@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs0160: (2015-11-29 )
MTLRQVTLKNTHQTSGIDKWISWLKKDISVRNRHKSKKLSLKKQRKVVQLFNNLFASGFSLTDMVTFLKRSKLLSDYYTDRMNKALLEGKDLSKMLGELGFSDTVITQVALADLHGNISRSLLKIESYLANLLLVRKKVIEVATYPLILLTFLVLIMIGLRHYLMPQLGENNFATSLITNVPNIFLLLLAVVLIFSLIFYIVQKRLSRIKVACFLTTIPLVGSYVKLYLTAYYAREWGNLLSQGVELDQIVKVMQNQKSKLFREIGYDMEEGFLSGKAFHQKVLDYPFFLTELSLMIEYGQVKAKLGTELDIYADEKWEDFFTKLARATQLIQPVIFIFVALIIVMIYAAMLLPMYQNMEILS
Atome Classification :
(16 SA)
--.........10........20.....-----...30...-.....40......----..50.....-...60.-.......70--..--.--..-....80........90....----....---100---......----.-.110.-....-..120.-......130---........140..-.---....150.-----------------......160.......170.....-..180...-------------..---..190...---------....200.....----..---210.......220.-......230--------.........240.......250-.......-260---.-.......270---.......---..280.....-..290.......300.......310-.......320..-------------.....330..-----.....340.......350-------.........360.-------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--MT
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LKNTHQTS
G
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-----
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N
RH-KSKK
L
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L
K
K
Q
R
K
V
----
V
Q
L
F
N
N
L
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A-SGF
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-
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M
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---
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--
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-
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A
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LE
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K
M
----
L
G
EL---GF----S
D
T
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I
T
----
Q
-
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A
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A
D
-
L
H
G
N
-
I
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Y
L
A
N
----
L
L
L
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K
V
I
E
VA
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-
Y
---
P
L
I
L
L
T
F
L
-----------------
V
L
I
M
I
G
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Y
L
M
P
QLGENN
F
A
T
S
L
-
I
TNV
P
N
I
F
-------------
L
L
---
L
L
A
V
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F
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I
---
K
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S
-
Y
V
K
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Y
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----------
A
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Y
A
R
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SQGV
E
L
D
Q
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-
V
M
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N
Q
K
S
-
K
L
----
F
-
R
E
IG
Y
D
M
E
-----
E
G
FLS
G
K
---
A
F
H
Q
K
V
LDY
P
-
F
F
L
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M
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EY
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A
KLGT
E
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I
-YAD
E
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-------------
L
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-----
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M
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A
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---------
M
L
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P
M
Y
QNMEILS-------------------------------
16
Fugue
83.12
19%
-104
- C3 -
4UY5
2
EGTD_MYCS2
A:
[2-327]
------
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FEEHLGKIPHVGR
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G
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----
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---
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--------------------------
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-----
A
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G
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L
E
H
H
H
---------
H
-------------------------------------------
19
Fugue
77.74
17%
-103
- C3 -
4GA6
3
AMPPA_THEKO
A:
[1-493]
M
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LHPDD
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-----------------
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IDP
T
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KGVKVET
V
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A
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E
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M
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I
I
E
A
Q
GGDPNIKPEEIP
I
G
D
K
T
Y
T
F
T
A
A
T
S
G
Y
V
T
A
I
D
N
R
A
I
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A
I
A
R
A
A
GAPEDKG
A
G
I
E
L
Y
V
K
V
G
E
K
V
K
E
GDPL
F
T
I
H
A
EH
E
A
R
L
D
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A
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V
L
A
R
R
T
EPIRIE
14
Fugue
68.38
22%
-82
- C2 -
3W6S
2
?
A:
[19-243]
-------------------------------------------------------------------------------------------
S
--
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-
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K
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LIG
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-
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--
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T
-
Y
---
P
----
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NQD
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---------
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N
Y
A
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R
C
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----
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---
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-
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I
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DKLN
F
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H
-----
A
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N
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---
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-
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F
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M
E
-------------------------------------------------------------------------------------------------------------------------
4
HHSearch
62.94
18%
-56
- C4 -
3C1Q
5
GSPF_VIBCH
A:
[5-117]
------------------------------------------
F
K
R
G
I
S
T
P
D
L
A
L
I
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-
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M
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L
E
-
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---
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--
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I
-
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S
----
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PH-
V
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----
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----
M
-
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A
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-
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-
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Y
A
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N
----
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Q
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M
R
S
K
L
Q
Q
A
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
62.74
21%
-53
- C4 -
2WHN
-
?
A:
[54-162]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
I
P
A
L
E
R
-
G
P
G
L
K
D
L
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M
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A
G
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A
-
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----
F
-
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-----
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V
E
G
G
M
---
A
F
S
E
A
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H
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G
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-
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A
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F
L
E
K
E
L
E
L
R
-------------------------------------------------------------------------------------------------
5
HHSearch
61.57
18%
-55
- C4 -
2WHN
-
?
A:
[59-162]
-------------------------------------------
E
R
G
P
G
L
K
D
L
A
I
F
----
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R
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L
A
T
M
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A
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M
A
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K--
I
F
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V
N
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E
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S
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-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
55.08
19%
-43
- C4 -
3C1Q
5
GSPF_VIBCH
A:
[10-107]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
T
P
D
L
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A
L
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Q
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A
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R
----
I
-
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M
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A
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G
Y
---
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E
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K
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-------------
S
K
L
Q
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A
S
-----------------------------------------------------------------------------
22
Fugue
51.68
19%
-6
* C3 *
4HR1
-
?
A:
[3-120]
------------
F
N
G
A
Q
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V
I
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-----
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M
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----
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M
G
----
T
-
L
K
I
S
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-
Y
L
D
S
-
L
D
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
49.89
27%
-73
- C4 -
4CJA
1
BAT1_BURRH
A:
[543-619]
----------------------------------------------------------------------
G
F
S
Q
A
-
D
I
V
K
I
A
G
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D
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G
T
Q
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V
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D
L
E
R
M
----
L
G
D
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---
G
F
----
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----
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-
V
A
G
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N
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G
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A
Q
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A
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L
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E
H
E
A
T
L
N
E
----
R
G
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A
G
-
N
---
G
G
G
A
Q
A
L
K
-----------------
A
V
L
E
H
E
A
T
L
D
E
R
G
F
S
R
A
D
I
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R
I
A
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-
N
G
G
G
A
Q
A
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-------------
K
A
---
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L
E
H
G
P
T
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---------
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E
R
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N
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T
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----
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A
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G
A
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A
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E
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P
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R
G
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I
V
E
I
A
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N
G
G
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A
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K
A
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G
P
V
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M
----
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R
S
N
E
E
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-----
V
H
V
A
A
R
R
---
G
G
A
G
R
I
R
K
M
V
-
A
P
L
L
-----------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
40.52
10%
19
- C4 -
3C9P
1
?
A:
[29-119]
-------------
G
K
A
E
S
V
H
Q
V
T
S
W
L
T
G
-----
Y
E
V
S
D
--
V
-
L
A
C
L
D
R
D
V
T
Y
G
D
F
----
F
R
Q
A
P
Y
Y
V
P
-
E
R
I
A
I
T
-
G
K
I
C
G
V
R
I
EEI
D
D
--
P
L
M
Q
E
-
I
R
R
L
D
K
L
V
D
W
L
A
K
G
K
T
S
Q
Q
V
----
L
E
K
Y
---
E
K
----
H
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
36.76
27%
43
- C4 -
2CPG
1
COPG_STRAG
A:
[1-43]
----------------------------------------------------------------------------------------------
M
K
-
K
R
L
T
I
T
L
S
E
S
V
L
E
--
N
L
E
K
M
----
A
R
E
M
---
G
L
----
S
K
S
A
M
I
----
S
-
V
A
L
E
N
-
Y
K
K
G
-
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
34.17
33%
71
- C4 -
4ECH
1
FMS1_YEAST
A:
[62-103]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
A
---
S
W
H
Q
D
T
L
T
N
P
-
L
F
L
E
E
A
Q
L
S
L
N
D
G
R
T
R
F
V
F
D
D
D
N
F
I
-
Y
I
D
E
E
R
G
R
V
D
H
D
-------------
K
E
L
L
L
E
I
V
D
N
-----
E
M
S
K
F
A
E
L
E
F
H
L
G
V
S
D
---------
C
S
F
F
Q
L
V
M
K
Y
L
L
Q
-------------------------------
21
Fugue
28.99
20%
87
* C4 *
3H6P
1
?
A:
[31-90]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
F
A
A
K
A
-
G
L
----
M
-
R
H
T
I
G
Q
A
E
-----
Q
Q
A
M
S
A
Q
---
A
F
H
Q
G
E
S
A
A
A
-
F
Q
G
A
H
A
R
F
V
A
A
A
A
K
V
N
T
L
L
D
I
A
Q
A
N
-
L
------------------------------------------------------------------------------------------------------------
12
HHSearch
23.95
21%
186
- C4 -
3F5T
-
?
A:
[40-68]
------
Q
A
S
L
R
G
R
G
N
T
L
G
L
D
I
E
T
A
T
R
A
G
-----
K
Q
I
V
E
R
I
L
-
E
G
E
S
D
P
A
S
R
Y
L
T
D
----
M
T
L
E
E
M
S
R
D
-
W
F
M
L
M
P
-
K
Q
K
V
A
G
S
L
---
C
I
--
K
--
M
D
-
Q
A
I
M
D
K
T
I
I
L
K
A
N
F
S
V
I
F
D
R
----
L
E
T
L
---
I
L
----
L
R
A
F
T
E
----
E
-
G
A
I
V
G
-
E
I
S
P
-
L
P
S
L
P
G
-
H
T
G
E
D
V
K
N
----
A
I
G
V
L
I
G
G
L
E
W
N
D
-
N
---
T
V
R
V
T
E
T
I
-----------------
Q
R
F
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
18.95
25%
349
- C4 -
3TWE
1
?
A:
[7-26]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
K
-
E
L
E
D
L
Q
E
R
----
L
R
K
L
R
K
K
L
R
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
0.64
19%
533
- C1 -
2FYU
-
QCR10_BOVIN
K:
[39-53]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
L
I
L
D
W
V
P
Y
I
N
G
-
K
F
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------