@TOME V2.3
(Nov 2016)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo2379: (2016-04-03 )
MMKTNDVLLRNVTKVVAFIIFLFSLHLFFAGHYNPGGGFVAGLTTAGAITLTLLAYDTKTVASMLNINTIMLTGVGLVFALGTGMIGIFTGDPFLTHKFGHVDLPILGDTALHTATLFDLGVYLVVVGVTLTIIQTIGESD
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------.........10........20.-...-....30------...-..----.--.------.40..-......50....--------.---...60.......------.-70.-....-----...80------.......-.90-.......------..100-------..-....-...110.....-------..120-------------...-....-.---------130.......140-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------MMK
T
N
D
V
L
L
R
N
V
T
K
V
V
A
F
I
I
F
L
-
F
S
L
-
H
L
F
FAG------HYN-PG----G--
G
------
F
V
A
GL-TTA
G
A
I
T
L
T
L
L
A--------Y---
D
T
K
T
V
A
S
M
LN
I
N
------
T
-
I
M
L
-T
G
V
G
-----
L
V
F
A
L------GT
G
M
I
G
I
-FT--GDPF
L
T
H------KFG---------HV-DLPI-LGDTA
L
H
T
A
T
L
-------
F
D
L
G
--------------
V
Y
L
-
V
V
V
G
-
V
---------
T
L
T
I
I
Q
T
IGESD------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
Fugue
82.39
20%
-143
* C7 *
2B2A
-
TERT_TETTH
A:
[13-191]
---------------------------------------------------------------------------------------------------------------------------
M
L
T
R
K
E
D
L
L
T
V
L
K
Q
I
S
A
L
K
-
Y
V
-
S
N
L
-
Y
E
F
L
L
A
------
T
E
K
-
I
V
----
Q
--
T
------
S
E
L
D
T
-
Q
F
Q
E
F
L
T
T
T
I
I
A
S
EQNLVEN
Y
---
K
Q
M
T
I
K
Q
V
I
D
D
S
------
I
-
I
L
L
G
N
K
Q
N
-----
Y
V
Q
Q
I
------
G
T
T
T
I
G
F
-
Y
V
EY
R
Q
T
L
Y
S
S
------
N
F
R
---------
N
L
--
L
N
I
-
F
G
E
E
D
F
K
Y
F
L
I
D
F
L
V
F
T
K
V
E
Q
N
--------------
G
Y
L
-
Q
V
A
G
-
V
---------
C
L
N
Q
Y
F
S
V
Q
V
K
Q
KKWYKNN-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
45
Fugue
75.08
15%
-164
- C6 -
4WZG
1
ATGA1_HUMAN
A:
[1-210]
---------------------------------------------------------------------------------------------------------------------------
M
N
C
R
S
E
V
L
E
V
S
V
E
G
R
Q
V
E
E
A
M
L
-
A
V
L
-
H
T
V
L
L
H
R
ST
G
K
F
H
Y
K
-
K
E
----
G
--
T
------
Y
S
I
G
T
-
V
G
T
Q
D
V
D
C
D
F
I
D
--------
F
---
T
Y
V
R
V
S
S
E
E
L
D
R
------
A
-
L
R
K
-
V
V
G
E
-----
F
K
D
A
L
R
N
SGGD
G
L
G
Q
M
S
L
E
F
Y
--
Q
K
K
K
S
R
W
------
P
F
S
D
E
C
I
P
W
E
V
W
T
V
-
K
V
H
V
-
V
A
L
A
T
E
Q
E
R
Q
I
-------
C
R
E
K
--------------
V
G
E
-
K
L
C
E
-
K
---------
I
I
N
I
V
E
V
M
N
R
H
E
YLPKMPTQSEVDNVFDTGLRDVQPY
L
Y
K
I
S
F
Q
I
T
D
AL
G
T
S
V
T
T
T
M
R
R-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
48
Fugue
72.30
27%
-60
- C6 -
4NNB
2
?
A:
[4-527]
T
S
L
Y
I
T
A
A
P
I
GA
V
P
K
F
L
DPFEATFIP
S
F
L
L
E
GFFD
A
D
R
C
A
S
I
A
A
D
L
K
T
D
G
W
E
V
V
P
A
G
G
R
L
L
Q
V
GHAQPIAHFP
K
P
W
L
A
A
L
S
N
K
L
A
R
R
I
V
L
Q
L
T
T
Y
G
W
I
V
S
EQG
D
L
L
W
EHE
R
Q
H
H
Y
L
P
P
A
L
I
E
A
I
E
K
E
S
P
A
L
L
K
N
M
E
E
A
---------
G
W
-
I
A
C
A
A
G
------
Y
W
Q
-
A
G
----
K
--
A
------
R
S
P
Y
L
-
P
------
I
T
P
E
A
--------
I
---
T
E
E
T
I
R
S
M
R
A
----------------------------------
G
A
A
V
V
H
L
-
H
T
--
R
D
-------------------------------
L
S
D
R
--
R
R
I
E
I
-------
P
G
L
G
----------------
V
-
V
T
V
G
-------------
S
Q
R
N
Q
I
V
L
D
D
Y
D
A
I
V
P
M
V
K
K
R
EPA
A
I
L
N
L
S
TSVRGDRHGARSKLRRAHLKFYDDVGSAPE
V
A
S
L
S
P
A
A
V
V
F
QG
G
G
G
Y
D
NA
P
D
F
L
D
A
Q
F
D
H
F
E
R
V
GTRPEVEVFN
H
A
I
V
D
N
A
T
SLY
R
D
R
L
L
R
T
GKP
V
L
F
M
L
VAG
V
D
Q
Y
R
R
DPITGEVEDDSLIA
R
V
V
R
E
E
I
S
S
L
L
A
D
ES
A
D
S
H
R
R
A
V
E
L
A
I
G
Q
L
R
P
V
V
E
R
L
R
A
S
F
PV
S
K
I
S
I
L
L
P
GPMQNLL
V
D
V
A
L
G
L
GLD
G
I
R
V
G
LEDGL
T
V
N
D
ARVPGG
V
R
K
A
RG
T
W
E
Q
V
S
L
V
R
E
E
L
L
G
R
G
A
T
I
L
T
A
A
Q
V
R
D
M
F
GLGI
41
Fugue
68.58
20%
-152
- C6 -
2G3V
1
CAGS_HELPY
A:
[22-182]
-----------------------------------------------------------------------------------------------------------------------KLIE
S
L
Q
E
N
E
L
L
N
---
T
D
E
K
K
K
I
I
D
Q
-
I
K
T
M
H
D
F
F
K
Q
M
-----
H
T
N
-
K
G
----
A
L
D
K
------
V
L
R
N
Y
M
K
D
Y
R
A
V
I
K
S
I
G
V
--------
D
---
K
F
K
K
V
Y
R
L
L
E
S
E
------
T
M
E
L
L
-
H
A
I
A
E
N
PNF
L
F
S
K
F
------
D
R
S
I
L
G
I
-
F
----
L
P
F
F
S
K
------
P
I
-
M
--------
F
K
M
S
I
R
E
M
D
S
Q
I
E
L
Y
G
T
K
L
-------
P
L
L
K
--------------
L
F
V
M
T
D
E
E
M
N
---------
F
Y
A
N
L
K
T
I
E
Q
Y
N
D
Y
V
R
D
L------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
42
Fugue
67.36
15%
-147
- C6 -
3F13
-
?
A:
[11-156]
---------------------------------------------------------------------------------------------------------------------------------
R
L
P
S
D
L
A
R
R
A
T
A
I
I
E
M
-
P
D
G
-
V
L
V
T
A
S
------
R
Y
N
L
P
G
----
G
--
K
------
A
N
R
G
E
-
L
R
S
Q
A
L
I
R
E
I
R
E
--------
E
TGL
R
I
N
S
M
L
Y
L
F
D
H
I
T
PFNA
H
K
-
V
Y
L
-
C
I
A
G
-----
Q
P
K
P
Q
------
N
E
I
E
R
I
A
-
L
V
--
S
S
P
D
T
D
M
------
D
L
F
---------
V
E
-
G
R
A
I
-
L
R
R
Y
A
R
L
R
N
E
E
-------
T
A
K
G
--------------
E
A
L
-
R
A
L
L
-
G
---------
L
A
R
Y
I
A
K
V
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
46
Fugue
67.10
18%
-148
- C6 -
1VYI
5
A:
[1-111]
---------------------------------------------------------------------------------------------------------------------------
W
S
A
T
N
E
E
D
D
L
S
V
E
A
E
I
A
H
Q
I
A
E
S
F
S
K
-
K
Y
K
F
P
S
------
R
---
S
S
----
G
--
I
------
F
L
Y
N
F
-
E
Q
L
K
-
M
N
L
D
D
I
V
--------
K
---
E
A
K
N
V
P
---
G
V
T
------
R
-
L
A
H
-
D
G
S
K
-----
I
P
L
R
C
------
V
L
G
W
V
A
L
-
A
N
--
S
K
K
F
Q
L
L
--------------------------
V
E
A
D
K
L
S
K
I
M
Q
-------
D
D
L
N
--------------
R
Y
T
-
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
66.43
32%
-78
- C6 -
2YIU
2
CYB_PARDE
A:
[8-75]
------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
Y
E
-
P
K
----
T
--
G
------
F
E
R
W
L
-
H
R
R
--
L
P
I
V
S
L
V
--------
Y
---
D
T
L
M
I
P
T
P
K
N
L
N
------
W
-
W
W
I
-
W
G
I
V
-----
L
A
F
C
L
---------
V
L
Q
I
-
A
T
--
G
I
V
L
V
M
H
------
Y
T
P
---------
H
V
-
D
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
PsiBlast_CBE
66.02
32%
-75
- C6 -
2YIU
2
CYB_PARDE
D:
[8-75]
------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
Y
E
-
P
K
----
T
--
G
------
F
E
R
W
L
-
H
R
R
--
L
P
I
V
S
L
V
--------
Y
---
D
T
L
M
I
P
T
P
K
N
L
N
------
W
-
W
W
I
-
W
G
I
V
-----
L
A
F
C
L
---------
V
L
Q
I
-
A
T
--
G
I
V
L
V
M
H
------
Y
T
P
---------
H
V
-
D
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
49
Fugue
64.19
11%
-117
- C6 -
1QF6
-
SYT_ECOLI
A:
[63-242]
------------------------------------------------------------------------------------------------------------------------------
K
D
E
E
G
L
E
I
I
R
H
S
C
A
H
L
L
G
H
-
A
I
K
-
Q
L
W
P
H
T
------
K
M
A
-
I
G
P
V
I
D
N
--
G
------
F
Y
Y
D
V
-
D
L
D
R
T
L
T
Q
E
D
V
E
--------
A
---
L
E
K
R
M
H
E
L
A
E
K
N
------
Y
-
D
V
I
-
K
K
K
V
-----
S
W
H
E
A
------
R
E
T
F
A
N
R
-----
G
E
S
Y
K
V
S
------
I
L
D
---------
E
N
-
I
A
H
D
-
D
K
P
G
L
Y
F
H
E
E
Y
-------
V
D
M
C
R
G
PHVPNMRFCH
H
F
K
L
M
-
K
T
A
G
-
A
Y
WRGDSN
N
K
M
L
Q
R
I
Y
G
T
A
W
A
D
K
K
A
L
N
A
Y
L
Q
R
L
E
E
A
A
K
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
PsiBlast_CBE
63.42
34%
-79
- C6 -
2QJY
46
CYB_RHOSH
P:
[8-75]
------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
Y
E
-
P
R
----
T
--
G
------
I
E
K
W
L
-
H
S
R
--
L
P
I
V
A
L
A
--------
Y
---
D
T
I
M
I
P
T
P
R
N
L
N
------
W
-
M
W
I
-
W
G
V
V
-----
L
A
F
C
L
---------
V
L
Q
I
-
V
T
--
G
I
V
L
A
M
H
------
Y
T
P
---------
H
V
-
D
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
PsiBlast_CBE
62.31
34%
-72
- C6 -
2FYN
2
CYB_RHOSH
D:
[8-75]
------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
Y
E
-
P
R
----
T
--
G
------
I
E
K
W
L
-
H
S
R
--
L
P
I
V
A
L
A
--------
Y
---
D
T
I
M
I
P
T
P
R
N
L
N
------
W
-
M
W
I
-
W
G
V
V
-----
L
A
F
C
L
---------
V
L
Q
I
-
V
T
--
G
I
V
L
A
M
H
------
Y
T
P
---------
H
V
-
D
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
62.17
34%
-86
- C6 -
2QJK
-
CYB_RHOSH
A:
[6-73]
------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
Y
E
-
P
R
----
T
--
G
------
I
E
K
W
L
-
H
S
R
--
L
P
I
V
A
L
A
--------
Y
---
D
T
I
M
I
P
T
P
R
N
L
N
------
W
-
M
W
I
-
W
G
V
V
-----
L
A
F
C
L
---------
V
L
Q
I
-
V
T
--
G
I
V
L
A
M
H
------
Y
T
P
---------
H
V
-
D
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
61.26
34%
-76
- C6 -
2QJY
-
CYB_RHOSH
A:
[8-75]
------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
Y
E
-
P
R
----
T
--
G
------
I
E
K
W
L
-
H
S
R
--
L
P
I
V
A
L
A
--------
Y
---
D
T
I
M
I
P
T
P
R
N
L
N
------
W
-
M
W
I
-
W
G
V
V
-----
L
A
F
C
L
---------
V
L
Q
I
-
V
T
--
G
I
V
L
A
M
H
------
Y
T
P
---------
H
V
-
D
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
60.87
34%
-78
- C6 -
2FYN
2
CYB_RHOSH
A:
[8-75]
------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
Y
E
-
P
R
----
T
--
G
------
I
E
K
W
L
-
H
S
R
--
L
P
I
V
A
L
A
--------
Y
---
D
T
I
M
I
P
T
P
R
N
L
N
------
W
-
M
W
I
-
W
G
V
V
-----
L
A
F
C
L
---------
V
L
Q
I
-
V
T
--
G
I
V
L
A
M
H
------
Y
T
P
---------
H
V
-
D
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
60.60
34%
-76
- C6 -
2QJP
2
CYB_RHOSH
A:
[6-73]
------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
Y
E
-
P
R
----
T
--
G
------
I
E
K
W
L
-
H
S
R
--
L
P
I
V
A
L
A
--------
Y
---
D
T
I
M
I
P
T
P
R
N
L
N
------
W
-
M
W
I
-
W
G
V
V
-----
L
A
F
C
L
---------
V
L
Q
I
-
V
T
--
G
I
V
L
A
M
H
------
Y
T
P
---------
H
V
-
D
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
59.17
31%
-82
- C6 -
1ZRT
2
CYB_RHOCA
C:
[8-75]
------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
Y
E
-
P
K
----
T
--
G
------
I
E
K
W
L
-
H
D
R
--
L
P
I
V
G
L
V
--------
Y
---
D
T
I
M
I
P
T
P
K
N
L
N
------
W
-
W
W
I
-
W
G
I
V
-----
L
A
F
T
L
---------
V
L
Q
I
-
V
T
--
G
I
V
L
A
M
H
------
Y
T
P
---------
H
V
-
D
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
39
PsiBlast_CBE
58.40
31%
-90
- C6 -
1ZRT
2
CYB_RHOCA
P:
[8-75]
------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
Y
E
-
P
K
----
T
--
G
------
I
E
K
W
L
-
H
D
R
--
L
P
I
V
G
L
V
--------
Y
---
D
T
I
M
I
P
T
P
K
N
L
N
------
W
-
W
W
I
-
W
G
I
V
-----
L
A
F
T
L
---------
V
L
Q
I
-
V
T
--
G
I
V
L
A
M
H
------
Y
T
P
---------
H
V
-
D
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
47
Fugue
54.29
17%
-119
- C7 -
1HKY
-
?
A:
[1-86]
------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
Y
K
-
D
D
----
D
--
D
K
V
K
L
T
C
Y
Q
N
G
V
-
S
F
T
G
G
K
A
I
S
E
A
K
--------
A
---
A
S
S
Q
A
C
Q
E
L
C
E
K
------
D
-
A
K
C
-
R
---------
F
F
T
L
------
A
S
G
K
C
S
L
-
F
A
--
D
D
A
A
L
R
P
TKSDG
A
V
S
G
---------
N
K
-
R
C
I
L
-
L
E
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
47.03
42%
-93
- C9 -
2EWB
2
AMPL_BOVIN
A:
[355-386]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
N
------
A
-
A
T
L
-
T
G
-
A
-----
M
D
I
A
L
------
G
S
G
A
T
G
V
-
F
T
--
N
S
S
W
L
W
N
------
K
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
46.62
42%
-91
- C9 -
1BLL
1
AMPL_BOVIN
E:
[356-387]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
N
------
A
-
A
T
L
-
T
G
-
A
-----
M
D
I
A
L
------
G
S
G
A
T
G
V
-
F
T
--
N
S
S
W
L
W
N
------
K
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------