@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs0133: (2015-11-28 )
MKKCFLAICLALSFFMVSVQADEVDYNIPHYEGNLTIHNDNSADFTEKVTYQFDSSYNGQYVTLGTAGKLPDNFDINNKPQVEVSINGKVRKVSYQIEDLEDGYRLKVFNGGEAGDTVKVNVQWKLKNVLFMHKDVGELNWIPISDWDKTLEKVDFWISTDKKVALSRLWGHLGYLKTPPKIRQNNNRYHLTAFNVNKRLEFHGYWDRSYFNLPTNSKNNYKKKIEHQEKMIERHGFILSFLLRILLPSFFIIVTLFISIRVFLFRKKVNKYGQFPKDHHLYEAPEDLSPLELTQSIYSMSFKNFQDEEKKTHLISQEQLIQSILLDLIDRKVLNYDDNLLSLANLDRASDAEIDFIEFAFADSTSLKPDQLFSNYQFSYKETLRELKKQHKASDLQTQMRRRGSNALSRITRLTRLISKDNINSLRSKGISSPYRKMSSEESKELSRLKRFSYLSPLISFVVIIYTLFLNYFTYFCIYLLLFVVILLLNKIIFMMTRKISNGYIVTEDGASRIYQWTSFRNMLRDIKSFDRSELESIVLWNRILVYATLFGYADRVEKVLRVNQIDIPERFANIDSHRFAISVNQSSNHFSTITEDVSHASNFSVNSGGSSGGFSGGGGGGAF
Atome Classification :
(20 SA)
.........10........20........30...---.....40........50........60........70........80--........90.........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400--........410.....----------..420.......430.......440.......450.......460.......470.......480.......490.......500.......510.......520.......530.......540.......550..-.....560.......570.......580.......590.......600.......610.......620..
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
M
K
K
C
F
L
A
I
C
L
A
L
S
F
F
M
V
S
V
QADEVDYNIPHYE
G
N
---
L
T
I
HNDNSADF
T
E
K
V
T
Y
Q
FDSSYNG
Q
Y
V
T
LGTAGKLPDNFDINNKP
Q
--
V
E
V
S
ING
K
V
-
R
K
V
S
Y
Q
I
EDLEDG
Y
R
L
K
V
F
NGGEAG
D
T
V
K
V
N
V
Q
W
K
LK
N
V
L
F
M
HKDVGELN
W
I
PI
S
D
W
D
K
T
L
E
K
V
D
F
W
ISTD
K
K
V
A
L
S
R
L
W
G
HLGYLKTPPKIRQNNN
R
Y
H
L
T
A
F
NVN
K
R
L
E
F
H
G
Y
WDR
S
Y
FNLPTNSKN
N
Y
K
K
K
I
E
H
Q
E
K
M
I
E
RH
G
F
I
L
S
F
L
L
R
I
L
L
P
S
F
F
I
I
V
T
L
F
I
S
I
R
V
F
L
F
R
K
K
V
N
K
YGQFPKDHHLYEAPEDL
S
P
L
E
L
T
Q
S
I
Y
S
M
S
FKNFQ
D
E
E
K
K
T
HLI
S
Q
E
Q
L
I
Q
S
I
L
L
D
L
I
D
R
K
VLNYDD
N
L
L
S
L
A
NLDRASDAE
I
D
F
I
E
F
A
FADSTSL
K
P
D
Q
L
F
S
NYQF
S
Y
K
E
T
L
R
E
L
K
K
Q
H
K
A
S
D
L
Q
T
Q
M
R
---
R
RG
S
N
A
L
S
R
I
T
R
L
T
R
L
----------
I
SKD
N
I
N
S
L
R
S
KGIS
S
P
Y
R
K
MS
S
E
E
S
K
E
L
S
R
L
K
R
F
S
Y
L
S
P
L
I
S
F
V
V
I
I
Y
T
L
F
L
N
Y
F
T
Y
F
C
I
Y
L
L
L
F
V
V
I
L
L
L
N
K
I
I
F
M
M
T
R
KISN
G
Y
I
V
TEDGA
S
R
I
Y
Q
W
T
S
F
R
N
M
L
R
D
I
K
SF
D
R
S
E
L
E
S
I
V
L
W
N
R
I
L
V
Y
A
T
L
F
G
Y
A
-
D
R
V
E
K
V
L
R
VNQID
I
P
E
R
F
ANIDS
H
R
F
A
I
S
VNQSSN
H
F
S
T
I
T
E
D
V
SHASN
F
S
VNSGGSSGGFSGGGGGGAF
6
PsiBlast_PDB
85.15
24%
116
- C9 -
3VXG
-
CPRC2_CANPA
A:
[250-327]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
T
L
K
R
L
A
E
K
Y
K
K
T
E
A
Q
V
L
L
R
Y
T
L
Q
R
G
I
L
P
V
T
T
S
S
K
E
S
R
L
K
E
S
L
NLFD
F
E
L
T
D
E
E
V
N
E
I
N
K
I
G
D
A
N
P
Y
R
A
F
F
H
E
Q
F
K
D
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
84.36
24%
108
- C9 -
4H8N
2
CPRC2_CANPA
A:
[233-310]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
T
L
K
R
L
A
E
K
Y
K
K
T
E
A
Q
V
L
L
R
Y
T
L
Q
R
G
I
L
P
V
T
T
S
S
K
E
S
R
L
K
E
S
L
NLFD
F
E
L
T
D
E
E
V
N
E
I
N
K
I
G
D
A
N
P
Y
R
A
F
F
H
E
Q
F
K
D
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
78.88
38%
237
- C9 -
2IA4
2
?
A:
[193-239]
----------------------------------------------------------------------
A
K
K
P
D
N
W
D
I
V
G
K
P
Q
--
S
Q
E
A
Y
G
C
M
L
-
R
K
D
D
P
Q
F
K
K
L
M
D
D
T
I
A
Q
V
Q
T
S
G
E
A
E
K
W
F
D
K
W
F
K
N
P
I
P
P
K
N
L
N
M
N
F
E
L
S
D
E
M
K
A
L
F
K
E
P
N
D
K
A
L
N
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
78.86
38%
231
- C9 -
2VHA
2
?
A:
[193-239]
----------------------------------------------------------------------
A
K
K
P
D
N
W
D
I
V
G
K
P
Q
--
S
Q
E
A
Y
G
C
M
L
-
R
K
D
D
P
Q
F
K
K
L
M
D
D
T
I
A
Q
V
Q
T
S
G
E
A
E
K
W
F
D
K
W
F
K
N
P
I
P
P
K
N
L
N
M
N
F
E
L
S
D
E
M
K
A
L
F
K
E
P
N
D
K
A
L
N
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_CBE
78.43
38%
234
- C9 -
2VHA
2
?
B:
[193-239]
----------------------------------------------------------------------
A
K
K
P
D
N
W
D
I
V
G
K
P
Q
--
S
Q
E
A
Y
G
C
M
L
-
R
K
D
D
P
Q
F
K
K
L
M
D
D
T
I
A
Q
V
Q
T
S
G
E
A
E
K
W
F
D
K
W
F
K
N
P
I
P
P
K
N
L
N
M
N
F
E
L
S
D
E
M
K
A
L
F
K
E
P
N
D
K
A
L
N
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
72.05
26%
36
- C9 -
3FF3
5
NALD2_HUMAN
A:
[498-553]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
T
D
K
Y
S
S
Y
P
V
Y
H
T
I
Y
E
T
------
F
E
L
V
E
K
F
Y
D
P
T
F
K
K
---------
Q
L
S
V
A
Q
L
R
G
A
L
V
Y
E
L
V
D
S
K
I
I
P
F
N
I
Q
D
Y
A
E
A
L
K
N
Y
A
A
S
I
Y
N
L
S
K
K
H
D
Q
Q
L
T
D
H
G
V
S
F
D
S
L
F
S
A
V
K
N
F
S
E
A
A
S
D
F
H
K
R
L
I
Q
V
D
L
N
N
P
I
A
---
V
R
M
M
N
D
Q
L
M
L
L
E
R
A
F
I
----------
D
P
L
G
L
P
G
K
L
F
Y
R
H
I
I
F
A
P
S
S
H
N
K
Y
A
G
E
S
F
P
G
I
Y
D
A
I
F
D
I
E
N
K
A
N
S
R
L
A
W
K
E
V
K
K
H
I
S
I
A
A
F
T
I
Q
A
A
A
G
T
L
K
E
V
---------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
71.83
26%
39
- C9 -
3FEC
5
NALD2_HUMAN
A:
[498-553]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
T
D
K
Y
S
S
Y
P
V
Y
H
T
I
Y
E
T
------
F
E
L
V
E
K
F
Y
D
P
T
F
K
K
---------
Q
L
S
V
A
Q
L
R
G
A
L
V
Y
E
L
V
D
S
K
I
I
P
F
N
I
Q
D
Y
A
E
A
L
K
N
Y
A
A
S
I
Y
N
L
S
K
K
H
D
Q
Q
L
T
D
H
G
V
S
F
D
S
L
F
S
A
V
K
N
F
S
E
A
A
S
D
F
H
K
R
L
I
Q
V
D
L
N
N
P
I
A
---
V
R
M
M
N
D
Q
L
M
L
L
E
R
A
F
I
----------
D
P
L
G
L
P
G
K
L
F
Y
R
H
I
I
F
A
P
S
S
H
N
K
Y
A
G
E
S
F
P
G
I
Y
D
A
I
F
D
I
E
N
K
A
N
S
R
L
A
W
K
E
V
K
K
H
I
S
I
A
A
F
T
I
Q
A
A
A
G
T
L
K
E
V
---------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
70.55
26%
38
- C9 -
3FED
4
NALD2_HUMAN
A:
[498-553]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
T
D
K
Y
S
S
Y
P
V
Y
H
T
I
Y
E
T
------
F
E
L
V
E
K
F
Y
D
P
T
F
K
K
---------
Q
L
S
V
A
Q
L
R
G
A
L
V
Y
E
L
V
D
S
K
I
I
P
F
N
I
Q
D
Y
A
E
A
L
K
N
Y
A
A
S
I
Y
N
L
S
K
K
H
D
Q
Q
L
T
D
H
G
V
S
F
D
S
L
F
S
A
V
K
N
F
S
E
A
A
S
D
F
H
K
R
L
I
Q
V
D
L
N
N
P
I
A
---
V
R
M
M
N
D
Q
L
M
L
L
E
R
A
F
I
----------
D
P
L
G
L
P
G
K
L
F
Y
R
H
I
I
F
A
P
S
S
H
N
K
Y
A
G
E
S
F
P
G
I
Y
D
A
I
F
D
I
E
N
K
A
N
S
R
L
A
W
K
E
V
K
K
H
I
S
I
A
A
F
T
I
Q
A
A
A
G
T
L
K
E
V
---------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
63.92
10%
57
- C6 -
4GKW
-
SAS6_CAEEL
A:
[250-407]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
D
K
E
D
E
V
A
D
L
K
Q
D
T
E
S
L
Q
K
Q
L
E
E
N
Q
E
E
L
E
I
V
G
N
M
L
R
E
E
Q
G
K
V
D
Q
L
Q
K
R
N
V
A
H
Q
K
E
I
G
K
L
R
A
E
L
G
T
A
Q
R
N
L
E
K
A
D
Q
L
L
K
R
N
S
Q
Q
Q
N
Q
Q
S
L
D
M
R
K
L
-
G
E
L
E
A
D
L
K
---
E
K
D
S
M
V
E
S
L
T
E
T
I
G
I
L
----------
R
K
E
L
E
N
E
K
L
K
A
A
E
N
M
D
S
F
E
K
L
S
M
E
N
E
N
L
K
E
K
I
A
H
Y
R
A
Q
R
F
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
54.98
14%
51
- C7 -
1F0Z
-
THIS_ECOLI
A:
[1-66]
-------------------------------------------------------
M
Q
I
L
F
N
D
Q
A
M
Q
C
A
A
G
Q
T
V
H
E
L
L
E
Q
L
D
Q
R
Q
A
G
A
A
L
A
I
N
Q
Q
I
V
P
R
E
Q
W
A
Q
H
I
V
Q
D
G
D
Q
I
L
L
F
Q
V
I
A
G
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
52.05
20%
742
- C9 -
2JO5
3
?
B:
[4-20]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
A
A
A
A
A
I
K
A
I
A
A
I
I
K
A
G
G
F
N
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
51.00
20%
752
- C9 -
2JO5
3
?
D:
[4-20]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
A
A
A
A
A
I
K
A
I
A
A
I
I
K
A
G
G
F
N
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
50.56
20%
762
* C9 *
2JO5
3
?
A:
[4-20]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
A
A
A
A
A
I
K
A
I
A
A
I
I
K
A
G
G
F
N
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
50.32
20%
735
- C9 -
2JO5
3
?
C:
[4-20]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
A
A
A
A
A
I
K
A
I
A
A
I
I
K
A
G
G
F
N
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
48.89
18%
336
* C8 *
2NOC
-
?
A:
[1-48]
M
K
T
G
Y
K
V
M
L
G
A
L
A
F
V
V
T
N
V
Y
A
A
---
E
I
M
K
K
T
D
F
D
K
V
A
S
E
Y
T
K
I
G
T
I
S
T
T
G
E
M
S
P
L
D
A
R
E
D
L
I
K
K
A
D
E
K
G
A
D
V
V
V
L
T
S
G
Q
T
E
N
K
I
--
H
G
T
A
D
I
Y
K
K
-
K
L
E
H
H
H
H
H
H
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
46.44
15%
752
- C9 -
2JO4
3
?
A:
[4-20]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
A
A
A
A
A
I
K
A
I
A
A
I
I
K
A
G
G
Y
N
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
42.52
18%
329
- C8 -
2JNA
-
?
A:
[1-45]
M
K
K
R
I
I
A
A
A
L
L
A
T
V
A
S
F
S
T
L
A
--
A
-
E
Q
V
S
K
Q
E
I
S
H
--
F
K
L
V
K
V
G
T
I
N
V
S
Q
S
G
G
Q
I
S
S
P
S
D
L
R
E
K
L
S
E
L
A
D
A
K
G
G
K
Y
Y
H
I
I
A
A
R
E
--
H
G
P
N
F
E
A
V
A
-
E
V
Y
N
D
A
T
K
L
E
H
H
H
H
H
H
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
40.20
54%
1349
- C5 -
2K7N
-
A:
[174-186]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
G
G
G
S
G
G
G
S
G
D
G
G
A
F
P
E
I
13
HHSearch
34.17
13%
391
- C9 -
2L6F
-
A:
[109-132]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
M
L
T
A
A
H
A
L
A
V
D
A
K
N
L
L
D
V
I
D
Q
A
R
L
K
M
I
S
Q
S
R
P
H
S
N
L
S
E
L
D
R
L
L
L
E
L
N
A
V
Q
H
N
P
P
S
S
A
T
R
E
L
D
E
L
M
A
S
L
S
D
------------
10
HHSearch
33.06
17%
621
- C9 -
2PK2
-
CCNT1_HUMAN (first)
A:
[81-92]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
S
V
A
P
A
A
L
F
L
A
A
K
V
E
E
Q
P
K
K
L
E
H
V
I
K
V
A
H
T
C
L
H
P
Q
E
S
L
P
D
T
R
S
E
A
Y
L
Q
Q
V
Q
D
L
V
I
L
E
S
I
I
L
Q
T
L
G
F
E
L
T
I
D
H
P
H
T
H
V
V
K
C
T
Q
L
---
V
R
A
S
K
D
L
A
Q
T
S
Y
F
M
A
T
----------
N
S
L
H
L
T
T
F
S
L
Q
Y
T
P
P
V
V
A
C
V
C
I
H
L
A
C
K
W
S
N
W
E
I
P
V
S
T
D
G
K
H
W
W
E
Y
V
D
A
T
V
T
L
E
L
L
D
E
L
T
H
E
F
L
Q
I
L
E
K
T
P
N
R
L
K
R
I
W
N
W
R
A
C
E
A
----------------------------------------------------------------------------------------------------------------------------