@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo2519: (2016-04-04 )
LLIWSILISFAVGIIMVPIIRKFAFRINAVDTPRERHKHTKTTATLGGLAIFISFSVGMILAPIDKSGFLPIYFGALIIIATGFIDDIFDLSPKWKMLGQILAALCVTVWGDITINFINVPFYGQVDFGYFAIPLSIIWIVAIVNALNLIDGLDGLAGGISIIALMTIAGMALLLKDVFVAPVALILVAAVAAFLIYNFPPASIFMGDTGALFLGYMIAVLSLMGFKNVTFISLLVPLIILGVPLSDTFFAIVRRLKERMPISSADRSHIHHRLMALGFTEKQTVLLIYCMALLFSMTGFVFSFSTTWGAMLLLLLLIFSIEIIVEFIGLIGEDYRPILNLLQKIHRKRK
Atome Classification :
(20 SA)
------------------------------------------------------------....-------------------------...-..10...----.....20........30.-.......40........50........----------------------60-....-------....-----.70----...-.....80.-.---......90------......-..100.......-110---.........120----......-...130...--.-.-..140......-----------------.150-..--......160----......--...170.--..-----------------....-------180.---------------......190.....-..200..-------.--.----..-.210------.......220.......230......-.240...--....250......-.260..-.....270....---.....280.....---.---.290........300.....----.------------------.310.......320.-...------.-..330.----------..---....340.......350------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------
L
L
I
W
-------------------------
S
I
L
-
I
S
F
A
V
G
I
----
I
M
V
P
I
I
R
K
F
A
F
R
INAVDT-
P
R
E
R
HKHTKTTATLG
G
L
A
I
F
I
S
FSV
G
M
----------------------
I
--
L
API-------DKSG-----F
L
P
----
I
Y
F
-
G
A
L
I
I
I
A
T
-
G
---
F
I
D
D
I
FDL------S
P
K
W
K
M
-
L
G
Q
I
L
A
A
L
C
V
T
V-W-----G
D
I
T
I
N
F
INV------
P
F
Y
GQV-DF
G
Y
F
A
I
P
L
--
S
-
I
-
I
W
I
V
A
I
V
N
A
L
N
-----------------
L
I
D
--
G
L
--
D
G
L
A
G
G
I
------
S
I
I
A
L
M
--
T
I
A
G
M
A
L
--
L
L
-----------------
K
D
V
F
-------
V
A
P
V
---------------
A
L
I
L
V
A
A
V
A
A
F
L
I
Y-NF
P
P
A
S
I
-------
F
--M----GD-
T
G
A
L
------
F
L
G
Y
M
I
A
V
L
S
L
MGFKN
V
T
F
I
S
L
L
V
P
L
-
I
I
LGVPL--
S
D
T
F
F
A
I
V
R
R
L
K
E
-RMPISS-A
D
R
S
H
I
--
H
H
R
L
---
M
ALGFTEK
Q
T
V
L
L
---
I
---
Y
C
-
M
A
L
L
F
S
MT
G
F
V
F
S
FST
T
----
W
------------------
G
A
M
L
L
L
L
L
L
I
F
S
I
E
I
-
I
V
E
------
F
-
I
G
L
IGE----------
D
Y
---
R
P
I
L
N
L
L
Q
K
I
H
RKRK--------------------------------
19
Fugue
84.97
20%
-160
- C7 -
4QT9
2
?
A:
[19-432]
---------------------------------------------LS
D
D
A
L
M
D
T
V
Q
R
R
T
F
L
Y
F
W
EGAEPNSGLAPERYHVDGVYPQNDA
N
V
V
-
T
S
G
G
S
G
F
G
I
M
A
I
L
A
G
I
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V
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E
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A
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A
Y
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W
Y
G
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T
G
K
----------------------
V
KP
F
G
Q
K
-------
D
N
G
G
D
L
---
V
E
T
----
A
F
L
M
Q
G
L
L
A
V
H
Q
-
Y
---
Y
A
N
G
----------
N
D
K
E
K
A
-
I
A
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I
D
R
L
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R
E
V
D
W
-----
D
W
Y
R
K
G
G
Q
N
V
LYWHWS
P
T
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E
M
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F
P
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H
G
Y
N
E
--
C
M
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G
-----------------
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P
A
--
A
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Y
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W
A
Q
N
G
------
A
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P
H
--
K
V
E
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E
L
--
H
L
-----------------
R
--
Y
-------
Q
G
T
E
---------------
A
G
P
L
F
W
A
Q
Y
S
F
L
---
G
L
D
P
V
G
L
KDEYCPS
Y
--
F
----
H
E
M
R
N
L
T
------
L
V
N
R
A
Y
C
I
R
N
P
K
H
Y
K
G
F
-------
G
P
-
D
C
W
G
L
T
A
--
S
Y
S
----
V
D
G
Y
A
A
-
H
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N
E
Q
-
D
D
K
G
V
I
SP
T
A
A
L
---
S
S
I
V
Y
T
P
E
Y
S
L
Q
V
M
R
H
L
---
Y
N
M
G
D
K
V
F
G
P
F
G
F
Y
D
A
F
S
E
T
DN--
W
------------------
Y
P
Q
R
Y
L
A
I
D
Q
G
P
I
A
V
M
I
E
N
------
Y
R
T
G
L
L
W
K
----------
L
F
M
S
H
P
D
V
Q
A
G
L
T
K
L
G
F
N
T
N
--------------------------------
15
Fugue
84.08
26%
-152
- C7 -
4J72
3
MRAY_AQUAE
A:
[20-363]
-----------------------------------------------------------------------------------------
F
A
F
-
N
V
L
K
Y
I
T
----
F
R
S
F
T
A
V
L
I
A
F
F
L
T
L
V
L
S
-
P
S
F
I
N
R
L
K
K
Y
T
P
T
M
G
G
I
V
I
L
I
V
V
T
L
S
T
----------------------
L
--
L
L
M
R
-------
W
D
I
K
-----
Y
T
W
----
V
V
L
-
L
S
F
L
S
F
G
T
I
G
---
F
W
D
D
Y
V
K
L
KNKKGI
S
I
K
T
K
F
-
L
L
Q
V
L
S
A
S
L
I
S
V
-
L
I
YYWA
D
I
D
T
I
L
Y
F
P
F
------
F
K
E
L
Y
V
-
D
L
G
V
L
Y
L
P
F
--
A
-
V
-
F
V
I
V
G
S
A
N
A
V
N
-----------------
L
T
D
--
G
L
--
D
G
L
A
I
G
P
------
A
M
T
T
A
T
--
A
L
G
V
V
A
Y
--
A
V
-----------------
G
H
S
K
-------
I
A
Q
Y
L
N
I
P
Y
V
P
YA
G
E
L
T
V
F
C
F
A
L
V
G
A
G
L
G
F
L
W
F
-
N
S
F
P
A
Q
M
-------
F
--
M
----
G
D
-
V
G
S
L
------
S
I
G
A
S
L
A
T
V
A
L
L
--
T
K
S
E
F
I
F
A
V
A
A
G
-
V
F
V
F
E
T
I
--
S
V
I
L
Q
I
I
Y
F
R
W
T
G
-
G
K
R
L
F
K
---
R
A
P
F
--
H
H
H
L
---
E
L
N
G
L
P
E
P
K
I
V
V
R
---
M
---
W
I
-
I
S
I
L
L
A
I
I
A
I
S
-----------------------------------------------------------------------------------------
M
L
K
--------------------------------
23
Fugue
66.39
14%
-161
- C5 -
3TAT
2
TYRB_ECOLI
A:
[1-397]
MFQKVDAYAGD
P
I
L
T
L
M
E
R
F
K
E
DPRSD
K
V
N
L
SIG
L
Y
Y
N
EDGIIPQL
Q
A
V
A
E
A
E
A
R
L
N
A
Q
P-
H
G
A
-------------------------
S
L
Y
-
L
P
M
E
G
L
N
----
C
Y
R
H
A
I
A
P
L
L
F
G
A
-
D
H
P
V
-
L
K
Q
Q
R
V
A
---
T
I
Q
T
L
G
G
S
G
A
L
K
V
G
A
D
F
----------------------
L
--
K
R
Y
F
-----------PE
S
G
V
W
V
S
DPTW
E
N
H
-
V
A
I
F
A
G
-
A
-
G
FE
V
S
T
Y
P
W
Y
D
E
------
A
T
N
-
G
V
R
F
N
D
L
L
A
T
L
K
T
L
P
----------
A
R
S
I
V
L
L
------
H
P
C
C
H
N
-
P
T
G
A
D
L
T
N
D
--
Q
-
W
-
D
A
V
I
E
I
L
K
A
R
E
-----------------
L
I
P
--
F
L
--
D
I
A
Y
Q
G
F
GAGMEE
D
A
Y
A
I
R
--
A
I
A
S
A
G
L
-----------------------------------
P
---------------
A
L
V
S
N
S
F
S
K
I
F
S
L
Y
-
G
E
R
V
G
G
L
-------
S
--
V
M
C
ED
A
E
-
A
A
G
R
------
V
L
G
Q
L
K
A
T
V
R
R
N
Y
S
S
P
P
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F
G
A
Q
V
V
A
A
-
V
L
N
D
E
A
L
--
K
A
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W
L
A
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V
E
E
M
R
T
-
R
I
---
L
-
A
M
R
Q
E
L
--
V
K
V
L
---
S
T
E
M
P
E
R
N
F
D
Y
L
L
---
N
---
Q
R
-
G
M
F
S
Y
T
G
L
S
---------------------------------
A
A
Q
V
D
R
L
R
E
E
F
G
V
-
Y
L
I
ASGRMC
V
-
A
G
L
N
T
A
----------
N
V
---
Q
R
V
A
K
A
F
A
A
V
M
------------------------------------
18
Fugue
63.06
17%
-143
- C7 -
3MK7
8
CCON1_PSEST
A:
[5-470]
--------------------------------------------TSTAYSY
K
V
V
R
Q
F
A
I
M
T
V
V
W
-------------------------
G
I
V
G
M
G
L
G
V
F
I
----
A
A
Q
L
A
W
P
F
L
N
F
D
L
P
W
T
S
F
-
G
R
L
R
P
L
H
T
N
A
V
I
F
A
F
G
G
C
A
L
F
A
T
S
Y
Y
S
----------------------
V
--
Q
R
T
C
QTTLFA
P
K
L
A
A
-----
F
T
F
----
W
G
W
-
Q
L
V
I
L
L
A
A
-
I
---
S
L
P
L
G
F
T
S
------
S
K
E
Y
A
E
-
L
E
W
P
I
D
I
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I
T
I
V
-
W
-----
V
A
Y
A
V
V
F
F
G
T
------
L
A
K
R
K
V
-
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H
I
Y
V
G
N
W
F
F
G
A
-
F
-
I
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L
H
V
V
N
N
LEIPVTAM
K
S
Y
S
LYAG
A
T
D
--
A
M
--
V
Q
W
W
Y
G
H
------
N
A
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F
F
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A
G
F
L
G
--
I
M
Y
Y
F
V
P
K
Q
A
ERPVYS
Y
R
L
S
I
V
H
-------
F
W
A
L
---------------
I
T
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Y
I
W
A
G
P
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H
L
H
Y
T
A
L
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D
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A
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L
----
G
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I
L
L
A
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A
---
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A
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G
A
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Y
H
-
L
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F
G
R
E
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M
H
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N
T
H
F
W
------------------
L
A
T
I
G
T
V
L
Y
I
A
S
M
W
V
-
N
G
I
------
A
-
Q
G
L
M
W
R
AINDDGTLTY
S
F
---
V
E
S
L
E
A
S
H
P
G
F
V
V
R
M
I
G
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I
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L
V
M
A
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W
R
T
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Q
AAKPAEYDAA
17
Fugue
60.25
10%
-171
* C5 *
1OCK
-
?
A:
[1-412]
---------------------------------------------------MIS
L
A
D
L
Q
R
R
I
E
T
-------------------------
G
E
L
-
S
P
N
A
A
I
A
----
Q
S
H
A
A
I
E
A
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E
K
E
V
H
A
F
V
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-
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A
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D
I
I
D
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ANMPTEMGSEIYRGWQPRSDA
P
V
--
V
M
M
L
-------
K
R
A
G
-----
A
T
I
----
I
G
K
-
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T
T
T
A
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R
---
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P
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A
T
L
N
P
------
H
N
T
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H
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G
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G
S
A
A
A
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-----
A
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-----------
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Q
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T
G
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--
A
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-
C
G
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A
A
I
K
P
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F
R
-----------------
M
L
P
TV
G
V
--
K
C
Y
S
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A
L
------
D
T
V
G
L
F
G
A
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A
E
D
L
A
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--
G
L
-----------------
L
A
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T
GRSEFSG
I
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A
---------------
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A
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G
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V
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F
A
G
-
A
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A
A
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-------
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--
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----
L
Q
-
A
A
I
K
------
A
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R
A
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A
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A
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Y
S
----
A
PGTAPAKALASTGDPRYN
R
L
W
T
L
M
G
N
P
C
V
N
V
P
V
-
L
K
V
GG
L
P
I
-
G
-
V
Q
V
I
A
R
----------
F
G
N
D
-
A
H
A
L
A
T
A
W
F
L
E
D
A
L
A
K-------------------------------
24
Fugue
56.64
11%
-160
- C5 -
3CMN
-
?
A:
[43-395]
------------------------------------------------------------
L
I
D
W
-------------------------
E
Q
A
-
R
Q
A
A
L
R
L
----
S
----------
Q
W
E
Q
A
P
V
-
D
N
R
A
F
R
R
E
Q
Y
A
R
M
V
A
L
S
E
P
L
I
A
D
Y
L
G
V
----------------------
R
--
L
P
E
P
-------
V
S
R
I
-----
F
V
F
----
D
R
R
-
E
W
L
E
A
N
I
V
-
S
---
F
S
Q
L
F
R
P
I
------
E
E
M
Y
E
K
-
S
S
K
L
L
G
V
Q
I
G
G
L
-
L
-----
G
Y
L
A
Q
R
V
L
-----------
G
Q
Y
-
D
L
S
L
L
S
A
G
G
--
S
-
L
-
Y
F
V
E
P
N
I
A
R
V
Q
-----------------
Q
Q
L
--
G
L
--
S
----
D
E
------
D
F
R
L
W
I
--
T
L
H
E
M
T
H
--
A
F
-----------------
E
F
E
A
-------
Y
P
W
V
---------------
R
T
Y
F
R
E
L
L
E
Q
N
F
A
L
-
T
----------------------
P
-
E
Q
R
A
------
V
F
D
R
I
Q
A
L
M
S
L
I
E
G
Y
G
N
H
V
M
N
A
V
G
R
R
-
L
L
--------
P
S
F
N
Q
I
E
Q
Q
I
A
Q
-
R
Q
R
Q
R
T
-
M
L
D
Q
M
V
--
F
R
L
T
----
G
L
D
L
K
L
A
Q
Y
Q
Q
G
---
E
---
A
F
-
V
N
A
V
V
A
A
R
G
-
I
Q
F
A
S
R
V
----
W
------------------
E
R
P
E
N
L
P
S
-----------------------
M
D
----------
E
I
---
R
N
P
G
Q
W
I
V
R
M
D
R
E
G
---------------------------------
4
PsiBlast_PDB
49.93
25%
-179
- C6 -
3T8J
1
?
A:
[102-210]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
L
A
-----------------
I
I
D
--
L
A
--
N
E
Y
A
G
E
L
------
E
F
L
A
I
S
--
P
L
T
N
L
A
L
A
Y
L
L
-----------------
D
N
S
I
-------
V
K
K
I
---------------
K
K
V
W
V
M
G
G
A
V
F
G
I
G
-
N
I
T
P
V
A
E
-------
F
N
I
W
----
V
D
-
P
D
A
A
------
K
I
V
F
-----------
N
A
G
F
D
I
T
M
I
P
W
D
V
I
I
N
Y
P
V
--
T
D
E
E
W
N
V
I
K
N
M
K
T
-
R
M
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
39.97
31%
61
- C6 -
3RIW
2
?
A:
[128-172]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
L
P
D
G
S
-
K
T
Q
S
H
V
--
R
E
V
F
---
R
R
L
G
F
N
D
Q
E
T
V
A
L
---
I
GAH
T
C
-
G
E
T
H
I
E
F
S
G
Y
-----------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
38.56
31%
51
- C6 -
3RIV
2
?
A:
[128-172]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
L
P
D
G
S
-
K
T
Q
S
H
V
--
R
E
V
F
---
R
R
L
G
F
N
D
Q
E
T
V
A
L
---
I
GAH
T
C
-
G
E
C
H
I
E
F
S
G
Y
-----------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
38.39
31%
54
- C6 -
5AL9
2
?
A:
[127-171]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
L
P
D
G
S
-
K
T
Q
S
H
V
--
R
E
V
F
---
R
R
L
G
F
N
D
Q
E
T
V
A
L
---
I
GAH
T
C
-
G
E
C
H
I
E
F
S
G
Y
-----------------------------------------------------------------------------------------------------------------------------
22
Fugue
35.31
22%
49
* C7 *
1UFI
-
CENPB_HUMAN
A:
[3-50]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
M
-
P
V
P
S
F
G
E
--
A
M
A
Y
F
A
M
V
K
R
Y
L
T
-
S
F
P
I
D
D
-
R
V
Q
S
H
I
--
L
H
L
E
---
H
D
L
V
H
V
T
R
K
N
----------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
35.06
25%
133
- C7 -
1ZXA
-
KGP1_HUMAN
A:
[9-44]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
I
L
M
L
K
E
E
R
-
I
K
E
------
L
-
E
K
R
L
S
E
----------
K
E
---
E
E
I
Q
E
L
K
R
K
L
H
K
C
Q
---------------------------------
14
HHSearch
31.90
14%
593
* C6 *
3TWE
1
?
A:
[8-21]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
E
L
E
D
L
Q
E
R
L
R
K
L
R
---------------------------------
16
Fugue
28.51
12%
78
- C7 -
2ZI0
2
2B_TAV
A:
[5-64]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
I
P
L
H
E
I
I
R
K
L
E
R
M
N
Q
K
K
Q
A
-
Q
R
K
R
H
K
--
L
N
R
K
E
R
G
H
K
S
P
S
E
Q
R
R
S
E
L
W
---
H
---
A
R
-
Q
V
E
L
S
A
I
N
S
D
N
----------------------------------------------------------------------------------------------------------------------------
21
Fugue
26.46
24%
310
- C7 -
3RA3
-
?
B:
[3-27]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
R
L
K
Q
-
K
N
A
R
L
K
-
Q
E
I
A
A
L
--
E
Y
E
I
---
A
A
L
E
----------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
21.04
27%
425
* C4 *
3WW3
1
?
A:
[175-204]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
S
Y
V
R
L
R
A
-
G
D
P
K
F
V
-
M
H
R
K
H
L
--
H
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
19.79
21%
568
- C4 -
3U43
-
IMM2_ECOLX
A:
[75-93]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
A
A
N
-
G
K
S
G
F
K
-
Q
G
L
E
H
H
--
H
H
H
------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
18.87
42%
1310
- C2 -
3QRX
-
B:
[14-21]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
A
L
I
S
W
I
K
------------------------------------
6
HHSearch
17.39
5%
233
- C6 -
2LS4
-
A:
[5-23]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
C
---------------
I
A
V
A
A
G
A
G
T
G
Y
F
L
F
-
S
W
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
14.36
13%
1369
- C1 -
2AN6
-
?
E:
[8-18]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
---
R
P
V
A
M
V
R
P
T
V
-------------------------------------