@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs0164: (2015-11-29 )
MKVIRKFCTYQKLRVKAFTLLECLVALVTITGALLVYQGLTKLLAQQIVVMSSSSQSEWVLLTQQLNAEFEGAHLEYLRQNKLYLRKQDKIVTFGKSNKDDFRKTGYDGRGYQPMVYGLDNCQMSQTKSMVKLVFYFKDGLKRTFYYDFKEET
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........--------20--------------------.........30.-..---------.....40--------........50.....-..---.60.......---------.70........----------------80...----------....--.90....---....100..------.-..---.-------.110...-....120----......------------------------.---130----.......140.......150.--------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
V
I
R
K
F
C
T
Y
Q
K
L
R
V
K
A
F
T
--------
L
---------------------
L
E
C
L
V
A
L
V
T
I
T
G
-
A
L
---------
L
V
Y
Q
G
L
T
--------
K
L
L
A
Q
Q
I
V
V
MSSSSQ-S
E
---
W
V
L
L
T
Q
QLNA---------EFE
G
A
H
L
E
Y
L
R
----------------QN
K
L
Y
----------
L
R
KQ--
D
K
I
V
TFG---KS
N
K
D
D
F
R
K------T-GY---D-------GRGYQ
P
M
-
V
Y
GLDNC----
Q
M
S
Q
T
K
------------------------
S
---
M
V
K
----
L
V
F
Y
F
KDGLK
R
T
F
Y
Y
D
FKEET--------------------
21
Fugue
80.74
19%
-48
* C8 *
3Q87
1
?
A:
[1-125]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
P
F
L
L
G
--------
L
---------------------
L
K
C
K
R
C
---------------------
S
F
M
T
--------
K
L
I
L
E
C
E
K
A
E
S
N
D
V
D
-
V
K
-----
I
F
N
K
H
M
F
T
---------
E
N
G
G
E
R
L
K
S
L
V
----------------
N
S
-------------
L
R
D
F
--
H
G
R
-
E
L
S
---
E
Q
D
I
S
S
F
V
E
------
N
-
P
G
---
D
-------
D
E
K
I
K
E
F
-
L
F
G
I
D
V
V
----
E
G
S
L
R
C
------------------------
D
---
M
C
G
----
L
I
Y
P
I
K
G
S
I
V
E
T
--
V
D
T
V
E
S
K
--------------------
3
PsiBlast_PDB
73.12
22%
-31
- C6 -
1YWK
-
KDUI1_ENTFA
A:
[1023-1123]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
F
L
V
E
K
V
F
I
P
G
-
A
I
S
L
T
Y
T
HNDR
M
I
F
G
G
V
T
--------
P
T
T
E
E
L
E
I
I
L
D
K
E
L
G
-
V
D
---
Y
F
L
E
R
R
E
L
G
V
I
N
IG
G
P
G
F
I
E
I
D
G
A
K
E
T
M
K
K
----------------
Q
D
G
Y
Y
----------
I
G
K
E
--
T
K
H
V
R
F
S
---
S
E
N
P
D
N
P
A
K
--------------------------------------------------------------------------------------------------------------------------
25
Fugue
69.87
19%
-11
- C4 -
1AOC
1
COAG_TACTR
A:
[1-175]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
D
T
N
A
P
I
C
L
C
D
E
P
G
V
L
G
R
T
-----------------------------------
Q
I
V
T
T
E
I
-
K
D
---------
K
I
E
K
A
V
E
--------
A
V
A
Q
E
S
G
V
S
G
R
G
F
S
I
F
S
H
---
H
P
V
F
R
E
C
G
K
Y
---------
E
C
R
T
V
R
P
E
H
S
R
----------------
C
Y
N
F
P
PFTHFKSE
C
P
V
S
T
R
--
D
C
E
P
V
F
G
---
Y
T
V
A
G
E
F
R
V
I
V
Q
A
PR
A
-
G
F
---
R
-------
Q
C
V
W
Q
H
K
C
R
F
G
S
N
S
C
GY
N
G
R
C
T
Q
Q
R
------------------------
S
---
V
V
R
----
L
V
T
Y
N
---
L
E
K
D
G
F
L
C
E
S
F
R
T
C
C
GCPCRSF-----------
19
HHSearch
69.40
11%
-38
- C6 -
3NJE
-
GSPJ_PSEAE
A:
[39-195]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
R
M
-
R
E
---
L
V
R
A
M
G
A
L
E
R
---------
D
L
T
Q
A
V
E
R
P
V
R
D
ELG
D
N
R
G
A
F
L
S
E
G
EN
D
Q
I
V
E
----------
F
T
R
G
G
W
L
Q
R
V
R
W
S
---
L
S
-
G
E
T
L
E
R
------
R
Y
W
L
---
V
LDRAQD
S
K
P
R
V
Q
Q
V
-
L
D
G
V
T
A
L
----
S
W
R
F
L
D
KEHNWQGHWPTDEGS
E
E
E
R
L
E
SLP
L
---
A
V
E
----
M
T
L
E
H
R
H
Y
G
K
L
V
R
V
W
R
L
L
D
P
P
--------------------
6
PsiBlast_PDB
65.46
22%
-29
- C6 -
4X7P
5
?
A:
[87-161]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
Y
K
H
I
S
--------
E
R
L
K
N
T
I
E
I
E
E
S
K
G
I
-
S
R
---
Y
F
D
I
T
T
----------------
G
T
Y
I
A
Y
I
R
----------------
K
S
K
---------------
S
--
E
K
V
I
D
F
F
---
K
D
N
K
R
I
E
R
F
------
S
-
F
I
---
D
-------
N
K
V
H
M
K
E
-
T
F
N
V
D
N
K
----
V
C
Y
Q
V
F
------------------------
Y
---
D
E
K
----
G
Y
P
Y
I
S
R
N
I
N
A
N
N
G
A
V
G
K
T
Y
V
--------------------
30
Fugue
64.85
17%
-44
- C9 -
1VK5
8
RDM1_ARATH
A:
[36-156]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
L
L
R
R
A
E
M
Y
Q
D
Y
M
K
Q
-------------------------------------
V
P
I
P
T
N
R
G
-
S
L
---------
I
P
F
----------------------------
T
S
---
W
V
G
L
S
I
S
M
K
Q
---------
L
Y
-
G
Q
P
L
H
Y
L
T
----------------
N
V
L
L
Q
----------
R
W
D
Q
--
S
R
---
F
G
---
T
D
S
E
E
Q
R
L
D
------
S
-
I
I
---
H
-------
P
T
K
A
E
A
T
-
I
W
L
V
E
E
I
----
H
R
L
-
T
P
------------------------
S
---
H
L
H
----
M
A
L
L
W
R
S
D
P
M
Y
H
S
F
I
D
P
I
F
P
E
--------------------
5
PsiBlast_PDB
63.85
22%
-34
- C6 -
4WAD
1
?
A:
[92-166]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
Y
K
H
I
S
--------
E
R
L
K
N
T
I
E
I
E
E
S
K
G
I
-
S
R
---
Y
F
D
I
T
T
----------------
G
T
Y
I
A
Y
I
R
----------------
K
S
K
---------------
S
--
E
K
V
I
D
F
F
---
K
D
N
K
R
I
E
R
F
------
S
-
F
I
---
D
-------
N
K
V
H
M
K
E
-
T
F
N
V
D
N
K
----
V
C
Y
Q
V
F
------------------------
Y
---
D
E
K
----
G
Y
P
Y
I
S
R
N
I
N
A
N
N
G
A
V
G
K
T
Y
V
--------------------
7
PsiBlast_PDB
63.18
22%
-36
- C6 -
4X6L
-
?
A:
[87-161]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
Y
K
H
I
S
--------
E
R
L
K
N
T
I
E
I
E
E
S
K
G
I
-
S
R
---
Y
F
D
I
T
T
----------------
G
T
Y
I
A
Y
I
R
----------------
K
S
K
---------------
S
--
E
K
V
I
D
F
F
---
K
D
N
K
R
I
E
R
F
------
S
-
F
I
---
D
-------
N
K
V
H
M
K
E
-
T
F
N
V
D
N
K
----
V
C
Y
Q
V
F
------------------------
Y
---
D
E
K
----
G
Y
P
Y
I
S
R
N
I
N
A
N
N
G
A
V
G
K
T
Y
V
--------------------
4
PsiBlast_PDB
63.05
22%
-37
- C6 -
4WAC
-
?
A:
[92-166]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
Y
K
H
I
S
--------
E
R
L
K
N
T
I
E
I
E
E
S
K
G
I
-
S
R
---
Y
F
D
I
T
T
----------------
G
T
Y
I
A
Y
I
R
----------------
K
S
K
---------------
S
--
E
K
V
I
D
F
F
---
K
D
N
K
R
I
E
R
F
------
S
-
F
I
---
D
-------
N
K
V
H
M
K
E
-
T
F
N
V
D
N
K
----
V
C
Y
Q
V
F
------------------------
Y
---
D
E
K
----
G
Y
P
Y
I
S
R
N
I
N
A
N
N
G
A
V
G
K
T
Y
V
--------------------
8
PsiBlast_PDB
62.38
27%
-67
- C3 -
1LNS
-
PEPX_LACLC
A:
[648-758]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
V
R
V
K
D
F
K
VLDRGRNF
M
---------------------
L
D
D
L
V
E
L
P
L
V
E
S
-
P
Y
Q--------
L
V
T
K
G
F
T
--------
N
L
Q
N
Q
S
L
L
T
V
S
D
L
K
A
-
D
E
---
W
F
T
I
---------------
K
F
E
------
L
Q
----------------
P
T
I
Y
H
----------
L
E
K
A
--
D
K
L
R
V
I
L
---
Y
S
T
--
D
F
E
H
------
T
-
V
R
---
D
-------
N
R
---
K
V
-
T
Y
E
I
D
-------
L
S
Q
S
K
------------------------
L
---
I
I
P
----
I
E
S
V
K
N
-----------------------------------
23
Fugue
61.88
15%
-69
* C7 *
4I6M
6
ARP9_YEAST
B:
[3-439]
PFRQDS
I
L
I
I
Y
P
R
SQ
T
T
L
V
Q
F
G
LNEETFTVPE
L
E
I
P
T
Q
I
Y
R
T
T
R
QD
G
S
Y
T
Y
H
STNKDNK
A
E
L
I
KPIQNGEIID
I
S
A
F
T
Q
F
L
R
L
I
F
V
S
I
L
S
D
R
A
N
K
NQDAFEAELS
N
I
P
L
L
L
I
T
H
HSWS
Q
S
D
L
E
I
I
T
Q
Y
V
F
ESLEINNLIQLP
A
S
L
A
A
T
Y
S
M
ISLQ
N
C
C
I
I
D
V
G
TH
H
T
D
I
I
P
I
V
DYAQLDHL
V
S
S
I
PMG
G
Q
S
I
N
D
S
L
K
K
L
L
PQWD
D
D
Q
I
E
S
L
K
K
SPI
F
E
V
L
SKNSDLE
F
N
T
F
W
D
EKG
N
E
I
K
V
G
KQRFQGC
N
N
L
I
K
N
I
S
N
R
V
G
L
T
L
D
N
I
D
D
I
N
--------
K
---------------------
A
K
A
V
W
E
N
I
I
I
V
G
-
G
T
---------
T
S
I
S
G
F
K
--------
E
A
L
L
G
Q
L
L
K
D
H
L
I
I
E
-
P
E
---
E
E
K
S
K
R
E
E
E
A
---------
K
S
F
V
P
T
I
E
Y
V
Q
----------------
C
P
T
V
I
-----------------
K
L
A
K
Y
P
---
D
Y
F
-
P
E
W
K
K
------
S
-
G
Y
---
S
-------------------
E
I
I
----
F
L
G
A
Q
I
------------------------
V
---
S
K
Q
----
I
F
T
H
P
K
D
----
T
F
Y
I
T
R
E
K
Y
N
M
KGPAALWDVQF--------
28
Fugue
58.02
14%
-56
- C7 -
4O6Y
3
ACFR2_ARATH
A:
[10-219]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P
I
F
M
V
V
R
V
L
G
F
I
I
A
A
L
V
L
T
W
T
--------
V
HYRGGLALSSDN
K
D
H
I
F
N
V
H
P
V
M
M
V
I
G
L
I
L
F
N
G
E
A
M
---------
L
A
Y
K
S
V
Q
G
T
K
N
L
K
K
L
V
H
L
T
L
Q
L
T
A
F
I
L
S
L
I
-
G
V
---
W
A
A
L
K
F
H
I
D
K
GIE------
N
F
Y
S
L
H
S
W
L
G
L
----------------
A
C
L
F
L
----------
F
A
F
Q
--
W
A
A
G
F
V
T
YWY
P
G
G
S
R
N
S
R
A
------
S
-
L
M
---
P
-------
W
H
V
F
L
G
I
-
S
I
-
Y
A
L
A
----
L
V
T
A
T
T
------------------------
G
---
I
L
E
----
K
V
T
F
L
Q
V
N
Q
V
I
T
R
Y
S
T
E
A
M
L
V
N
T
M
G
V
L
I
L
I
L
G
G
F
V
I
L
G
V
V
T
9
PsiBlast_PDB
57.18
26%
0
- C6 -
3ISM
1
?
A:
[27-101]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
P
G
L
D
--------
H
V
R
S
H
S
D
Y
V
L
S
Y
D
R
R
-
N
R
VPH
W
V
F
--
E
H
L
T
A
---------
E
-
S
V
A
K
N
D
A
V
D
----------------
R
S
K
C
D
----------
F
K
Q
D
--
E
S
I
H
P
F
F
---
R
S
Q
N
T
D
Y
R
R
------
S
-
G
Y
---
D
--------
R
G
H
M
A
A
-
A
G
N
H
R
L
H
----
Q
K
H
C
D
E
------------------------
T
---
F
Y
L
----
S
N
M
A
P
Q
V
G
Q
G
F
N
R
D
A
W
N
T
L
E
A
--------------------
16
HHSearch
54.89
14%
-53
* C6 *
2RET
-
?
B:
[113-169]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
V
V
T
P
L
-
L
S
D
V
E
E
L
----
N
V
R
F
Y
D
GKQWINEWSNELTLP---------
A
---
A
I
S
----
V
E
L
T
L
K
D
Y
G
K
I
A
R
T
Y
L
T
P
E
G
N
--------------------
27
Fugue
53.77
14%
-6
- C8 -
2JQN
-
?
A:
[1-116]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
L
I
Y
K
I
L
S
------------------------------------------------------------------
R
A
E
W
D
--------
A
A
K
A
Q
G
R
F
E
G
S
A
V
D
L
-
A
D
---
G
F
I
H
L
S
A
G
E
Q
---------
A
Q
E
T
A
A
K
W
F
R
G
----------------
Q
A
N
L
V
----------
L
L
A
V
--
E
-----
A
---
E
P
L
G
E
D
L
K
W
------
E
-
A
S
---
R
-------
G
G
A
R
F
P
H
-
L
Y
R
----------
P
L
L
V
------------------------
S
---
E
V
T
----
R
E
A
D
L
D
L
D
A
D
G
V
P
Q
L
G
D
H
L
A
L
E-------------------
22
Fugue
50.96
16%
8
* C9 *
2JX5
-
?
A:
[1-69]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
V
I
V
R
L
Q
D
Q
-
T
L
---
P
F
E
L
P
A
G
A
R
A
---------
S
Q
L
S
N
L
L
S
S
-
S
----------------
G
M
A
F
S
----------
L
H
T
Q
--
G
R
V
L
S
E
A
---
A
E
L
N
D
K
M
V
I
------
D
-
A
F
V
P
A
D
-------
G
A
G
L
E
------------------------------------------------------------------------------------------------
24
Fugue
50.93
13%
-62
- C5 -
1KTZ
-
TGFR2_HUMAN
B:
[25-130]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
Q
L
C
K
F
C
D
V
R
F
S
T
-------------------------------------
C
D
N
Q
K
S
C
M
S
N
-
C
S
---------
I
--
T
S
I
C
--------
E
K
P
Q
E
V
C
V
A
V
W
R
K
N
D
---------------------------
E
N
I
T
L
E
T
V
C
----------------
H
D
P
K
L
----------
P
Y
---------------------------------------------
H
D
F
I
L
E
-
D
A
A
S
P
K
C
----
I
M
K
E
K
K
------------------------
K
PG
E
T
F
F
----
M
C
S
C
S
S
D
E
C
N
D
N
I
I
F
S
--
E
E
Y
--------------------
18
HHSearch
50.69
8%
-39
- C6 -
3CI0
1
?
J:
[108-161]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
Q
K
L
-
I
P
-
A
D
S
L
----
R
L
Q
F
Y
D
GTRWQESWSSVQAIP---------
V
---
A
V
R
----
M
T
L
H
S
P
Q
W
G
E
I
E
R
I
W
L
L
R
G
P
Q
--------------------
2
PsiBlast_PDB
49.91
33%
17
- C6 -
1SEF
-
?
A:
[37-92]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
Q
N
A
V
P
---------
G
F
E
N
V
D
I
S
I
L
G
----------------
S
P
K
L
G
----------
A
T
F
V
--
D
Y
I
A
T
F
H
---
K
N
G
Q
---
Q
T
------
T
-
G
F
---
G
-------
G
D
G
I
Q
T
L
-
V
Y
V
I
D
G
R
----
L
R
V
S
D
G
------------------------
Q
---
E
T
H
----
E
L
E
A
G
G
Y
A
Y
F
T
P
E
M
K
M
Y
L
A
N
A
--------------------
1
PsiBlast_PDB
48.24
33%
-6
- C10 -
3KEA
-
?
A:
[90-134]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
---
D
-------
D
K
G
N
T
A
L
-
Y
Y
A
V
D
S
G
----
N
M
Q
T
V
K
------------------------
L
---
F
V
K
K
NWR
L
M
F
Y
G
K
T
G
W
K
T
S
F
Y
H
A
V
M
L
N
D
--------------------