@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo2742: (2016-04-06 )
MNQTFIVKKEHISQYPNPLFVNKNESIWVFEEDTEYPGWIFCKVKSSGKEGWIPKQIIQISNDGKSGTVSEDYSARELNVKPGDKLESNRELNGWVWCVTEENEAGWVPRENLEV
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20........--30........40...--------.....50........60..------------.---------------------------------------------------------------------------------------------------.-----------------------------------------------------....70---------.------------..-----.---.---.---..80.......---------.90-----.-....-....100-------.........110...--------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MNQ
T
F
I
V
K
K
E
H
I
S
QYPN
P
L
F
VNKNE
S
I
W
V
--
F
EEDTEYP
G
W
I
F
C
K
V
--------KSSGKEGWI
P
K
Q
I
I
Q
ISND------------G---------------------------------------------------------------------------------------------------K-----------------------------------------------------SGTVSE---------D------------YS-----A---R---E---LNVKPGDKLES---------NR------E-LN
G
W
-
V
W
C
V
T---------EENEAGWVPRENLEV--------------------------------------------------
44
Fugue
80.32
19%
-73
- C5 -
4KRT
10
?
A:
[7-353]
H
H
H
H
H
M
Q
SRNNN
N
L
K
G
I
D
V
S
NWKGNIN
F
E
S
V
K
N
D
GVE
V
V
Y
I
K
A
T
EGNYFKDKY
A
K
Q
N
Y
E
G
A
K
E
Q
G
L
S
V
G
F
Y
H
FFRANKG
A
K
D
Q
A
N
F
F
I
D
Y
L
N
E
I
GAVNYDCKLALDIETTEGVG
V
R
D
L
T
S
M
C
I
E
F
L
E
E
V
K
R
L
T
G
K
E
V
V
V
Y
T
Y
T
S
F
A
N
N
NLDSRLGNYPVW
I
A
H
Y
GVNTPGANNIWSSWVGFQYSEN
G
S
V
A
GVN
G
G
C
D
M
N
E
F
T
EEIFIDSSNFNLDN
A
T
T
K
N
V
S
T
K
L
N
I
R
A
K
G
T
T
N
S
K
I
I
G
S
I
P
A
G
E
T
F
K
I
--
K
W
V
D
E
D
Y
L
G
W
Y
Y
V
E
Y
--------
N
--
G
V
V
G
Y
V
N
A
D
Y
V
E
K
L
Q
M
------------
A
---------------------------------------------------------------------------------------------------
T
-----------------------------------------------------
T
Y
N
V
S
T
---------
F
------------
L
N
-----
V
---
R
---
E
EGS
L
N
S
R
I
V
D
K
I
N
S
G
D
I
F
R
IDWV
D
S
------
D
-
F
I
G
W
-
Y
R
I
T
T
---------
K
N
G
K
V
G
F
V
N
A
E
F
V
K
K
L-------------------------------------------------
23
HHSearch
72.07
23%
-67
- C5 -
1NG2
-
NCF1_HUMAN
A:
[159-282]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
T
Y
R
A
I
A
D
Y
E
K
T
S
G
S
E
M
A
L
S
T
G
D
V
V
E
V
--
V
E
K
S
E
--
S
G
W
W
F
C
Q
M
--------
K
--
A
K
R
G
W
I
P
A
S
F
L
E
P
L
D
S
------------
P
DETEDPEPNYA
G
---------------------------------------------------------------------------------------
E
-----------------------------------------------------
P
Y
V
A
I
K
---------
A
------------
Y
T
-----
A
---
V
EGD
E
---
V
S
L
L
E
G
E
A
V
E
V
---------
I
H
------
K
L
L
D
G
W
-
W
V
I
R
----------
K
D
D
V
T
G
Y
F
P
S
M
Y
L
Q
K
--------------------------------------------------
21
HHSearch
68.05
20%
-79
- C5 -
1GRI
-
GRB2_HUMAN
A:
[1-212]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
A
I
A
K
Y
D
F
K
A
T
A
D
D
E
L
S
F
K
R
G
D
I
L
K
V
---------
Q
N
W
Y
K
A
E
L
--------
N
--
G
K
D
G
F
I
P
K
N
Y
I
E
M
K
P
H
------------
P
WFFGKIP
R
A
K
A
E
E
MLSKQRHDG
A
F
L
I
R
E
S
ESAPG
D
F
S
L
S
V
KFGN
D
V
Q
H
F
K
V
L
R
D
GAGKYFLWVVKFNS
L
N
E
L
V
D
Y
H
R
STSVSRNQQI
F
L
R
D
I
E
Q
V
P
Q
Q
P
T
-----------------------------------------------------
Y
V
Q
A
L
F
---------
D
------------
F
D
-----
P
QED
G
---
E
---
L
G
F
R
R
G
D
F
I
H
V
---------
M
D
------
N
S
D
P
N
W
-
W
K
G
A
----------
C
H
G
Q
T
G
M
F
P
R
N
Y
V
T
P
--------------------------------------------------
26
HHSearch
67.83
17%
-74
- C5 -
2LQN
-
CRKL_HUMAN
A:
[126-293]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
Y
V
R
T
L
Y
D
F
P
G
N
D
A
E
D
L
P
F
K
K
G
E
I
L
V
I
--
I
E
K
P
E
--
E
Q
W
W
S
A
R
N
--------
K
D
-
G
R
V
G
M
I
P
V
P
Y
V
E
K
L
V
R
------------
S
---------------------------------------------------------------------------------------------------
S
PHGKHGNRNSN
S
Y
G
I
P
E
PAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQN
G
P
V
F
A
K
A
I
Q
---------
K
------------
R
V
P
C
AYD
K
---
T
---
A
---
L
A
L
E
V
G
D
I
V
K
V
---------
T
R
------
M
N
I
N
G
Q
-
W
E
G
E
----------
V
N
G
R
K
G
L
F
P
F
T
H
V
K
I
--------------------------------------------------
39
HHSearch
65.90
24%
-39
- C5 -
1MV3
-
BIN1_HUMAN
A:
[374-479]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
A
S
S
S
L
P
A
V
V
V
E
T
F
P
A
------------
T
V
N
G
T
VEGGS
G
A
G
R
LDLPPGFM------------------------------------------------------------------------------
F
-----------------------------------------------------
K
V
Q
A
Q
H
---------
D
------------
Y
T
-----
A
T
D
T
D
---
E
---
L
Q
L
K
A
G
D
V
V
L
V
---------
I
P
F
QNPEE
Q
-
D
E
G
W
-
L
M
G
V
K
E
S
D
W
N
Q
HKK
L
E
K
C
R
G
V
F
P
E
N
F
T
E
---------------------------------------------------
13
PsiBlast_PDB
65.84
26%
-110
- C5 -
1UHC
-
A:
[13-77]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
Q
V
Y
F
A
V
Y
T
F
K
A
R
N
P
N
E
L
S
V
S
A
N
Q
K
L
K
I
LE
F
K
D
V
T
G
N
T
E
W
W
L
A
E
V
----------
N
G
K
K
G
Y
V
P
S
N
Y
I
R
K
T
E
S
------------
G
---------------------------------------------------------------------------------------------------
P
-----------------------------------------------------
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------
43
Fugue
64.13
19%
-48
- C5 -
1NG2
-
NCF1_HUMAN
A:
[157-332]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
L
Q
T
Y
R
A
I
A
D
Y
E
K
T
S
G
S
E
M
A
L
S
T
G
D
V
V
E
V
--
V
E
K
S
E
S
--
G
W
W
--
F
C
--------
Q
M
K
A
K
R
G
W
I
P
A
S
F
L
E
P
L
D
S
PDETEDPEPNYA
G
---------------------------------------------------------------------------------------------------
E
-----------------------------------------------------
P
Y
V
A
I
K
---------
A
------------
Y
T
-----
A
---
V
EGD
E
---
V
S
L
L
E
G
E
A
V
E
V
---------
I
H
------
K
-
L
L
D
G
-
W
W
V
I
R
---------
K
D
D
V
T
G
Y
F
P
S
M
Y
L
Q
K
SGQD
V
S
Q
A
Q
R
Q
IKRGAPPRRSSIR
N
A
H
S
IHQR
S
R
K
R
L
S
Q
D
A
Y
R
R
N
S
V
R
FL
25
HHSearch
62.95
14%
-66
- C5 -
2EYZ
-
CRK_HUMAN
A:
[135-293]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
Y
V
R
A
L
F
D
F
N
G
N
D
E
E
D
L
P
F
K
K
G
D
I
L
R
I
--
R
D
K
P
E
--
E
Q
W
W
N
A
E
D
--------
S
E
-
G
K
R
G
M
I
P
V
P
Y
V
E
K
Y
R
P
------------
A
---------------------------------------------------------------------------------------------------
S
ASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPI---------
Y
A
R
V
I
Q
---------
K
------------
R
V
P
N
---
A
YDK
T
---
A
---
L
A
L
E
V
G
E
L
V
K
V
---------
T
K
------
I
N
V
S
G
Q
-
W
E
G
E
C
----------
N
G
K
R
G
H
F
P
F
T
H
V
R
L
--------------------------------------------------
19
PsiBlast_PDB
60.50
26%
-98
- C5 -
2EGA
-
A:
[9-68]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
Q
Y
V
V
V
S
N
Y
K
K
Q
E
N
S
E
L
S
L
Q
A
G
E
V
V
D
V
--
I
E
K
N
E
--
S
G
W
W
F
--
V
--------
S
T
S
E
E
Q
G
W
V
P
A
T
Y
L
E
A
Q
N
S
------------
G
---------------------------------------------------------------------------------------------------
P
-----------------------------------------------------
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
58.66
36%
-146
- C5 -
4IIM
2
ITSN1_HUMAN
A:
[27-65]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
H
L
N
F
N
K
N
D
V
I
T
V
--
L
E
Q
Q
D
M
---
W
W
F
G
E
V
--------
Q
--
G
Q
K
G
W
F
P
K
S
Y
V
K
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
58.37
25%
-106
- C5 -
2JT4
-
A:
[10-68]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
Q
Y
D
F
M
A
E
S
Q
D
E
L
T
I
K
S
G
D
K
V
Y
I
--
L
D
-
D
K
K
S
K
D
W
W
M
C
Q
L
--------
V
D
S
G
K
S
G
L
V
P
A
Q
F
I
E
P
V
R
D
------------
K
---------------------------------------------------------------------------------------------------
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
57.55
36%
-50
- C5 -
1RI9
-
A:
[36-81]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
S
K
---------
K
------------
W
G
-----
T
---
R
---
D
---
L
Q
V
K
P
G
E
S
L
E
V
---------
I
Q
------
T
-
T
D
D
T
K
V
L
C
R
N
---------
E
E
G
K
Y
G
Y
V
L
R
S
Y
L
----------------------------------------------------
2
PsiBlast_PDB
57.19
24%
-114
- C5 -
1Z9Z
1
SLA1_YEAST
A:
[6-58]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
Q
Y
D
F
M
A
E
S
Q
D
E
L
T
I
K
S
G
D
K
V
Y
I
--
L
D
-
D
K
K
S
K
D
W
W
M
C
Q
L
--------
V
D
S
G
K
S
G
L
V
P
A
Q
F
I
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
HHSearch
57.02
14%
-43
- C5 -
3H41
5
?
A:
[58-175]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
K
L
E
T
Q
A
L
L
G
Q
E
V
T
V
--
V
D
K
K
---
G
D
W
V
K
V
L
V
H
GQPTPRN
E
E
-
G
Y
P
G
W
M
P
E
K
Q
L
T
Y
N
Q
E
------------
F
---------------------------------------------------------------------------------------------------
A
D
K
T
N
E
P
-----------------------------------------------
F
V
L
V
T
K
P
T
A
I
L
Y
I
N
P
S
------------
E
K
-----
H
---
K
---
S
---
L
E
V
S
Y
N
T
R
L
P
L
---------
L
S
------
E
-
D
T
I
S
-
Y
R
V
L
L
---------
P
N
G
Q
K
A
W
L
R
K
N
D
G
T
---------------------------------------------------
3
PsiBlast_PDB
56.39
24%
-113
- C5 -
2V1Q
2
SLA1_YEAST
A:
[6-58]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
Q
Y
D
F
M
A
E
S
Q
D
E
L
T
I
K
S
G
D
K
V
Y
I
--
L
D
-
D
K
K
S
K
D
W
W
M
C
Q
L
--------
V
D
S
G
K
S
G
L
V
P
A
Q
F
I
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
55.81
29%
-109
- C5 -
1YP5
-
A:
[12-56]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
G
S
P
S
E
L
P
L
K
K
G
D
V
I
Y
I
--
T
R
E
E
P
S
--
G
W
S
L
G
K
L
--------
L
D
G
S
K
E
G
W
V
P
T
A
Y
M
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
55.25
24%
-109
- C5 -
1FMK
-
SRC_HUMAN
A:
[82-154]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
T
T
F
V
A
L
Y
D
Y
E
S
R
T
E
T
D
L
S
F
K
K
G
E
R
L
Q
I
--
V
N
N
T
E
--
G
D
W
W
L
A
H
S
--------
L
S
T
G
Q
T
G
Y
I
P
S
N
Y
V
A
P
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
HHSearch
55.22
21%
-122
- C5 -
1OPK
-
ABL1_MOUSE
A:
[44-99]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
L
F
V
A
L
Y
D
F
V
A
S
G
D
N
T
L
S
I
T
K
G
E
K
L
R
V
--
L
G
Y
N
-
H
N
G
E
W
C
E
A
Q
T
--------
K
N
--
G
Q
G
W
V
P
S
N
Y
I
T
P
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
41
HHSearch
55.00
15%
-79
- C5 -
1XOV
2
?
A:
[216-326]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
I
K
M
Y
K
A
G
S
S
L
L
V
--
Y
E
H
N
---
K
Y
W
Y
K
A
Y
I
--------
N
--
D
K
L
C
Y
I
Y
K
S
F
C
I
S
N
G
K
------------
K
DAKG
R
----------------------------------------------------------------------------------------------
I
-----------------------------------------------------
K
V
R
I
K
S
---------
A
KD
L
R
I
P
V
W
NNTK
L
N
S----
G
---
K
---
I
---
K
W
Y
S
P
G
T
K
L
S
W
---------
Y
D
------
N
-
K
K
G
Y
-
L
E
L
W
Y
---------
E
K
D
G
W
Y
Y
T
A
N
Y
F
L
K
---------------------------------------------------
6
PsiBlast_PDB
55.00
29%
-115
- C5 -
1ZUY
1
MYO5_YEAST
A:
[12-56]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
G
S
P
S
E
L
P
L
K
K
G
D
V
I
Y
I
--
T
R
E
E
P
S
--
G
W
S
L
G
K
L
--------
L
D
G
S
K
E
G
W
V
P
T
A
Y
M
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------