@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo2803: (2016-04-07 )
MDKQRQLLLKIENLEDDFNRKRRQLDEAMDEASQEKWRFHQELENLSEQIRYIYQKRDYDASEDLPKAYHLISSIQEEGEWMVKNAVTHLENESEEHQTLYKKQVTAYEEELHQLKKERD
Atome Classification :
(20 SA)
---------------------------------.........10....------....20.....---...30........40---.........50.......---------.60....-...--------.70...-----......-80..---.....--.90---------------........100.......110.......120-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------MD
K
Q
R
Q
L
L
L
K
IEN
L
E
------
D
D
F
N
R
K
R
R
Q
L
D
---
E
A
M
D
E
A
S
Q
E
K
W
R
F
H
----
Q
E
L
E
N
L
S
E
Q
I
R
Y
I
Y
Q
KRD---------YDA
S
E
D
L
-
P
K
A
--------
Y
H
-
L
I
S
-----
S
I
Q
EEG-
E
W
M
V
---
K
N
A
V
T
--HLE---------------NE
S
E
E
H
Q
T
L
Y
K
K
Q
V
T
A
Y
E
E
E
L
H
Q
L
K
KERD---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
75.87
23%
-10
- C3 -
1Y1L
3
?
A:
[9-124]
---------------------------------------------------------
N
T
A
R
S
V
M
A
---
E
A
L
F
N
A
M
A
K
S
W
K
A
E
S
A
G
V
E
K
A
E
R
V
D
E
T
V
K
R
L
L
A
E
R
G
---------
L
K
A
K
E
K
--
P
R
T
VDEVNLDD
F
D
-
L
I
V
-----
T
V
C
E
E
S
-
S
C
V
V
L
PT
D
K
P
V
T
R
W
H
I
E
---------------
N
P
A
G
K
D
E
G
T
Y
R
R
V
L
A
E
I
E
E
R
V
K
K
L
V
G
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
46
Fugue
67.43
14%
-25
- C2 -
3R6N
2
DESP_HUMAN
A:
[1-450]
SGWD
E
F
T
K
H
V
T
S
E
C
L
G
W
M
R
Q
Q
R
A
E
M
D
M
V
A
W
G
VD
L
A
S
V
E
Q
H
I
N
S
H
R
G
I
H
------
N
S
I
G
D
Y
R
W
Q
L
D
---
K
I
K
A
D
L
R
E
-----
K
----
S
A
I
Y
Q
L
E
E
E
Y
E
N
L
L
K
A
S
F
----------
E
R
M
D
H
L
-
R
Q
L
--------
Q
N
-
I
I
Q
-----
A
T
S
R
E
I
-
M
W
I
N
---
D
C
E
E
E
--
E
L
L
---------------
Y
D
W
S
D
K
N
T
N
I
A
Q
K
Q
E
A
F
S
I
R
M
S
Q
L
E
V
K
E
K
E
L
N
K
L
K
Q
E
S
D
Q
L
V
L
N
QHPA
S
D
K
I
E
A
Y
M
D
T
L
Q
T
Q
W
S
W
I
L
Q
I
T
K
C
I
D
V
H
L
K
E
N
A
A
Y
F
Q
F
F
E
E
A
Q
S
T
E
A
Y
L
K
G
L
Q
D
S
I
R
K
K
Y
PCDKNMP
L
Q
H
L
L
E
Q
I
K
E
L
E
K
E
R
E
K
I
L
E
Y
K
R
Q
V
Q
N
L
V
N
K
S
K
K
I
V
Q
L
KPRNPDYRSN
K
P
I
I
L
R
A
L
C
D
Y
K
Q
DQ
K
I
V
H
KG
D
E
C
I
L
K
D
NNERSKWYVTGPGG
V
D
M
L
V
P
SVG
L
I
I
P
P
PN
P
L
A
V
D
L
S
C
K
I
E
Q
Y
Y
E
A
I
L
A
L
W
N
Q
L
Y
I
N
M
K
S
L
V
S
W
H
Y
C
M
I
D
I
E
K
I
R
A
MT
I
A
K
L
K
T
M
RQE
D
Y
M
K
T
I
A
D
L
E
L
H
Y
Q
E
F
I
R
N
S
Q
GSEMFG
D
D
D
K
R
K
I
Q
S
Q
F
T
D
A
Q
K
H
Y
Q
T
L
V
I
Q
LP
14
PsiBlast_PDB
66.00
30%
-18
- C3 -
4OXR
1
?
A:
[95-163]
--------------------------------------------------------------------------------------------
S
K
N
V
K
P
I
Y
L
K
Q
G
---------
E
K
S
E
H
N
I
D
P
H
A
--------
W
L
-
S
L
G
-----
N
----
G
-
I
E
Y
V
---
K
T
I
K
S
--
A
L
E
---------------
N
A
D
K
T
H
A
K
D
Y
D
K
Q
G
T
E
Y
L
S
K
L
E
K
L
N
K
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
65.14
30%
-20
- C3 -
4OXQ
1
?
A:
[95-163]
--------------------------------------------------------------------------------------------
S
K
N
V
K
P
I
Y
L
K
Q
G
---------
E
K
S
E
H
N
I
D
P
H
A
--------
W
L
-
S
L
G
-----
N
----
G
-
I
E
Y
V
---
K
T
I
K
S
--
A
L
E
---------------
N
A
D
K
T
H
A
K
D
Y
D
K
Q
G
T
E
Y
L
S
K
L
E
K
L
N
K
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
42
Fugue
60.81
16%
4
- C2 -
2HX6
-
REGB_BPT4
A:
[1-153]
---------------------------------
M
T
I
N
T
E
V
F
I
R
R
N
K
L
R
------
R
H
F
E
S
E
F
R
Q
I
N
---
N
E
I
R
E
A
S
K
A
A
G
V
S
S
----
F
H
L
K
Y
S
Q
A
L
L
D
R
A
I
Q
R
E
I
DE
T
Y
V
F
E
L
F
H
K
I
K
D
H
V
-
L
E
V
--------
N
E
-
F
L
S
MPPRP
D
I
D
E
D
F
-
I
D
G
V
---
E
Y
R
P
G
--
R
L
E
I
T
D
GNLW
L
G
F
T
V
CKP
N
E
K
F
K
D
P
S
L
Q
C
R
M
A
I
I
N
S
R
R
L
P
G
K
A
S
K
A
V
I
K
TQ-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
50
Fugue
57.05
17%
9
- C2 -
1JYO
-
SICP_SALTY
A:
[1-130]
---------------------------------
L
Q
A
H
Q
D
I
I
A
N
I
G
E
K
L
GLP
L
T
F
D
D
N
N
Q
C
L
L
L
L
D
SD
I
F
T
S
I
E
A
K
D
D
I
W
L
L
N
----
G
M
I
I
P
L
S
P
V
C
G
D
S
I
W
R
Q
I
---------
M
V
I
N
G
E
L
-
A
A
N
--------
N
E
G
T
L
A
-----
Y
I
D
A
A
E
-
T
L
L
L
---
I
H
A
I
T
--
D
L
T
---------------
N
--
T
Y
H
I
I
S
Q
L
E
S
F
V
N
Q
Q
E
A
L
K
N
I
L
Q
E
Y
A
KV-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
56.53
31%
18
- C3 -
1DTN
2
MANR_PSEPU
A:
[195-238]
-------------------------------------------------------------------------------------------------------
D
---------
Y
N
Q
S
L
D
V
-
P
A
A
--------
I
K
-
R
S
Q
-----
A
L
Q
Q
E
G
V
T
W
I
E
---
E
P
T
L
Q
--
H
------------------
D
Y
E
G
H
Q
R
I
Q
S
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
56.20
33%
-60
- C3 -
1LDJ
-
CUL1_HUMAN
A:
[287-332]
--------------------------------------------------------------------------------
F
H
----
T
E
F
Q
N
L
----------
L
D
---------
A
D
K
N
E
D
L
-
G
R
M
--------
Y
N
-
L
V
S
-----
R
I
Q
D
G
L
-
G
E
L
K
---
K
L
L
E
T
--
H
I
H
---------------
N
Q
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
56.04
31%
17
- C3 -
1MDR
2
MANR_PSEPU
A:
[195-238]
-------------------------------------------------------------------------------------------------------
D
---------
Y
N
Q
S
L
D
V
-
P
A
A
--------
I
K
-
R
S
Q
-----
A
L
Q
Q
E
G
V
T
W
I
E
---
E
P
T
L
Q
--
H
------------------
D
Y
E
G
H
Q
R
I
Q
S
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
55.56
31%
21
- C3 -
1MNS
2
MANR_PSEPU
A:
[193-236]
-------------------------------------------------------------------------------------------------------
D
---------
Y
N
Q
S
L
D
V
-
P
A
A
--------
I
K
-
R
S
Q
-----
A
L
Q
Q
E
G
V
T
W
I
E
---
E
P
T
L
Q
--
H
------------------
D
Y
E
G
H
Q
R
I
Q
S
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
55.53
33%
-44
- C3 -
1U6G
-
?
A:
[303-353]
--------------------------------------------------------------------------------
F
H
----
T
E
F
Q
N
L
----------
L
D
---------
A
D
K
N
E
D
L
-
G
R
M
--------
Y
N
-
L
V
S
-----
R
I
Q
D
G
L
-
G
E
L
K
---
K
L
L
E
T
--
H
I
H
---------------
N
Q
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
55.51
31%
25
- C3 -
1MDL
2
MANR_PSEPU
A:
[195-238]
-------------------------------------------------------------------------------------------------------
D
---------
Y
N
Q
S
L
D
V
-
P
A
A
--------
I
K
-
R
S
Q
-----
A
L
Q
Q
E
G
V
T
W
I
E
---
E
P
T
L
Q
--
H
------------------
D
Y
E
G
H
Q
R
I
Q
S
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
55.39
33%
-38
- C3 -
1LDK
-
CUL1_HUMAN
A:
[289-334]
--------------------------------------------------------------------------------
F
H
----
T
E
F
Q
N
L
----------
L
D
---------
A
D
K
N
E
D
L
-
G
R
M
--------
Y
N
-
L
V
S
-----
R
I
Q
D
G
L
-
G
E
L
K
---
K
L
L
E
T
--
H
I
H
---------------
N
Q
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
PsiBlast_CBE
55.21
31%
17
- C3 -
3UXK
2
MANR_PSEPU
D:
[219-262]
-------------------------------------------------------------------------------------------------------
D
---------
Y
N
Q
S
L
D
V
-
P
A
A
--------
I
K
-
R
S
Q
-----
A
L
Q
Q
E
G
V
T
W
I
E
---
E
P
T
L
Q
--
H
------------------
D
Y
E
G
H
Q
R
I
Q
S
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
55.14
31%
21
- C3 -
1MRA
2
MANR_PSEPU
A:
[195-238]
-------------------------------------------------------------------------------------------------------
D
---------
Y
N
Q
S
L
D
V
-
P
A
A
--------
I
K
-
R
S
Q
-----
A
L
Q
Q
E
G
V
T
W
I
E
---
E
P
T
L
Q
--
H
------------------
D
Y
E
G
H
Q
R
I
Q
S
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
PsiBlast_CBE
54.95
31%
23
- C3 -
3UXL
2
MANR_PSEPU
D:
[219-262]
-------------------------------------------------------------------------------------------------------
D
---------
Y
N
Q
S
L
D
V
-
P
A
A
--------
I
K
-
R
S
Q
-----
A
L
Q
Q
E
G
V
T
W
I
E
---
E
P
T
L
Q
--
H
------------------
D
Y
E
G
H
Q
R
I
Q
S
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
PsiBlast_CBE
54.94
31%
24
- C3 -
3UXL
2
MANR_PSEPU
C:
[219-262]
-------------------------------------------------------------------------------------------------------
D
---------
Y
N
Q
S
L
D
V
-
P
A
A
--------
I
K
-
R
S
Q
-----
A
L
Q
Q
E
G
V
T
W
I
E
---
E
P
T
L
Q
--
H
------------------
D
Y
E
G
H
Q
R
I
Q
S
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
54.81
31%
22
- C3 -
2MNR
2
MANR_PSEPU
A:
[193-236]
-------------------------------------------------------------------------------------------------------
D
---------
Y
N
Q
S
L
D
V
-
P
A
A
--------
I
K
-
R
S
Q
-----
A
L
Q
Q
E
G
V
T
W
I
E
---
E
P
T
L
Q
--
H
------------------
D
Y
E
G
H
Q
R
I
Q
S
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
54.65
31%
15
- C3 -
3UXL
2
MANR_PSEPU
A:
[219-262]
-------------------------------------------------------------------------------------------------------
D
---------
Y
N
Q
S
L
D
V
-
P
A
A
--------
I
K
-
R
S
Q
-----
A
L
Q
Q
E
G
V
T
W
I
E
---
E
P
T
L
Q
--
H
------------------
D
Y
E
G
H
Q
R
I
Q
S
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
PsiBlast_CBE
54.43
31%
18
- C3 -
3UXL
2
MANR_PSEPU
B:
[219-262]
-------------------------------------------------------------------------------------------------------
D
---------
Y
N
Q
S
L
D
V
-
P
A
A
--------
I
K
-
R
S
Q
-----
A
L
Q
Q
E
G
V
T
W
I
E
---
E
P
T
L
Q
--
H
------------------
D
Y
E
G
H
Q
R
I
Q
S
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------