@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo2746: (2016-04-06 )
MANLSELPNIGKVLEQDLIKAGIKTPAELKDVGSKEAFLRIWENDSSVCLSELCALEGAVQGIRWHDLDEAKKSELKKFHQSL
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20--....---....30-........--------40..-.....---.50..----......60..--......70..-......80..----------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MA
N
L
S
ELP
N
I
G
K
V
L
E
Q
D
L
I
K
A--GIKT---
P
A
E
L
K
D-VGS
K
E
A
F
L
--------
R
IWE-ND
S
S
V
---
C
L
S
E
L
----
C
A
L
E
G
A
VQGI--RWH
D
L
D
E
A
K
K
-
S
E
L
K
K
F
H
QSL----------------------------------------------------------------------------------------------------------------------
21
HHSearch
88.78
93%
-79
- C5 -
3MAB
-
?
A:
[3-85]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
N
L
S
E
L
P
N
I
G
K
V
L
E
Q
D
L
I
K
A
--
G
I
K
T
---
P
V
E
L
K
D
-
V
G
S
K
E
A
F
L
--------
R
I
W
E
-
N
D
S
S
V
---
C
M
S
E
L
----
Y
A
L
E
G
A
V
Q
G
I
--
R
W
H
G
L
D
E
A
K
K
-
I
E
L
K
K
F
H
Q
S
L
----------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
88.55
92%
-79
- C5 -
3MAB
-
?
A:
[3-85]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
N
L
S
E
L
P
N
I
G
K
V
L
E
Q
D
L
I
K
A
--
G
I
K
T
---
P
V
E
L
K
D
-
V
G
S
K
E
A
F
L
--------
R
I
W
E
-
N
D
S
S
V
---
C
M
S
E
L
----
Y
A
L
E
G
A
V
Q
G
I
--
R
W
H
G
L
D
E
A
K
K
-
I
E
L
K
K
F
H
Q
S
L
----------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
73.69
92%
-31
- C5 -
3BQT
-
?
A:
[5-85]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
L
S
E
L
P
N
I
G
K
V
L
E
Q
D
L
I
K
A
--
G
I
K
T
---
P
V
E
L
K
D
-
V
G
S
K
E
A
F
L
--------
R
I
W
E
-
N
D
S
S
V
---
C
M
S
E
L
----
Y
A
L
E
G
A
V
Q
G
I
--
R
W
H
G
L
D
E
A
K
K
-
I
E
L
K
K
F
H
Q
S
L
----------------------------------------------------------------------------------------------------------------------
26
HHSearch
44.36
21%
-93
- C5 -
3PZP
3
POLK_HUMAN
A:
[338-398]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
P
I
R
K
V
S
G
I
G
K
V
T
E
K
M
L
K
A
L
--
G
I
I
T
---
C
T
E
L
Y
Q
-
Q
-
R
A
L
L
S
L
--------
L
F
S
E
-
T
-------
S
W
H
Y
F
----
L
H
I
S
L
G
L
G
S
T
--
H
L
T
R
---------------------------------------------------------------------------------------------------------------------------------------
55
Fugue
40.82
13%
-52
- C5 -
2AQ4
5
REV1_YEAST
A:
[1-434]
KRIVACDDPD
F
L
T
S
Y
F
A
H
S
R
L
H
H
L
S
A
W
K
A
N
L
K
D
K
F
L
N
E
N
I
HKY
T
K
I
T
DK
D
T
Y
I
I
F
H
I
D
F
D
CF
F
A
T
V
A
Y
L
C
RSSSFSACDFKR
D
P
I
V
V
C
HGTKNSDIASCN
Y
V
A
R
S
Y
GIKNGMW
V
S
Q
A
E
K
M
LPNG
I
K
L
I
S
L
P
Y
T
F
E
Q
F
Q
L
K
S
E
A
F
Y
S
T
L
K
R
L
NIFN
L
I
L
P
ISID
E
A
V
C
V
R
I
I
P
DT
L
N
A
R
L
C
E
E
I
R
Q
E
I
F
Q
G
T
NG
C
T
V
S
I
G
C
SDS
L
V
L
A
R
L
A
L
K
M
A
KPN
G
Y
N
I
T
F
KSNLS
E
E
F
W
S
S
F
K
L
D
D
L
P
G
V
G
H
S
T
L
S
R
L
E
S
T
F
D
S
P
H
S
---
L
N
D
L
R
K
-
R
Y
T
L
D
A
L
K
--------
A
S
V
G
-
S
K
L
G
M
---
K
I
H
L
A
----
L
--
Q
G
Q
D
D
E
E
--
S
L
K
I
L
Y
D
P
K
E
-
V
L
Q
R
K
S
L
S
I
D
I
NWGIRFKN
I
T
Q
V
D
L
F
I
E
R
G
C
Q
Y
L
L
E
K
L
N
E
I
NKTTS
Q
I
T
L
K
L
M
R
RCKDAPIEPPKYMGM
G
R
C
D
S
F
S
R
S
S
R
L
GIPTNE
F
G
I
I
A
T
E
M
K
S
L
Y
R
T
L
GCPPMELR
G
L
A
L
Q
F
N
K
L
V
D
V------
23
HHSearch
40.82
18%
-57
- C5 -
3GQC
-
REV1_HUMAN
A:
[644-705]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
L
V
T
N
L
P
G
V
G
H
S
M
E
S
K
L
A
S
L
--
G
I
K
T
---
C
G
D
L
Q
Y
-
M
T
M
A
K
L
Q
K
--------
E
F
G
P
K
T
G
--------
Q
M
L
----
Y
R
F
C
R
G
L
D
D
R
--
P
V
R
T
---------------------------------------------------------------------------------------------------------------------------------------
45
HHSearch
39.94
16%
-46
- C5 -
2VA8
-
HELS_SULS9
A:
[658-695]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
V
Q
I
S
G
V
G
R
K
R
A
R
L
L
Y
N
N
--
G
I
K
E
---
L
G
D
V
V
--
M
N
P
D
K
V
K
N
--------
L
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
39.13
17%
-43
- C5 -
3OSN
2
POLI_HUMAN
A:
[235-300]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
I
K
E
I
P
G
I
G
Y
K
T
A
K
C
L
E
A
L
--
G
I
N
S
---
V
R
D
L
Q
T
-
F
S
P
K
I
L
E
K
--------
E
L
G
I
S
V
A
--------
Q
R
I
----
Q
K
L
S
F
G
E
D
N
S
--
P
V
I
L
---------------------------------------------------------------------------------------------------------------------------------------
34
HHSearch
38.68
24%
-57
- C5 -
1Z3E
-
B:
[9-45]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
I
E
E
L
-
D
L
S
V
R
S
Y
N
C
L
K
R
A
--
G
I
N
T
---
V
Q
E
L
A
N
-
K
T
E
E
D
M
M
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
42
HHSearch
38.57
23%
-76
- C5 -
2A1J
-
A:
[4-38]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
F
L
L
K
M
P
G
V
N
A
K
N
C
R
S
L
M
H
---
H
V
K
N
---
I
A
E
L
A
A
-
L
S
Q
D
E
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
HHSearch
38.17
22%
-44
* C5 *
2I1Q
-
RADA_METVO
A:
[5-49]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
D
L
P
G
V
G
P
S
T
A
E
K
L
V
E
A
--
G
Y
I
D
---
F
M
K
I
A
T
-
A
T
V
G
E
L
T
D
--------
I
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
HHSearch
37.31
13%
-61
- C5 -
2BCQ
2
A:
[98-127]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
S
N
I
W
G
A
G
T
K
T
A
Q
M
W
Y
Q
Q
--
G
F
R
S
---
L
E
D
I
R
S
-
Q
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
HHSearch
37.01
24%
-58
- C5 -
3GFK
-
RPOA_BACSU
B:
[251-287]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
I
E
E
L
-
D
L
S
V
R
S
Y
N
C
L
K
R
A
--
G
I
N
T
---
V
Q
E
L
A
N
-
K
T
E
E
D
M
M
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
HHSearch
36.39
20%
-49
- C5 -
1PZN
-
RADA_PYRFU
A:
[35-89]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
S
I
E
D
L
P
G
V
G
P
A
T
A
E
K
L
R
E
A
--
G
Y
D
T
---
L
E
A
I
A
V
-
A
S
P
I
E
L
K
E
--------
V
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
49
Fugue
36.01
30%
-84
- C1 -
4FDW
19
?
A:
[21-401]
----------------------------------------------------------------------ASLEDFSIEQLPAKTIYALGENIDLTG
L
N
V
T
G
K
Y
DDG
K
Q
R
P
V
K
V
T
SEQISGFSSSVPVD
K
Q
E
V
T
I
T
I
EG
K
Q
K
S
F
S
V
H
I
S
P
V
R
V
E
NGVLT
E
I
L
K
GYN
E
I
I
L
P
NSVKSIPKDAFRNSQIA
K
V
V
L
N
EGLK
S
I
G
D
MAFFNSTVQ
E
I
V
F
P
STLE
Q
L
K
E
DIFYYCYNLK
K
A
D
L
S
K
T
K
-
I
T
K
L
P
A
S
T
F
V
Y
A
--
G
I
E
E
V
L
L
P
V
T
L
K
E
-
I
G
S
-
Q
A
F
L
KTSQLK
T
I
E
I
P
E
-
N
V
S
T
I
GQE
A
F
R
E
S
GIT
T
V
K
L
P
N
G
V
T
N
I
--
A
S
R
A
F
Y
Y
C
P
E
L
A
E
V
T
T
Y
G
S
T
F
NDDPEAMIHPYCLEGCPKLA
R
F
E
I
P
ESIR
I
L
G
Q
GLLGGNRKVT
Q
L
T
I
P
ANVTQINFSAFNNTGIK
E
V
K
V
EGTTPPQVFEKVWYGFPDDIT
V
I
R
V
P
AES
V
E
K
Y
K
N
AN
G
W
R
D
F
T
NKITTF
43
HHSearch
35.60
23%
-35
- C5 -
2W9M
-
?
A:
[98-131]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
L
G
V
R
G
L
G
P
K
K
I
R
S
L
W
L
A
--
G
I
D
S
---
L
E
R
L
R
E
-
A
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
34.42
10%
-53
- C5 -
2AQ4
2
A:
[241-304]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
K
L
D
D
L
P
G
V
G
H
S
T
L
S
R
L
E
S
T
F
D
S
P
H
S
---
L
N
D
L
R
K
R
Y
T
L
D
A
L
K
A
--------
S
V
G
S
K
L
G
--------
M
K
I
----
H
L
A
L
Q
G
Q
D
D
E
--
E
S
L
----------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
34.04
31%
-115
- C7 -
2ZYI
2
?
A:
[379-416]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
Y
V
-
N
G
V
N
V
---
C
T
E
R
I
----
C
P
I
E
R
A
V
N
G
L
--
W
V
F
D
R
G
A
D
G
K
-
S
D
L
D
R
---------------------------------------------------------------------------------------------------------------------------
51
Fugue
33.78
22%
-26
- C5 -
2A3D
-
?
A:
[1-73]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
S
W
A
E
F
K
Q
R
L
A
A
I
K
T
R
L
Q
A
L
--
G
---------------
G
S
E
A
E
L
--------
A
A
F
E
-
K
E
I
A
A
---
F
E
S
E
L
----
Q
A
Y
K
G
K
G
N
P
E
V
E
A
L
R
K
E
A
A
A
I
R
-
D
E
L
Q
A
Y
R
H
N
-----------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
33.64
31%
-118
* C7 *
2ZYH
2
?
A:
[379-416]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
Y
V
-
N
G
V
N
V
---
C
T
E
R
I
----
C
P
I
E
R
A
V
N
G
L
--
W
V
F
D
R
G
A
D
G
K
-
S
D
L
D
R
---------------------------------------------------------------------------------------------------------------------------