@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs0165: (2015-11-29 )
MILKKKLKAGILLQAIVLAAVFTLVLQFYLARILATERQYHSQIEASKAYLTAQLAYKTIEGDSISGKCYFTGGYASYLQEGNYLQVKVTLDKGGNYNHKFYRKTDTLQVPLKSNDNKASHKH
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...---------......------10...---.....---20.....-----.---..30...--.....---40..---...--...50........-60.....--...70..---------------.....--------.80...--------..-------..----.---90---........100------..---------..-------....110-..---......120----------...---------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MI
L
---------
K
K
K
L
K
A
------
G
I
L
L
Q
---
A
I
V
L
A
---
A
V
F
T
L
V
L
-----
Q
---
F
Y
L
A
R
I
L
--
A
T
E
R
Q
---
Y
H
S
Q
---
I
E
A
--
S
K
A
Y
L
T
A
Q
L
A
Y
K
T-IEGDSI
S
--
G
K
C
Y
F
TG---------------G
Y
A
S
Y
--------LQEG
N
Y
--------
L
Q
-------
V
K
----
V
---
T
L---DKGGNYN
H
K
F
-------
Y
R
---------KT-------
D
T
L
Q
V
P--LK---SNDNKAS------------HKH---------------------------------------------------------------------------------------------
10
PsiBlast_PDB
66.48
28%
8
- C6 -
4O9X
-
?
A:
[1930-2025]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
T
Q
N
N
---
Y
T
T
N
---
I
T
V
--
S
N
R
S
N
R
A
V
L
S
T
L
T
--
E
D
P
A
Q
V
--
D
A
L
F
D
A
G
---------------
G
H
Q
N
T
--------
L
I
S
G
Q
N
--------
L
N
W
N
TRGEL
Q
Q
----
V
---
T
L
V
K
R
D
K
G
A
N
D
D
R
E
W
-------
Y
R
---------
Y
S
-------
G
D
G
R
R
M
--
L
K
---
I
N
E
Q
Q
A
S
------------
N
N
A
---------------------------------------------------------------------------------------------
29
Fugue
65.61
21%
-44
* C7 *
2JOZ
-
YXEF_BACSU
A:
[1-135]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
M
V
S
G
C
Q
Q
Q
KE
E
T
P
F
Y
Y
------
G
T
W
D
E
---
G
R
A
P
G
P
TD
G
V
K
S
A
T
V
-----
T
---
F
T
E
D
E
V
V
--
E
T
E
V
M
-----------
E
G
--
R
G
E
V
Q
L
P
F
M
A
Y
K
V
-
I
S
Q
S
----------
T
D
---------------
G
S
I
E
I
--------
Q
Y
L
G
P
Y
--------
Y
P
-------
L
K
----
S
---
T
L
---
K
R
G
E
N
G
T
L
I
W
-------
E
Q
---------
N
G
-------
Q
R
K
T
M
T
R
-
I
E
---
S
K
T
G
R
E
E
K
D
E
K
S
K
S
LEHHH
H
H
H
---------------------------------------------------------------------------------------------
38
Fugue
63.98
13%
-52
- C4 -
2KCQ
-
?
A:
[1-153]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKTT
P
D
I
L
D
Q
I
R
---------
V
H
G
A
D
A
YP
E
E
G
C
G
F
L
L
G
---
T
V
T
D
D
---
G
D
N
R
V
A
A
-----
L
---
H
R
A
T
N
R
R
--
S
E
Q
R
T
---
R
R
Y
E
---
L
T
A
--
D
D
Y
R
A
A
D
A
A
A
Q
E
Q
---
G
L
D
V
V
--
G
V
Y
H
S
H
P
---------------
D
H
P
A
R
--------
P
S
A
T
D
L
E
E
ATFPG
F
T
Y
-------
V
I
----
V
---
S
V
---
R
D
G
A
P
E
A
L
T
A
-------
W
A
L
A
PDRS
E
F
H
R
E
-------
D
I
V
R
P
D
--
P
E
---
A
P
L
E
H
H
H
------------
H
H
H
---------------------------------------------------------------------------------------------
31
Fugue
62.17
19%
-71
- C4 -
4TSD
2
?
A:
[2-180]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AIFGELSSLGHLFKKTQEL
E
I
L
H
E
Y
L
K
E
V
M
---------
Q
K
G
S
K
A
------
N
Q
R
V
L
---
N
L
A
T
N
---
T
E
F
Q
V
P
L
-----
G
HG
I
F
S
I
E
Q
S
Y
--
C
L
E
H
A
---
K
E
S
E
K
G
F
F
E
S
--
H
K
K
Y
V
D
F
Q
L
I
V
K
G
-
V
E
G
A
K
A
V
G
I
N
Q
A
V
I
K
N
---------------
P
Y
D
E
K
RD
L
I
V
Y
E
P
V
S
E
A
S
F
--------
L
R
-------
L
H
AG
M
L
A
---
I
F
---
F
E
N
D
A
H
A
L
R
F
YGESFEK
Y
R
---------
E
E
-------
P
I
F
K
A
V
--
V
K
---
A
P
K
G
L
I
K
------------
L
K
L
AA-------------------------------------------------------------------------------------------
17
PsiBlast_PDB
60.88
26%
-19
- C3 -
4OM9
-
PET_ECO44
A:
[777-858]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
---
F
A
L
A
M
L
D
--
G
F
D
T
S
---
Y
Q
G
S
---
I
K
A
--
A
Q
S
S
L
A
M
N
N
A
L
W
K
-
V
T
G
N
S
E
L
--
K
K
L
N
S
T
G
---------------
S
M
V
L
F
---------
N
G
G
K
N
--------
I
F
-------
N
T
----
L
---
T
V
---
D
E
L
T
T
S
N
S
A
F
-------
V
M
---------
R
T
-------
N
T
Q
Q
A
D
--
Q
L
---
I
V
K
N
K
L
E
------------
G
A
N
---------------------------------------------------------------------------------------------
34
Fugue
60.44
12%
-55
- C5 -
4JKV
10
C562_ECOLX (first)
A:
[2-470]
GTAD
L
E
D
N
W
E
T
L
N
D
N
L
K
V
I
E
KADN
A
A
Q
V
K
D
A
L
T
K
M
R
A
A
A
L
D
A
Q
K
ATPPKLEDKSPDS
P
E
M
K
D
F
R
H
G
F
D
I
L
V
G
Q
I
D
D
A
L
K
L
A
N
E
GK
V
K
E
A
Q
A
A
A
E
Q
L
K
T
T
R
N
AYIQKYLSGQCEVP
L
V
R
T
DNPKSWYEDVEG
C
G
I
Q
CQNPLFT
E
A
E
H
Q
D
M
H
S
Y
I
A
A
F
G
A
V
T
G
L
C
T
L
F
T
L
A
T
F
V
A
D
WRNSNRYPAV
I
L
F
Y
V
N
A
C
F
F
V
G
S
I
G
W
L
AQFMDG
A
R
R
E
I
VCRADGTMRLGEPTSNETL
S
C
V
I
I
F
V
I
V
Y
---------
Y
A
L
M
A
G
------
V
V
W
F
V
---
V
L
T
Y
A
---
W
H
T
S
F
K
A
-----
L
---
G
T
T
Y
Q
P
G
--
K
T
S
Y
F
---
H
L
L
T
---
W
S
L
--
P
F
V
L
T
V
A
I
L
A
V
A
Q
-
V
D
G
D
S
V
S
--
G
I
C
F
V
G
Y
---------------
K
N
Y
R
Y
--------
R
A
G
F
V
L
--------
A
P
-------
I
G
----
L
---
V
L
---
I
V
G
G
Y
F
L
I
R
G
-------
V
M
---------
T
L
-------
F
S
I
K
S
N
--
H
P
---
G
L
L
S
E
K
A
------------
A
S
K
I
N
E
T
M
L
R
L
G
I
F
G
F
L
A
F
G
F
V
L
I
T
F
S
C
H
F
Y
D
F
F
N
Q
A
E
W
E
R
S
F
R
D
Y
V
L
C
Q
A
NCEIK
N
R
P
S
L
L
V
E
K
I
N
L
F
A
M
F
G
T
G
I
A
M
S
T
W
VWT
K
A
T
L
L
I
W
R
R
T
W
C
37
Fugue
48.58
11%
-25
- C7 -
2K13
-
?
X:
[1-103]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
R
---------------------
E
---
D
C
W
T
F
Y
A
-----
N
---
R
K
Y
T
D
F
D
--
K
S
F
K
K
---
S
S
D
L
---
D
E
C
--
K
K
T
C
F
K
T
E
Y
C
Y
I
V
-
F
E
-
D
T
V
N
--
K
E
C
Y
Y
N
V
---------------
V
D
G
E
E
--------
L
D
Q
E
K
F
--------
V
------------------------
V
D
E
N
F
T
E
N
Y
-------
L
T
---------
D
C
-------
E
G
K
D
A
G
--
N
A
---
A
G
T
G
D
E
S
------------
D
E
V
DED------------------------------------------------------------------------------------------
33
Fugue
47.65
15%
-37
* C4 *
2LN3
-
?
A:
[1-83]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
L
---------
T
R
T
I
T
S
------
Q
---------
N
K
E
---
E
L
L
E
I
A
L
-----
K
---
F
I
S
Q
G
-
L
--
D
L
E
V
E
---
F
D
S
T
---
D
D
K
--
E
I
E
E
F
E
R
D
M
E
D
L
A
-
K
K
T
---------------------------------------------------------------------------------
G
V
Q
I
Q
K
Q
W
-------
Q
G
------------------
N
K
L
R
I
R
--
L
K
---
G
S
L
E
H
H
H
------------
H
H
H
---------------------------------------------------------------------------------------------
30
Fugue
47.41
16%
-18
- C4 -
2EHP
-
Y1627_AQUAE
A:
[3-126]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
F
---------
T
H
E
G
K
V
------
E
G
V
P
G
---
N
Y
P
L
T
---
A
E
N
L
F
R
I
-----
G
---
L
A
L
C
T
L
W
--
I
L
D
K
E
---
I
E
E
P
---
T
L
S
I
P
E
T
N
F
V
T
L
A
L
S
V
G
F
M
N
A
G
G
S
V
N
V
-
G
K
---
G
G
---------------
D
I
K
L
F
--------
L
Q
K
G
E
I
--------
Y
V
-------
L
E
----
F
Q
PL
S
E
---
T
D
I
K
K
L
E
S
I
L
-------
F
G
---------
R
A
-------
P
---
I
P
--
K
K
---
T
G
E
D
I
G
S
------------
F
K
C
---------------------------------------------------------------------------------------------
32
Fugue
45.23
14%
-6
- C1 -
1NY4
-
RS28_PYRHO
A:
[1-71]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
E
D
E
G
--
Y
P
A
E
V
I
E
---------------
I
I
G
R
T
--------
G
T
T
G
D
V
--------
T
Q
-------
V
K
----
V
---
R
I
---
L
E
G
R
D
K
G
R
V
I
-------
R
R
---------
N
V
R
G
PVRVG
D
I
L
I
L
R
--
E
T
---
E
R
E
A
R
E
I
------------
K
S
R
R--------------------------------------------------------------------------------------------
35
Fugue
45.04
9%
-67
- C2 -
1UEB
-
EFP_THET8
A:
[1-184]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
S
---------
V
T
D
L
R
P
------
G
T
K
V
K
M
DG
G
L
W
E
C
---
V
E
Y
Q
H
Q
K
L
G
R
G
G
A
---
K
V
V
A
K
F
K
N
L
E
T
G
A
T
---
V
E
R
T
---
F
N
S
--
G
E
K
L
E
D
I
Y
V
E
T
R
E
-
L
Q
Y
L
Y
P
E
--
G
E
E
M
V
F
M
D
LETYEQFAVPRSRV
V
G
A
E
F
--------
F
K
E
G
M
T
--------
A
L
-------
G
D
----
M
---
Y
E
---
G
Q
P
I
K
V
T
P
P
T
-------
V
V
---------
E
L
-------
K
V
V
D
T
P
PG
V
R
---
G
D
T
V
S
G
G
------------
S
K
P
A
T
L
ETG
A
V
V
Q
V
P
LFVEPG
E
V
I
K
V
DTRTGEYVGRA-----------------------------------------------------------
16
PsiBlast_PDB
44.75
25%
-51
- C5 -
4HR3
-
?
A:
[14-79]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
---
E
L
I
A
A
V
R
-----
E
---
F
I
D
A
E
V
M
--
P
V
E
R
A
V
L
A
H
H
D
E
---
L
L
G
--
A
R
A
G
T
T
A
E
L
W
H
V
P
-
P
E
L
D
S
L
K
--
A
K
A
R
A
A
G
---------------
L
W
N
L
F
--------
L
P
D
P
E
L
--------
G
G
-------
G
L
----
S
---
N
S
---
E
Y
A
P
L
A
E
Q
M
G
-------
R
S
---------
L
F
-------
A
P
T
V
F
N
--
C
N
---
A
P
D
S
G
N
M
------------
E
V
L
---------------------------------------------------------------------------------------------
15
PsiBlast_PDB
40.50
31%
27
* C6 *
3MBW
1
EPHA2_HUMAN
A:
[112-164]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
P
G
---------------
G
A
S
S
C
--------
K
E
T
F
N
L
--------
Y
Y
-------
A
E
----
S
---
D
L
---
D
Y
G
T
N
F
Q
K
R
L
-------
F
T
---------
K
I
-------
D
T
I
-
A
P
--
D
E
I
T
V
S
S
D
F
E
A
R
------------
H
V
K
---------------------------------------------------------------------------------------------
4
PsiBlast_PDB
39.20
43%
32
- C8 -
4MSL
-
SORT_HUMAN
A:
[340-362]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
V
--------
L
S
E
D
N
S
--------
I
Q
-------
T
M
----
I
---
T
F
---
D
Q
G
G
R
W
T
H
L
R
-------
K
P
---------
E
N
-------
S
E
C
D
A
T
--
A
K
---
N
K
N
E
C
S
L
------------
H
I
H
---------------------------------------------------------------------------------------------
22
HHSearch
37.95
30%
-116
- C5 -
2L34
-
TYOBP_HUMAN
A:
[7-26]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
V
L
A
------
G
I
V
V
G
---
D
L
V
L
T
---
V
L
I
A
L
A
V
-----
Y
---
F
L
G
R
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
35.83
33%
-8
- C5 -
4O9R
1
SMO_HUMAN
A:
[188-224]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
L
A
V
A
Q
-
V
D
G
D
S
V
S
--
G
I
C
F
V
-----------------
G
Y
K
N
Y
--------
R
Y
R
A
G
F
--------
V
L
-------
A
P
----
I
---
G
L
---
V
L
I
V
G
G
Y
F
L
I
-------
R
G
---------
V
M
-------
T
L
F
S
I
K
--
S
N
---
H
A
D
L
E
D
N
------------
W
E
T
---------------------------------------------------------------------------------------------
13
PsiBlast_PDB
35.79
31%
17
- C6 -
3MX0
-
EPHA2_HUMAN
A:
[82-119]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
P
G
---------------
G
A
S
S
C
--------
K
E
T
F
N
L
--------
Y
Y
-------
A
E
----
S
---
D
L
---
D
Y
G
T
N
F
Q
K
R
L
-------
F
T
---------
K
I
-------
D
T
I
A
P
D
--
E
I
---
T
V
S
S
D
F
E
------------
A
R
H
---------------------------------------------------------------------------------------------
3
PsiBlast_PDB
35.57
43%
36
- C8 -
4N7E
-
SORT_HUMAN
A:
[340-362]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
V
--------
L
S
E
D
N
S
--------
I
Q
-------
T
M
----
I
---
T
F
---
D
Q
G
G
R
W
T
H
L
R
-------
K
P
---------
E
N
-------
S
E
C
D
A
T
--
A
K
---
N
K
N
E
C
S
L
------------
H
I
H
---------------------------------------------------------------------------------------------
24
HHSearch
35.28
27%
-166
- C5 -
2M20
-
EGFR_HUMAN
A:
[6-27]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
------
T
G
L
V
G
---
A
L
L
L
L
---
L
V
V
A
L
G
I
-----
G
---
L
F
I
R
R
R
H
--
I
V
R
K
R
---
T
L
R
R
---
L
L
Q
--
E
R
E
L
V
E
P
L
T
P
S
G
E
-
K
L
W
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
33.99
23%
-154
* C5 *
3S8F
5
COXA_THET8
C:
[12-33]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
L
V
L
---
T
L
T
I
L
---
V
F
W
L
G
V
Y
-----
A
---
V
F
F
A
R
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------