L
L
E
A
V
A
L
I
G
A
E
DW
T
K
T
I
E
A
N
K
A
L
V
M
S
S
RQDL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
46
Fugue
62.02
17%
-42
* C4 *
1HIW
2
POL_HV1N5
A:
[8-122]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
S
G
G
E
L
D
---
K
W
E
K
---
I
R
L
R
P
G
G
K
K
Q
Y
K
L
K
H
I
V
W
A
S
R
E
L
E
R
--------------
F
A
V
N
-----
P
G
L
L
E
--
T
--
S
E
G
C
R
Q
I
L
------------
G
Q
L
Q
P
S
L
Q
T
G
S
E
-
E
L
R
S
----
L
Y
N
T
I
------
A
V
L
Y
C
V
H
Q
R
I
----------
D
V
K
D
-
T
K
E
A
L
D
K
I
E
E
E
Q
N
--
K
S
K
K
K
A
Q
Q
A
A
A
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
56.37
23%
-42
- C5 -
3HUG
1
SIGL_MYCTU
A:
[27-86]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
R
L
L
----
I
A
D
A
L
------
A
Q
L
S
A
E
H
R
A
V
-
I
Q
--
R
S
Y
Y
R
G
W
S
T
-
A
Q
I
A
T
D
L
G
I
A
E
G
T
V
K
S
R
L
H
Y
A
V
R
A
L
R
L
T
L
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
Fugue
55.99
15%
-48
- C4 -
1HIW
2
POL_HV1N5
A:
[8-122]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
S
G
G
E
L
D
K
W
E
---
K
I
R
L
---
R
P
G
G
K
K
Q
Y
K
---
L
K
H
I
V
W
A
S
R
E
L
E
R
F
A
----------
V
N
P
G
L
L
-----
E
---
T
--
S
E
G
C
R
Q
I
L
G
Q
L
------------
Q
P
S
L
Q
T
---
G
S
E
-
E
L
R
S
----
L
Y
N
T
I
------
A
V
L
Y
C
V
H
Q
R
I
----------
D
V
K
D
-
T
K
E
A
L
D
K
I
E
E
E
Q
N
K
S
K
K
K
A
Q
Q
A
A
A
D
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
48.87
36%
-41
- C5 -
4K0R
-
CRY1_MOUSE
A:
[96-142]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
I
E
Y
D
S
E
P
F
G
K
E
R
D
A
A
I
K
K
L
A
T
E
A
G
V
E
V
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
48.21
15%
-32
- C5 -
1RP3
-
?
A:
[174-233]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
E
K
----
V
K
E
A
V
------
S
K
L
P
E
R
E
K
L
V
-
I
Q
--
L
I
F
Y
E
E
L
P
A
-
K
E
V
A
K
I
L
E
T
S
V
S
R
V
S
Q
L
K
A
K
A
L
E
R
L
R
E
M
L
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
47.37
29%
-35
- C5 -
3U3W
1
?
A:
[161-221]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
A
N
I
Y
A
E
N
G
-
Y
L
K
K
G
I
D
L
F
E
Q
I
L
------
K
Q
L
E
A
L
H
D
N
E
-
E
F
--
D
V
K
V
R
Y
N
H
A
-
K
A
L
Y
L
D
S
R
Y
E
E
S
L
Y
Q
V
N
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
47.17
36%
-51
- C5 -
4CT0
2
CRY1_MOUSE
A:
[96-133]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
I
E
Y
D
S
E
P
F
G
K
E
R
D
A
A
I
K
K
L
A
T
E
A
G
V
E
V
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
46.96
29%
-31
- C5 -
2QFC
2
?
A:
[161-221]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
A
N
I
Y
A
E
N
G
-
Y
L
K
K
G
I
D
L
F
E
Q
I
L
------
K
Q
L
E
A
L
H
D
N
E
-
E
F
--
D
V
K
V
R
Y
N
H
A
-
K
A
L
Y
L
D
S
R
Y
E
E
S
L
Y
Q
V
N
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
41
HHSearch
45.24
14%
-81
- C5 -
2RNJ
-
VRAR_STAAM
A:
[143-193]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
Y
------
E
M
L
T
E
R
E
M
E
I
-
L
L
--
L
-
I
A
K
G
Y
S
N
-
Q
E
I
A
S
A
S
H
I
T
I
K
T
V
K
T
H
V
S
N
I
L
S
K
L
E
V
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
51
Fugue
45.21
16%
-58
- C2 -
4QOY
-
?
C:
[5-886]
PNDVD
P
I
E
T
R
D
W
L
Q
A
I
E
S
V
I
R
E
EG
V
E
R
A
Q
Y
L
I
D
Q
L
L
A
E
A
R
KGGVNVAAGTGISNYINTIPVEEQPEYPGN
L
E
L
E
R
R
I
R
S
A
I
R
W
N
A
I
M
T
V
L
R
A
S
K
K
DLEL
G
G
H
M
A
S
F
Q
S
S
A
T
I
Y
D
V
C
F
N
HFFRARNEQDGGDLVYFQGHI
S
P
G
V
Y
A
R
A
F
L
E
GRLT
Q
E
Q
L
D
N
FRQEVHGNGLSSYPHPKLMPEFWQFPTVSMG
L
G
P
I
G
A
I
Y
Q
A
K
F
L
K
Y
L
E
H
R
GLKDTSK
Q
T
V
Y
A
F
L
G
D
G
E
M
D
EPESKGA
I
T
I
A
T
R
E
KLDN
L
V
F
V
I
N
C
NLQRLDGPVTGNGK
I
I
N
E
L
E
G
I
F
E
G
A
G
W
N
V
I
K
VMWGSRW
D
E
L
L
R
K
DTSG
K
L
I
Q
L
M
N
E
T
V
D
G
D
Y
Q
---
T
F
K
S
K
D
G
A
Y
V
R
E
H
F
F
G
K
Y
--------------------------------------------
P
E
T
A
A
L
V
A
D
W
T
------------
D
E
Q
I
W
A
L
N
R
G
G
H
-
D
P
K
K
----
I
Y
A
A
F
------
K
K
A
Q
E
T
K
G
K
A
-
T
V
---
I
L
A
H
T
I
K
G
-
Y
G
--
M
G
D
A
A
I
A
H
Q
V
K
K
M
N
M
D
G
V
R
H
I
R
D
R
F
N
V
P
V
S
D
ADIEKL
P
Y
I
T
F
P
EGS
E
E
H
T
Y
L
H
A
Q
R
Q
K
L
HGYLPSRQPNFTEKLELPSLQDF
G
A
L
L
E
EQS
K
E
I
S
T
T
I
A
F
V
R
A
L
N
V
M
L
K
NKSIKDR
L
V
P
I
I
ADEARTFGM
E
G
L
F
R
Q
IGIYSPNGKEDEKGQILQEGIN
E
L
G
A
G
C
S
W
L
A
A
A
T
SYSTNN
L
P
M
I
P
F
Y
I
Y
YSMFGFQRI
G
D
L
C
W
A
A
G
D
Q
Q
A
R
G
F
L
I
GGTSGRTTLNGEGLQHEDGH
S
H
I
Q
S
L
T
IPN
C
I
S
Y
D
P
AY
A
Y
E
V
A
V
I
M
H
D
G
L
E
R
M
YGEKQEN
V
Y
Y
Y
I
T
T
L
NEN
Y
H
M
P
A
M
PEGA
E
E
G
I
R
K
GIYKL
E
T
I
E
G
SK
G
K
V
Q
L
L
G
S
G
SI
L
R
H
V
R
E
A
A
E
I
L
A
KDYG
V
G
S
D
V
Y
S
V
TS
F
T
E
L
A
R
D
G
Q
D
C
E
R
W
N
M
L
H
PLET
P
R
V
P
Y
I
A
Q
V
M
ND
A
P
A
V
A
S
T
DYM
K
L
F
A
E
Q
VRTYVPAD
D
Y
R
V
L
GTD
G
F
G
R
S
D
S
R
E
N
L
R
H
H
F
EVD
A
S
Y
V
V
V
A
A
L
G
E
L
A
K
R
GEID
K
K
V
V
A
D
A
I
A
K
F
NIDADKVNPRLA
39
HHSearch
43.84
16%
-60
- C5 -
1X3U
-
FIXJ_RHIME
A:
[132-186]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
N
D
----
I
R
A
R
L
------
Q
T
L
S
E
R
E
R
Q
V
-
L
S
--
A
-
V
V
A
G
L
P
N
-
K
S
I
A
Y
D
L
D
I
S
P
R
T
V
E
V
H
R
A
N
V
M
A
K
M
K
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
43.27
7%
-59
- C5 -
3MZY
-
?
A:
[139-197]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
E
E
----
F
K
K
F
S
E
-----
N
N
F
S
K
F
E
K
E
V
-
L
T
---
Y
L
I
R
G
Y
S
Y
-
R
E
I
A
T
I
L
S
K
N
L
K
S
I
D
N
T
I
Q
R
I
R
K
K
S
E
E
W
I
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
HHSearch
41.95
7%
-21
- C5 -
1S7O
-
Y1201_STRP1 (first)
A:
[13-71]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
L
----
F
E
F
Y
A
------
A
L
L
T
D
K
Q
M
N
Y
-
I
E
--
L
Y
Y
A
D
D
Y
S
L
-
A
E
I
A
D
E
F
G
V
S
R
Q
A
V
Y
D
N
I
K
R
T
E
K
I
L
E
T
Y
E
M
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
41.62
14%
-44
- C5 -
2Q1Z
-
RPOE_RHOS4
A:
[125-183]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
N
A
R
----
L
G
R
A
I
------
A
R
L
P
E
A
Q
R
A
L
-
I
E
--
R
A
F
F
G
D
L
T
H
-
R
E
L
A
A
E
T
G
L
P
L
G
T
I
K
S
R
I
R
L
A
L
D
R
L
R
Q
H
M
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
41.57
8%
-40
- C5 -
1OR7
-
RPOE_ECOLI
A:
[127-187]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
R
Q
I
----
V
F
R
T
I
------
E
S
L
P
E
D
L
R
M
A
-
I
T
--
L
R
E
L
D
G
L
S
Y
-
E
E
I
A
A
I
M
D
C
P
V
G
T
V
R
S
R
I
F
R
A
R
E
A
I
D
N
K
V
Q
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
41.49
29%
-5
- C5 -
4D61
-
?
T:
[6-63]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
K
D
V
N
---
Q
Q
E
F
---
V
R
A
L
A
A
F
L
K
K
-------
S
G
K
L
K
V
P
E
W
V
----------
D
T
V
K
L
A
KHKEL
A
P
Y
D
E
--
N
W
F
Y
T
R
A
A
S
T
A
------------
R
H
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------