@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs0201: (2015-11-29 )
MKDYVTTQILSILGILAGACLSYLKFAQGNSLLGIIWAAFALMYIVRLYKAYQKQKKEKP
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10.....-...20...-.-....30-......-.-----.40..-......50........-60--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MK
D
Y
V
T
T
Q
I
L
S
I
L
G
I
L
-
A
G
A
C
L
S
Y
L
-
K
-FAQGN
S
-
L
L
G
I
I
W
-
A
-----
A
F
A
L
M
-
Y
I
V
R
L
Y
K
A
Y
Q
K
Q
KKEK-P---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
74.27
20%
-107
* C4 *
4FHL
10
YEKI_SCHPO
A:
[2-392]
G
S
M
T
L
S
S
N
Q
Y
Q
L
P
LN
V
R
P
Y
T
TTWCSQSPSCSN
L
L
A
I
G
H
DT
G
I
T
I
Y
C
A
S
E
ES
T
G
L
T
L
Q
E
L
F
TIQTGLPTL
H
L
S
F
S
SS
C
S
Y
S
ENSPVYS
L
F
L
A
C
V
C
QDN
T
V
R
L
I
I
T
KNETII
T
Q
H
V
L
G
G
KSGHHNFVN
D
I
D
I
A
D
V
Y
S
ADNRLA
E
Q
V
I
A
S
V
GDDC
T
L
I
I
W
R
LTDE
G
P
I
L
A
G
Y
P
L
SSPGI
S
V
Q
F
R
PSNPN
Q
L
I
V
G
E
RNG
N
I
R
I
F
DWTLNLTELVKNPWL
L
T
L
N
TLPLVNSSLA
N
V
R
W
I
G
SDGS
G
I
L
A
M
C
KSG
A
W
L
R
W
N
LF
K
N
L
L
P
N
V
Q
G
I
S
L
F
P
S
L
-
L
G
A
C
P
H
---------
P
R
-
Y
M
D
Y
F
A
-
T
-----
A
H
S
Q
H
-
G
L
I
Q
L
I
N
T
Y
E
K
D
S
N
S
I
-
P
IQLGMPIV
D
F
C
W
H
QDGS
H
L
A
I
A
T
EG
S
V
L
L
T
R
L
MGFT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
72.93
12%
-161
- C3 -
1DDT
-
?
?:
[200-380]
------------------------------------------------------------------------------------------------------------------------------------SCINLD
W
D
V
I
R
D
K
T
K
T
K
I
E
S
L
K
E
H
G
P
I
K
N
K
M
S
E
SPNKTVS
E
E
K
A
K
Q
Y
L
E
E
F
H
Q
T
A
L
E
HPEL
S
E
L
K
T
V
T
GTNPVFA
G
A
N
Y
A
A
W
A
V
N
V
A
Q
V
ID
S
E
T
A
D
N
L
E
K
T
T
A
A
L
S
I
LPG
I
G
S
V
M
GIADGAVHH
N
T
E
E
I
V
A
Q
S
I
A
L
S
S
L
M
-
V
A
Q
A
I
P
L
V
-------
G
E
-
L
V
D
I
G
F
-
A
-----
A
Y
N
F
V
E
S
I
I
N
L
F
Q
V
V
H
N
S
Y
N
R
P
-
A
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
67.35
23%
-130
- C3 -
2GHR
1
META_BACC1
A:
[18-298]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------EE
N
I
F
V
M
T
KERAETQDI
R
A
L
K
I
A
I
L
N
LMPT
K
Q
E
T
E
A
Q
L
L
R
L
I
GNTP
L
Q
L
D
V
H
L
L
H
M
ESSFYKTFRDIENEKFD
G
L
I
I
T
G
A
PVE
T
L
S
F
E
E
V
D
Y
W
E
E
L
K
R
I
M
E
------
Y
-
S
-
K
T
N
V
T
S
-
T
L
H
I
C
W
-
G
-----
A
Q
A
G
L
-
Y
--
H
H
Y
G
V
Q
K
Y
P
L
K
E
K
M
F
G
V
F
E
H
E
V
REQHVKLLQGFDE
L
F
F
A
P
H
S
R
H
T
E
V
R
E
S
D
I
R
E
VKELTLL
A
N
S
EEAGV
H
L
V
I
G
QEGR
Q
V
F
A
LGHSEYSCD
T
L
K
Q
E
Y
E
R
D
R
D
K
GLNIDVPKNYFKHDNPNEKPLVRW
R
S
H
G
N
L
L
F
S
N
W
L
N
YYVYQET---------------------------------------------------------------------------------------------------
13
Fugue
55.70
29%
-24
- C2 -
4IFD
1
CSL4_YEAST
I:
[10-300]
--------------------------------------------------------------------------------------------MACNFQFPEIAYPGKLICPQ
Y
G
T
E
N
K
DG
E
D
I
I
F
N
Y
V
P
G
PG
T
K
L
I
Q
Y
E
H
NG
R
T
L
E
A
I
T
A
TLV
G
T
V
R
C
E
E
E
K
KT
R
R
T
V
K
N
I
L
V
S
V
L
P
GNDFANNLPKEG
D
I
V
L
T
R
V
TRLSLQ
R
A
N
V
E
I
L
A
V
E
D
K
PA
A
T
F
S
V
S
QASSDLGE
T
F
R
G
I
I
R
SQDVRSTDRDRVKVIECFK
P
G
D
I
V
R
A
Q
V
L
S
----
L
-
G
D
G
T
N
Y
Y
L
-
T
-
T
A
R
N
D
---
L
G
V
V
F
-
A
R
A
ANG
A
G
G
L
M
-
Y
A
T
D
W
Q
M
M
T
S
P
V
T
G
A
T
-
E
K
R
KCAKP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
54.31
18%
-66
- C3 -
3MTJ
3
?
A:
[5-442]
----------------------------------------------------------------------------------------------------------------FQGM
K
P
I
H
V
G
L
L
G
LG
T
V
G
G
G
T
L
T
V
L
R
R
N
A
E
E
I
T
R
R
A
G
R
E
I
R
V
V
R
A
A
V
RN
L
D
K
A
E
A
L
AGGLPLTTNPFDVVDDPEID
I
V
V
E
LIGGLE
P
A
R
E
L
V
M
Q
A
I
A
N
G
K
H
V
V
T
AN
K
H
L
V
A
K
Y
G
N
E
I
F
A
A
A
Q
A
K
G
V
M
V
T
F
EAAVAGGIP
I
I
K
A
L
R
E
G
L
T
A
N
R
I
E
W
L
A
G
I
I
-
N
G
T
S
N
F
I
L
S
E
M
R
D
K
G
A
A
-
F
D
D
V
L
K
-
E
-----
A
Q
R
L
G
-
Y
------
A
E
A
D
P
T
F
D
I
-
E
G
I
D
A
A
H
K
L
T
I
L
S
A
I
A
F
GIPMQFER
A
Y
T
E
G
I
SQLT
R
E
D
V
R
Y
A
E
E
L
G
Y
R
I
K
L
L
G
I
A
R
R
A
EN
G
I
E
L
R
V
H
P
T
L
I
PERRLIANVDGA
M
N
A
V
L
V
K
G
DAV
G
P
T
L
Y
Y
G
AGAGS
E
P
T
A
S
A
V
V
A
D
L
V
D
V
T
R
L
H
T
A
DPHHRVPHLAFQPDQLAD
T
P
I
L
P
MEA
V
R
T
A
Y
Y
L
R
L
R
A
FRPG
V
L
A
D
I
T
R
I
L
A
D
S
SISID
A
M
V
Q
KE
Q
V
D
I
I
L
L
T
H
VTL
E
K
N
V
N
A
A
I
A
K
I
E
A
LDAV
A
G
K
V
M
R
I
R
L
E
DLG
11
Fugue
51.42
34%
-107
- C3 -
1VF5
-
PETG_MASLA
G:
[9-31]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-
V
L
G
L
V
F
-
A
-----
T
L
G
G
L
-
F
----
Y
A
A
Y
Q
Q
Y
K
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
45.61
34%
13
- C3 -
2LEH
-
SMN_HUMAN
B:
[26-51]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
Q
S
-
D
D
S
D
I
W
-
D
-----
D
-------
T
A
L
I
K
A
Y
D
K
A
V
A
S
F
-
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
40.42
26%
-3
* C3 *
3BXK
-
D:
[1-19]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
I
-
Y
A
A
M
M
I
M
E
Y
Y
R
Q
S
K
A
K
-
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
39.02
15%
13
- C4 -
1G6Z
-
CLR4_SCHPO
A:
[-2-69]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SPK
Q
E
E
Y
E
V
E
R
I
V
D
E
K
L
D
R
-
N
G
A
V
K
L
Y
R
-
I
-
R
W
L
N
Y
S
-
S
R
S
D
T
W
E
P
-----
P
E
N
L
S
-
G
C
S
A
V
L
A
E
W
K
R
R
K
R
R
L
-
K
GSNS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
38.29
33%
-70
- C3 -
3DVK
-
B:
[8-22]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
A
M
-
M
I
M
D
Y
Y
K
Q
S
K
V
K
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
38.27
27%
-96
- C3 -
3DVE
-
B:
[7-21]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
A
L
-
M
I
F
D
F
Y
K
Q
N
K
T
S
R
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
36.57
19%
-85
- C3 -
2F3Y
-
B:
[3-18]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
A
T
F
-
L
I
Q
E
Y
F
R
K
F
K
K
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
36.55
31%
-92
- C3 -
3BXL
-
B:
[3-17]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
A
A
M
-
M
I
M
D
Y
Y
K
Q
S
K
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
35.48
29%
-87
- C3 -
2HFR
-
A:
[10-26]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
-
N
-----
T
V
A
A
---
G
I
N
L
Y
K
A
I
R
R
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
34.00
31%
15
- C3 -
1P5K
1
RL1_HELPY
A:
[1-19]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
K
-
V
F
K
R
L
E
K
S
F
S
K
I
Q
N
D
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
28.55
21%
81
- C3 -
2GWW
-
B:
[9-21]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
N
I
Y
K
A
A
K
D
V
T
T
S
L
-
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
25.88
17%
-81
- C3 -
1Q90
2
M:
[15-32]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
M
T
L
V
G
L
A
-
I
G
F
V
L
L
R
V
-
E
-
S
L
V
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
25.70
27%
-79
- C3 -
2LS4
-
A:
[7-21]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
A
V
A
A
G
A
G
-
T
G
Y
F
L
F
S
W
-
K
-
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
24.33
9%
-56
- C3 -
3WDO
-
?
A:
[145-176]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
F
A
I
A
M
V
-
L
G
P
I
I
T
H
K
-
L
-
G
L
H
A
L
F
-
W
M
I
A
I
L
-
A
-----
T
T
G
I
A
-
L
T
I
W
V
V
P
N
S
S
T
H
V
L
N
R
-
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
14.23
20%
29
- C1 -
2KJF
-
CCLA_CARML
A:
[26-41]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
I
I
S
I
L
G
G
V
T
V
-
G
-----
L
S
G
V
F
-
T
A
V
K
A
A
I
A
K
Q
G
I
K
K
A
I
-
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------