@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs0005: (2015-11-27 )
MDNLIRLAEIFDVSLDEHVLAKTNEVKVERIYENKPLDLRKYNKIYWFIFRNIIRSLLIILAILTFL
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10.-----.....--.-----.20.-.....------..30-----.......-------..40---.------........50........60......--------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MD
N
L
I
R
L
A
E
I
FD-----VSL
D
E
--
H
-----
V
LAK-TN
E
V
K
------
V
E
R
------IYENKPL-------
D
L
R
----
K
------YN
K
I
Y
W
F
I
F
R
N
I
I
R
S
L
L
I
I
L
A
I
L
TFL--------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
65.69
26%
-55
- C1 -
1SKV
-
D63_SSV1
A:
[2-65]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
K
E
V
L
E
K
E
L
F
E
M
----
L
D
E
D
V
--
R
-----
E
L
L
S
L
I
H
E
I
K
------
I
D
R
------
I
T
G
N
M
---------
D
K
Q
----
K
------
L
G
K
A
Y
-
F
Q
V
Q
K
I
E
A
E
L
Y
Q
L
I
K
V
S
H
H
---------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
61.25
22%
-70
- C1 -
2KXG
-
?
A:
[1-95]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GPGPAI
G
E
V
I
G
I
S
V
N
D
P
R
V
K
E
I
A
E
-----
F
A
L
K
Q
--
H
AEQ
N
L
I
L
A
G
-
V
D
A
G
Q
------
I
I
K
G
IPHWD
N
Y
Y
N
L
I
L
-------
S
A
K
HSPH
E
------
F
S
K
F
Y
N
V
V
V
L
E
K
A
S
D
N
S
L
K
L
V
A
F
V
P
L
F-------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
60.45
29%
-152
- C2 -
3IVP
-
?
A:
[55-78]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
V
L
Y
D
L
V
S
L
L
N
-----
V
S
V
D
E
--
F
-----
F
L
P
A
-
S
S
Q
V
K
------
S
T
K
------
R
R
Q
L
E
N
K
-------
I
D
N
----
F
------
T
D
A
D
L
V
I
M
E
S
V
A
D
G
I
V
K
S
K
E
V
G
E
-----------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
50.96
30%
-118
- C3 -
2ZB6
2
HEMA_MEASE
A:
[12-462]
VA
A
E
E
L
M
NALSK
G
N
C
S
G
P
T
T
I
R
G
Q
F
S
NMSLS
L
L
D
L
Y
L
G
R
GYNVSS
I
V
T
M
T
S
QG
M
Y
G
G
T
Y
L
V
E
K
P
N
LSQ
L
S
M
Y
R
V
F
E
V
G
V
IRNPGLG
A
P
V
F
H
M
T
N
Y
L
E
Q
P
V
SNDL
S
N
C
M
V
A
L
G
EL
K
L
A
A
L
C
H
GED
S
I
T
I
P
Y
QGS
G
K
G
V
S
F
Q
L
V
K
L
G
VWKSPT
D
M
Q
S
W
V
P
L
S
TDDPVI
D
R
L
Y
L
S
S
H
R
G
V
I
A
DN
Q
A
K
W
A
V
P
T
T
R
TDDKLRM
E
T
C
F
Q
Q
A
C
K
G
KI
Q
A
L
C
E
NPEW
A
P
L
K
D
N
--
R
I
P
S
Y
G
V
-----
L
S
V
D
----------
L
S
L
-
T
V
E
L
K
------
I
K
I
------
A
S
G
F
G
P
L
ITHGS
G
M
D
L
Y
----
K
S
N----
H
N
N
V
Y
W
L
T
I
P
P
M
K
N
L
A
L
G
V
I
N
T
L
E
W
I
P
R
F
K
V
S
P
Y
L
F
T
V
P
I
K
EAGGD
C
H
A
P
T
Y
L
P
A
EVDG
D
V
K
L
S
S
N
L
V
I
L
P
GQ
D
L
Q
Y
V
L
A
T
Y
D
TSRVE
H
A
V
V
Y
Y
V
Y
S
PS
R
S
F
S
Y
F
YPF
R
L
P
I
K
G
V
P
I
E
L
Q
V
E
C
F
T
W
DQ
K
L
W
C
R
H
F
C
V
L
A
D
SES
G
G
H
I
T
H
S
G
M
V
G
M
G
V
S
C
T
25
Fugue
50.47
14%
-109
* C3 *
2GRG
-
YN034_YEAST
A:
[1-98]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
S
S
I
P
I
T
E
V
L
P
R
AV
G
S
L
T
F
D
E
NY
N
-----
L
L
D
T
-
S
G
V
A
K
VIEKSP
I
A
E
------
I
I
R
K
S
N
A
-------
E
L
G
----
R
------
L
G
Y
S
V
Y
E
D
A
Q
Y
I
G
H
A
F
K
K
A
G
H
F
I
V
Y
F
T
PKNKNREG
V
V
P
P
VGITN--------------------------------------------------------------------------------------------------------------------
2
HHSearch
47.90
13%
-64
- C2 -
3FYM
-
?
A:
[52-75]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
F
I
R
K
Y
A
S
V
V
N
-----
I
E
P
N
Q
--
L
-----
I
Q
A
H
-
Q
D
E
I
P
------
S
N
Q
------
A
E
W
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
47.70
23%
-74
- C2 -
3QQ6
-
SINR_BACSU
A:
[45-66]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
F
L
E
K
V
S
A
V
L
D
-----
V
S
V
H
T
--
L
-----
L
D
E
K
-
H
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
47.63
29%
-41
- C2 -
1R69
-
RPC1_BP434
A:
[44-63]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
L
P
E
L
A
S
A
L
G
-----
V
S
V
D
W
--
L
-----
L
N
G
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
47.57
27%
-74
- C2 -
2OFY
-
?
A:
[58-79]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
T
I
A
A
V
A
R
V
L
D
-----
L
S
L
D
D
--
V
-----
A
A
V
V
-
T
F
G
P
V
------
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
47.13
30%
-64
- C2 -
3BDN
1
RPC1_LAMBD
A:
[60-82]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
N
A
A
L
L
A
K
I
L
K
-----
V
S
V
E
E
--
F
-----
S
P
S
I
-
A
R
E
I
Y
------
E
M
Y
------
E
A
V
S
M
Q
P
-------
S
L
R
----
S
------
E
Y
E
Y
P
V
F
S
H
V
Q
A
G
M
F
S
P
E
L
R
T
F
T
K
G
D
--------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
46.36
24%
-84
- C2 -
3OMT
-
?
A:
[51-71]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
T
L
F
D
I
A
E
A
L
N
-----
V
D
V
R
E
--
L
-----
I
V
S
T
-
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
46.12
10%
-54
- C2 -
2XI8
-
?
A:
[45-64]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
L
K
I
A
Y
Y
L
N
-----
T
P
L
E
D
--
I
-----
F
Q
W
Q
-
P
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
44.32
80%
-4
- C2 -
2GB3
-
?
A:
[44-58]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
-
T
P
E
V
F
------
F
E
R
------
I
Y
E
N
K
P
E
-------
V
V
Y
----
Y
------
S
H
S
A
G
I
W
E
L
R
E
A
F
A
S
Y
Y
K
R
R
Q
R
V
D
V
K
--------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
40.66
11%
-73
- C1 -
1C0V
-
ATPL_ECOLI
A:
[1-79]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
N
L
N
M
D
L
L
Y
M
A
-----
A
A
V
M
M
--
G
-----
L
A
A
I
-
G
A
A
I
G
------
I
G
I
------
L
G
G
K
F
L
E
-------
G
A
A
----
R
Q
PDL
I
P
L
L
R
T
Q
F
F
I
V
M
G
L
V
D
A
I
P
M
I
A
V
G
L
G
L
Y
V
M
F
A
VA--------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
40.40
9%
-68
- C2 -
2B5A
1
?
A:
[53-74]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
N
I
H
K
I
C
A
A
L
D
-----
I
P
A
S
T
--
F
-----
F
R
K
M
-
E
E
E
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
39.56
14%
-74
- C2 -
2EF8
-
?
A:
[57-78]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
L
E
V
V
A
S
R
L
G
-----
L
P
M
D
I
--
L
-----
L
K
D
T
-
Y
E
S
I
S
------
K
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
37.59
23%
-37
- C2 -
1ADR
-
RPC2_BPP22
A:
[48-69]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
N
L
L
A
L
S
K
A
L
Q
-----
C
S
P
D
Y
--
L
-----
L
K
G
D
-
L
S
Q
T
N
------
V
A
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
35.87
17%
-23
* C2 *
2O38
1
?
A:
[84-107]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
R
L
M
T
L
L
N
A
L
D
-----
Q
D
V
E
I
--
V
-----
I
R
K
K
-
P
R
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
35.57
9%
-48
- C2 -
1ZUG
-
RCRO_BP434
A:
[45-67]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
F
L
F
E
I
A
M
A
L
N
-----
C
D
P
V
W
--
L
-----
Q
Y
G
T
-
K
R
G
K
A
------
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
35.09
13%
-32
- C2 -
3QWG
-
ESPR_MYCTU
A:
[60-82]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
T
M
A
A
L
A
N
F
F
R
-----
I
K
A
A
Y
--
F
-----
T
D
D
E
-
Y
Y
E
K
L
------
D
K
E
------
L
Q
W
L
C
T
M
-------
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------