@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo2619: (2016-04-05 )
VAKKSMIAKQKRTPKYAVQAYTRCERCGRPHSVIRKFKLCRICFRELAYKGQIPGVKKASW
Atome Classification :
(20 SA)
.........10........20........30........40........50........60
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
VA
K
K
S
M
I
A
K
QKRT
P
K
Y
A
V
Q
A
Y
T
R
C
E
RCGR
P
H
S
V
I
R
K
F
K
L
C
R
I
C
F
R
E
L
AYKGQIPGVKKASW
25
PsiBlast_CBE
98.28
68%
-157
- C9 -
4LFA
12
RS14Z_THET8
N:
[2-61]
-
A
R
K
A
L
I
E
K
A
K
R
T
P
K
F
K
V
R
A
Y
T
R
C
V
R
C
G
R
A
R
S
V
Y
R
F
F
G
L
C
R
I
C
L
R
E
L
A
H
K
G
Q
L
P
G
V
R
K
A
S
W
30
PsiBlast_CBE
97.68
68%
-144
- C9 -
4LF5
13
RS14Z_THET8
N:
[2-61]
-
A
R
K
A
L
I
E
K
A
K
R
T
P
K
F
K
V
R
A
Y
T
R
C
V
R
C
G
R
A
R
S
V
Y
R
F
F
G
L
C
R
I
C
L
R
E
L
A
H
K
G
Q
L
P
G
V
R
K
A
S
W
68
PsiBlast_CBE
97.63
70%
-133
- C9 -
4YHH
5
RS14Z_THET8
N:
[1-60]
-
A
R
K
A
L
I
E
K
A
K
R
T
P
K
F
K
V
R
A
Y
T
R
C
V
R
C
G
R
A
R
S
V
Y
R
F
F
G
L
C
R
I
C
L
R
E
L
A
H
K
G
Q
L
P
G
V
R
K
A
S
W
54
PsiBlast_CBE
97.43
68%
-138
- C9 -
4DR5
14
RS14Z_THET8
N:
[2-61]
-
A
R
K
A
L
I
E
K
A
K
R
T
P
K
F
K
V
R
A
Y
T
R
C
V
R
C
G
R
A
R
S
V
Y
R
F
F
G
L
C
R
I
C
L
R
E
L
A
H
K
G
Q
L
P
G
V
R
K
A
S
W
72
PsiBlast_CBE
97.11
70%
-144
- C9 -
4GKJ
6
RS14Z_THET8
N:
[1-60]
-
A
R
K
A
L
I
E
K
A
K
R
T
P
K
F
K
V
R
A
Y
T
R
C
V
R
C
G
R
A
R
S
V
Y
R
F
F
G
L
C
R
I
C
L
R
E
L
A
H
K
G
Q
L
P
G
V
R
K
A
S
W
90
Fugue
96.95
70%
-150
- C9 -
1FJG
-
RS14Z_THET8
N:
[2-61]
-
A
R
K
A
L
I
E
K
A
K
R
T
P
K
F
K
V
R
A
Y
T
R
C
V
R
C
G
R
A
R
S
V
Y
R
F
F
G
L
C
R
I
C
L
R
E
L
A
H
K
G
Q
L
P
G
V
R
K
A
S
W
77
PsiBlast_CBE
96.78
70%
-136
- C9 -
4AQY
17
RS14Z_THET8
N:
[1-60]
-
A
R
K
A
L
I
E
K
A
K
R
T
P
K
F
K
V
R
A
Y
T
R
C
V
R
C
G
R
A
R
S
V
Y
R
F
F
G
L
C
R
I
C
L
R
E
L
A
H
K
G
Q
L
P
G
V
R
K
A
S
W
83
PsiBlast_CBE
96.61
70%
-134
* C9 *
1N32
158
RS14Z_THET8
N:
[1-60]
-
A
R
K
A
L
I
E
K
A
K
R
T
P
K
F
K
V
R
A
Y
T
R
C
V
R
C
G
R
A
R
S
V
Y
R
F
F
G
L
C
R
I
C
L
R
E
L
A
H
K
G
Q
L
P
G
V
R
K
A
S
W
6
PsiBlast_PDB
96.52
68%
-146
- C9 -
1IBK
112
RS14Z_THET8
N:
[2-61]
-
A
R
K
A
L
I
E
K
A
K
R
T
P
K
F
K
V
R
A
Y
T
R
C
V
R
C
G
R
A
R
S
V
Y
R
F
F
G
L
C
R
I
C
L
R
E
L
A
H
K
G
Q
L
P
G
V
R
K
A
S
W
55
PsiBlast_CBE
96.51
68%
-142
- C9 -
4DR4
15
RS14Z_THET8
N:
[2-61]
-
A
R
K
A
L
I
E
K
A
K
R
T
P
K
F
K
V
R
A
Y
T
R
C
V
R
C
G
R
A
R
S
V
Y
R
F
F
G
L
C
R
I
C
L
R
E
L
A
H
K
G
Q
L
P
G
V
R
K
A
S
W
12
PsiBlast_PDB
96.48
68%
-143
- C9 -
1XMO
107
RS14Z_THET8
N:
[2-61]
-
A
R
K
A
L
I
E
K
A
K
R
T
P
K
F
K
V
R
A
Y
T
R
C
V
R
C
G
R
A
R
S
V
Y
R
F
F
G
L
C
R
I
C
L
R
E
L
A
H
K
G
Q
L
P
G
V
R
K
A
S
W
39
PsiBlast_CBE
96.38
68%
-150
- C9 -
4JI2
14
RS14Z_THET8
N:
[2-61]
-
A
R
K
A
L
I
E
K
A
K
R
T
P
K
F
K
V
R
A
Y
T
R
C
V
R
C
G
R
A
R
S
V
Y
R
F
F
G
L
C
R
I
C
L
R
E
L
A
H
K
G
Q
L
P
G
V
R
K
A
S
W
57
PsiBlast_CBE
96.36
68%
-148
- C9 -
4DR2
16
RS14Z_THET8
N:
[2-61]
-
A
R
K
A
L
I
E
K
A
K
R
T
P
K
F
K
V
R
A
Y
T
R
C
V
R
C
G
R
A
R
S
V
Y
R
F
F
G
L
C
R
I
C
L
R
E
L
A
H
K
G
Q
L
P
G
V
R
K
A
S
W
65
PsiBlast_CBE
96.23
68%
-154
- C9 -
2UXC
3
RS14Z_THET8
N:
[2-61]
-
A
R
K
A
L
I
E
K
A
K
R
T
P
K
F
K
V
R
A
Y
T
R
C
V
R
C
G
R
A
R
S
V
Y
R
F
F
G
L
C
R
I
C
L
R
E
L
A
H
K
G
Q
L
P
G
V
R
K
A
S
W
1
PsiBlast_PDB
96.22
68%
-150
- C9 -
1FJG
-
RS14Z_THET8
N:
[2-61]
-
A
R
K
A
L
I
E
K
A
K
R
T
P
K
F
K
V
R
A
Y
T
R
C
V
R
C
G
R
A
R
S
V
Y
R
F
F
G
L
C
R
I
C
L
R
E
L
A
H
K
G
Q
L
P
G
V
R
K
A
S
W
100
HHSearch
96.11
69%
-144
- C9 -
2VQE
3
RS14Z_THET8
N:
[2-61]
-
A
R
K
A
L
I
E
K
A
K
R
T
P
K
F
K
V
R
A
Y
T
R
C
V
R
C
G
R
A
R
S
V
Y
R
F
F
G
L
C
R
I
C
L
R
E
L
A
H
K
G
Q
L
P
G
V
R
K
A
S
W
40
PsiBlast_CBE
96.11
68%
-127
- C9 -
4JI1
16
RS14Z_THET8
N:
[2-61]
-
A
R
K
A
L
I
E
K
A
K
R
T
P
K
F
K
V
R
A
Y
T
R
C
V
R
C
G
R
A
R
S
V
Y
R
F
F
G
L
C
R
I
C
L
R
E
L
A
H
K
G
Q
L
P
G
V
R
K
A
S
W
8
PsiBlast_PDB
96.09
68%
-147
- C9 -
1IBM
120
RS14Z_THET8
N:
[2-61]
-
A
R
K
A
L
I
E
K
A
K
R
T
P
K
F
K
V
R
A
Y
T
R
C
V
R
C
G
R
A
R
S
V
Y
R
F
F
G
L
C
R
I
C
L
R
E
L
A
H
K
G
Q
L
P
G
V
R
K
A
S
W
35
PsiBlast_CBE
96.05
68%
-127
- C9 -
4JI6
18
RS14Z_THET8
N:
[2-61]
-
A
R
K
A
L
I
E
K
A
K
R
T
P
K
F
K
V
R
A
Y
T
R
C
V
R
C
G
R
A
R
S
V
Y
R
F
F
G
L
C
R
I
C
L
R
E
L
A
H
K
G
Q
L
P
G
V
R
K
A
S
W
78
PsiBlast_CBE
96.00
70%
-128
- C9 -
2ZM6
1
RS14Z_THET8
N:
[1-60]
-
A
R
K
A
L
I
E
K
A
K
R
T
P
K
F
K
V
R
A
Y
T
R
C
V
R
C
G
R
A
R
S
V
Y
R
F
F
G
L
C
R
I
C
L
R
E
L
A
H
K
G
Q
L
P
G
V
R
K
A
S
W